mRNA_M-pyrifera_M_contig114477.3015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114477.3015.1
Unique NamemRNA_M-pyrifera_M_contig114477.3015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A518A646_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A518A646_9PLAN)

HSP 1 Score: 235 bits (599), Expect = 2.670e-76
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTCCASDCCNDRTDSFSE 360
            QINVAVT+RINEQLGF+LTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAA GMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTCCAS+CCNDRTDS+ +
Sbjct:  139 QINVAVTKRINEQLGFELTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAEGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTCCASECCNDRTDSYCD 258          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A518IC75_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IC75_9PLAN)

HSP 1 Score: 228 bits (580), Expect = 1.870e-73
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTCCASDCCNDRTDSFSE 360
            QINVAVTRRINEQLGF +TDAFCGLKAYR E L+KFNVTDLGYAMPLQLWVQAAAH MKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGL CCA++CC+DRTDSF E
Sbjct:  136 QINVAVTRRINEQLGFQITDAFCGLKAYRTECLSKFNVTDLGYAMPLQLWVQAAAHEMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLACCATECCDDRTDSFCE 255          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A517V8A6_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V8A6_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 1.830e-69
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTCCASDCCNDRTDSFSE 360
            QINVAVT RIN QLGF++TDAFCGLKAYRVEAL+ F VTDLGYAMPLQLWVQAAAH MKIVEF VPLVYLEEERSFGGSLDDAI+RKAYYDEVLDREMQAAG+TCCAS  CNDRTDS+SE
Sbjct:  139 QINVAVTNRINAQLGFNITDAFCGLKAYRVEALSLFKVTDLGYAMPLQLWVQAAAHAMKIVEFAVPLVYLEEERSFGGSLDDAIRRKAYYDEVLDREMQAAGMTCCASGNCNDRTDSYSE 258          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A517X1M4_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1M4_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 4.240e-68
Identity = 97/120 (80.83%), Postives = 114/120 (95.00%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTCCASDCCNDRTDSFSE 360
            QINVAVT+RIN+QLGF ++DAFCGLKAYR+E+L+KF +TD+GYAMPLQLWVQAAAHGMK++EFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDRE+QA+GLTCC ++ CND  DS++E
Sbjct:  139 QINVAVTQRINDQLGFQISDAFCGLKAYRIESLSKFKITDMGYAMPLQLWVQAAAHGMKLLEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREIQASGLTCCTTESCNDHADSYNE 258          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A3L7SHF3_9BACT (Glycosyltransferase family 2 protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SHF3_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.390e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLT 312
            +IN+ +T  +N Q   +LTDAFCG KAYRV++LA+  +T++GYAMPLQLWVQAAA  MK+VEFPVPLVYLEEERSFGGSLD A KR AYY EVLDREM +  LT
Sbjct:  134 KINLQITSWLNHQFSLNLTDAFCGFKAYRVDSLARLRITEIGYAMPLQLWVQAAAQKMKVVEFPVPLVYLEEERSFGGSLDIAAKRLAYYQEVLDREMASLQLT 237          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: UPI00029AE057 (glycosyltransferase family 2 protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029AE057)

HSP 1 Score: 151 bits (381), Expect = 2.940e-43
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGL 309
            +IN+ +T  +N Q   +LTDAFCG KAYRV+ LA+  +T+LGYAMPLQLWVQAAA  MKIVEFPVPL+YLEEERSFGGSLD A KR AYY EVLDREM +  L
Sbjct:  136 RINLQITEWLNHQFSLNLTDAFCGFKAYRVDCLARLRITELGYAMPLQLWVQAAAQKMKIVEFPVPLIYLEEERSFGGSLDIAAKRLAYYQEVLDREMSSLQL 238          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A517SLY7_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A517SLY7_9PLAN)

