mRNA_M-pyrifera_M_contig114526.3032.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114526.3032.1
Unique NamemRNA_M-pyrifera_M_contig114526.3032.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: A0A3D4UIY2_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UIY2_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 7.660e-15
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTWDGFRQTP 186
            W AQI LP     E   L +G+ER+DADG H+AWPRRMIPGQ EPARL I    +D  R  P
Sbjct:  540 WVAQITLPDSVFDEHADLVLGIERTDADGVHTAWPRRMIPGQSEPARLIITPDEFDNLRLDP 601
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: A0A5M4D491_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D491_9CYAN)

HSP 1 Score: 66.6 bits (161), Expect = 2.570e-11
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTWDGF 174
            W  +  +P  +I  D +L + + R D+ G  ++WPRRM+PGQ+EP R+ +   TWDGF
Sbjct:  568 WVVRFPIPDGAIESDGVLRLAITRQDSCGQRTSWPRRMLPGQVEPGRVAVQTQTWDGF 625
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: A0A3M2BG57_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BG57_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 8.950e-11
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTWDGFR 177
            W A++ +P   I    LL IGV R D  G  S+WPRR++PGQIEP R+ +   TW G+ 
Sbjct:  557 WVARLPIPADLIEPGGLLRIGVLREDGCGMRSSWPRRLLPGQIEPGRVAVQTRTWRGYE 615
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: UPI00199A80ED (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI00199A80ED)

HSP 1 Score: 62.8 bits (151), Expect = 5.840e-10
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTW 165
            W+A + +P  +I     L +G++R D  G HSAWPR M+P QI P R+ +D+STW
Sbjct:  557 WSAWVSIPASAIEAGPSLRLGIDRVDGLGRHSAWPRPMLPWQIGPGRVIVDLSTW 611
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: A0A6M8W0S3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8W0S3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.760e-8
Identity = 21/61 (34.43%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTWDGFRQT 183
            W+  + +P  +I    ++ +G+ R D  G  +AWPRR++P   EPAR  ID+  W G  ++
Sbjct:   87 WSLSVPVPAAAIEPGQIVRLGLTRVDPRGVRTAWPRRLMPWDTEPARAAIDLKAWSGLSES 147
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: A0A6I7PPT7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6I7PPT7_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.730e-6
Identity = 21/60 (35.00%), Postives = 33/60 (55.00%), Query Frame = 1 
Query:    1 WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTWDGFRQ 180
            W A +E+P +   +  +L +G+ER DA G  + WPR   P Q  P+R  I++  W G  +
Sbjct:  559 WIAVVEIPERFTRDRDVLLLGLERIDARGVRTTWPRAAFPWQTAPSRAAINLRAWRGLER 618
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BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Match: A0A7C3PF28_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3PF28_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.100e-6
Identity = 18/40 (45.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   49 LLAIGVERSDADGYHSAWPRRMIPGQIEPARLFIDVSTWD 168
            +L + ++R D  G  ++WPR M+PGQ+EP R+ I++ TWD
Sbjct:  572 VLHLSLQRIDEAGERASWPRAMLPGQVEPGRIGINIGTWD 611
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114526.3032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3D4UIY2_9BACT7.660e-1556.45Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A5M4D491_9CYAN2.570e-1141.38Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A3M2BG57_9BACT8.950e-1145.76Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI00199A80ED5.840e-1045.45Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A6M8W0S3_9BACT1.760e-834.43Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A6I7PPT7_9BACT3.730e-635.00Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7C3PF28_9BACT5.100e-645.00Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114526contigM-pyrifera_M_contig114526:358..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.8195786-CDS-M-pyrifera_M_contig114526:357..5461622815661.8195786-CDS-M-pyrifera_M_contig114526:357..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114526 358..546 -
1692277510.1363587-CDS-M-pyrifera_M_contig114526:357..5461692277510.1363587-CDS-M-pyrifera_M_contig114526:357..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114526 358..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114526.3032.1prot_M-pyrifera_M_contig114526.3032.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114526 358..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114526.3032.1

>prot_M-pyrifera_M_contig114526.3032.1 ID=prot_M-pyrifera_M_contig114526.3032.1|Name=mRNA_M-pyrifera_M_contig114526.3032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
WTAQIELPPQSILEDMLLAIGVERSDADGYHSAWPRRMIPGQIEPARLFI
DVSTWDGFRQTP*
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mRNA from alignment at M-pyrifera_M_contig114526:358..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114526.3032.1 ID=mRNA_M-pyrifera_M_contig114526.3032.1|Name=mRNA_M-pyrifera_M_contig114526.3032.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig114526:358..546- (Macrocystis pyrifera P11B4 male)
TGGACGGCACAGATCGAGCTCCCGCCGCAGAGCATCCTAGAAGACATGCT
GCTCGCGATCGGAGTCGAGCGGAGCGACGCCGACGGCTATCACTCCGCAT
GGCCACGCCGCATGATCCCGGGACAGATCGAGCCTGCGAGATTGTTCATC
GATGTCTCGACATGGGACGGCTTCCGCCAGACACCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114526:358..546-

>mRNA_M-pyrifera_M_contig114526.3032.1 ID=mRNA_M-pyrifera_M_contig114526.3032.1|Name=mRNA_M-pyrifera_M_contig114526.3032.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig114526:358..546- (Macrocystis pyrifera P11B4 male)
TGGACGGCACAGATCGAGCTCCCGCCGCAGAGCATCCTAGAAGACATGCT
GCTCGCGATCGGAGTCGAGCGGAGCGACGCCGACGGCTATCACTCCGCAT
GGCCACGCCGCATGATCCCGGGACAGATCGAGCCTGCGAGATTGTTCATC
GATGTCTCGACATGGGACGGCTTCCGCCAGACACCGTGATGGACGGCACA
GATCGAGCTCCCGCCGCAGAGCATCCTAGAAGACATGCTGCTCGCGATCG
GAGTCGAGCGGAGCGACGCCGACGGCTATCACTCCGCATGGCCACGCCGC
ATGATCCCGGGACAGATCGAGCCTGCGAGATTGTTCATCGATGTCTCGAC
ATGGGACGGCTTCCGCCAGACACCGTGA
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