HSP 1 Score: 149 bits (377), Expect = 8.090e-43
Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTC 315
            ++NV +T +IN   G  LTD FCG KAYR EALAKF++T+LGYAMPLQLW+QA +HGM IVEFPVPL+YL+E RSFGGSLDD+  R AYY EVL REM    + C
Sbjct:  136 KVNVEITAQINRCFGLSLTDTFCGFKAYRTEALAKFDITELGYAMPLQLWIQAVSHGMTIVEFPVPLIYLDENRSFGGSLDDSGTRLAYYREVLKREMAQQQIGC 240          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A518GNL4_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=5 Tax=Planctopirus TaxID=1649480 RepID=A0A518GNL4_9PLAN)

HSP 1 Score: 149 bits (376), Expect = 1.710e-42
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGL 309
            +IN+ +T  +NE L ++LTD FCG KAYRV +L KF +TDLGYAMPLQLWVQAAA GMKIVEFPVPLVYLEEERSFGGSLDD+++RKA+Y+ V+ + +   GL
Sbjct:  143 RINMEITAYLNEILRWNLTDTFCGFKAYRVPSLKKFQITDLGYAMPLQLWVQAAAAGMKIVEFPVPLVYLEEERSFGGSLDDSVRRKAHYEAVIRQALIETGL 245          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A5C5WXX8_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5WXX8_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 2.290e-42
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQAAGLTC 315
            QINV++T ++N     +LTD+FCG K+YRVEAL  F +T+ GYAMPLQ W+QA  H +K+ EFPVPLVYLEEERSFGGSLDD+ +R AYY  VL REM+A G+ C
Sbjct:  136 QINVSITEQLNNCFDLNLTDSFCGFKSYRVEALKNFEITEFGYAMPLQFWIQAVGHNLKVREFPVPLVYLEEERSFGGSLDDSRQRMAYYQSVLKREMEAQGVPC 240          
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Match: A0A7V4P8M4_9PLAN (Glycosyltransferase family 2 protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V4P8M4_9PLAN)

HSP 1 Score: 147 bits (370), Expect = 2.530e-42
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    1 QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLWVQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQA 300
            QIN  VTR +NE+LG  LTDAFCG KAYRV ALAK  +T+ GYAMPL+LWVQAAA G++IVE PVPL+YLEEERSFGGSLDD  KR  YY +VLDR +++
Sbjct:   77 QINELVTRELNERLGLSLTDAFCGFKAYRVSALAKLAITEPGYAMPLELWVQAAALGLRIVEIPVPLIYLEEERSFGGSLDDGGKRLEYYHQVLDRAIES 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114477.3015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A646_9PLAN2.670e-7694.17Undecaprenyl-phosphate mannosyltransferase n=8 Tax... [more]
A0A518IC75_9PLAN1.870e-7390.83Undecaprenyl-phosphate mannosyltransferase n=2 Tax... [more]
A0A517V8A6_9PLAN1.830e-6988.33Undecaprenyl-phosphate mannosyltransferase n=9 Tax... [more]
A0A517X1M4_9PLAN4.240e-6880.83Undecaprenyl-phosphate mannosyltransferase n=2 Tax... [more]
A0A3L7SHF3_9BACT1.390e-4369.23Glycosyltransferase family 2 protein n=1 Tax=Planc... [more]
UPI00029AE0572.940e-4369.90glycosyltransferase family 2 protein n=1 Tax=Schle... [more]
A0A517SLY7_9PLAN8.090e-4365.71Undecaprenyl-phosphate mannosyltransferase n=2 Tax... [more]
A0A518GNL4_9PLAN1.710e-4267.96Undecaprenyl-phosphate mannosyltransferase n=5 Tax... [more]
A0A5C5WXX8_9PLAN2.290e-4262.86Undecaprenyl-phosphate mannosyltransferase n=1 Tax... [more]
A0A7V4P8M4_9PLAN2.530e-4270.00Glycosyltransferase family 2 protein n=1 Tax=Planc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114477contigM-pyrifera_M_contig114477:208..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score229.2
Seed ortholog evalue1e-57
Seed eggNOG ortholog344747.PM8797T_30776
KEGG rclassRC00005
KEGG koko:K00721
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Involved in cell wall
EggNOG OGs2IZ02@203682,COG1215@1,COG1215@2
EC2.4.1.83
COG Functional cat.M
CAZyGT2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.991241-CDS-M-pyrifera_M_contig114477:207..5701622815660.991241-CDS-M-pyrifera_M_contig114477:207..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114477 208..570 -
1692277509.7796733-CDS-M-pyrifera_M_contig114477:207..5701692277509.7796733-CDS-M-pyrifera_M_contig114477:207..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114477 208..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114477.3015.1prot_M-pyrifera_M_contig114477.3015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114477 208..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114477.3015.1

>prot_M-pyrifera_M_contig114477.3015.1 ID=prot_M-pyrifera_M_contig114477.3015.1|Name=mRNA_M-pyrifera_M_contig114477.3015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
QINVAVTRRINEQLGFDLTDAFCGLKAYRVEALAKFNVTDLGYAMPLQLW
VQAAAHGMKIVEFPVPLVYLEEERSFGGSLDDAIKRKAYYDEVLDREMQA
AGLTCCASDCCNDRTDSFSE*
back to top

mRNA from alignment at M-pyrifera_M_contig114477:208..570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114477.3015.1 ID=mRNA_M-pyrifera_M_contig114477.3015.1|Name=mRNA_M-pyrifera_M_contig114477.3015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig114477:208..570- (Macrocystis pyrifera P11B4 male)
CAGATTAACGTCGCCGTCACGCGTCGGATCAACGAACAGCTGGGCTTTGA TCTGACGGATGCCTTCTGTGGTCTGAAGGCGTACCGGGTCGAAGCACTGG CAAAGTTCAACGTGACCGATCTCGGCTACGCGATGCCGCTGCAACTCTGG GTTCAGGCCGCTGCCCACGGAATGAAGATTGTTGAATTCCCCGTTCCGCT GGTCTACCTCGAAGAAGAACGCAGCTTCGGTGGTTCGCTCGATGATGCGA TCAAACGCAAAGCATATTACGATGAAGTGCTCGACCGGGAAATGCAGGCA GCCGGGCTGACCTGCTGTGCCTCTGATTGTTGTAACGATCGTACCGATTC TTTCAGCGAGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114477:208..570-

>mRNA_M-pyrifera_M_contig114477.3015.1 ID=mRNA_M-pyrifera_M_contig114477.3015.1|Name=mRNA_M-pyrifera_M_contig114477.3015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig114477:208..570- (Macrocystis pyrifera P11B4 male)
CAGATTAACGTCGCCGTCACGCGTCGGATCAACGAACAGCTGGGCTTTGA
TCTGACGGATGCCTTCTGTGGTCTGAAGGCGTACCGGGTCGAAGCACTGG
CAAAGTTCAACGTGACCGATCTCGGCTACGCGATGCCGCTGCAACTCTGG
GTTCAGGCCGCTGCCCACGGAATGAAGATTGTTGAATTCCCCGTTCCGCT
GGTCTACCTCGAAGAAGAACGCAGCTTCGGTGGTTCGCTCGATGATGCGA
TCAAACGCAAAGCATATTACGATGAAGTGCTCGACCGGGAAATGCAGGCA
GCCGGGCTGACCTGCTGTGCCTCTGATTGTTGTAACGATCGTACCGATTC
TTTCAGCGAGTAACAGATTAACGTCGCCGTCACGCGTCGGATCAACGAAC
AGCTGGGCTTTGATCTGACGGATGCCTTCTGTGGTCTGAAGGCGTACCGG
GTCGAAGCACTGGCAAAGTTCAACGTGACCGATCTCGGCTACGCGATGCC
GCTGCAACTCTGGGTTCAGGCCGCTGCCCACGGAATGAAGATTGTTGAAT
TCCCCGTTCCGCTGGTCTACCTCGAAGAAGAACGCAGCTTCGGTGGTTCG
CTCGATGATGCGATCAAACGCAAAGCATATTACGATGAAGTGCTCGACCG
GGAAATGCAGGCAGCCGGGCTGACCTGCTGTGCCTCTGATTGTTGTAACG
ATCGTACCGATTCTTTCAGCGAGTAA
back to top