mRNA_M-pyrifera_M_contig114467.3014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114467.3014.1
Unique NamemRNA_M-pyrifera_M_contig114467.3014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114467.3014.1 vs. uniprot
Match: A0A078ASX8_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ASX8_STYLE)

HSP 1 Score: 68.2 bits (165), Expect = 3.170e-11
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:    1 FEPHCNSHSNNFIVVPPAGQPQKGALNRFLAPCDFDMAYLREHFISPYTSAP------DNDLFDSWKDTEAVELARSLGGES--ANSGVAVSAEESQSE 273
            F+PHCN+H NNF+V+           +  LAP DFDM Y  + FIS     P      D +LFDSW  +E  EL ++LGGE   AN    +  EE+Q+E
Sbjct:  293 FQPHCNAHPNNFLVLDLLAD-YNNEYHNLLAPVDFDMTYEFKQFISNVQDDPAQYGKQDRELFDSWSGSEKYELEKALGGEENMANFVYGIQEEENQAE 390
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BLAST of mRNA_M-pyrifera_M_contig114467.3014.1 vs. uniprot
Match: J9IHM3_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IHM3_9SPIT)

HSP 1 Score: 67.0 bits (162), Expect = 8.150e-11
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:    1 FEPHCNSHSNNFIVVPPAGQPQKGALNRFLAPCDFDMAYLREHFISPYTSAPDN------DLFDSWKDTEAVELARSLGGESANSGVAVSAE-ESQSEVGRRKPTDAL 303
            F+PHCN+H NNFIV+      +    +  L+P DFDMAY    FIS     P N      + FD+W   E  EL R+LGGE   +      E +SQ +   + P DAL
Sbjct:  318 FQPHCNAHPNNFIVL----DLENNENHNLLSPLDFDMAYEFSQFISNVQDDPKNFGTQSREQFDNWNGQEKYELERALGGEENMANFQYEEESQSQDQNAEQNPKDAL 421
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BLAST of mRNA_M-pyrifera_M_contig114467.3014.1 vs. uniprot
Match: A0A1R2ASX4_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ASX4_9CILI)

HSP 1 Score: 60.8 bits (146), Expect = 1.190e-8
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:    1 FEPHCNSHSNNFIVVPPAGQPQKGALNRFLAPCDFDMAYLREHFISPYTS----APDNDLFDSWKDTEAVELARSLGGE 225
            FEPHCN+H NNFI++ P            LAP DFDMA+ +  FISP         D DLF++W + E   L  +L G+
Sbjct:  327 FEPHCNAHCNNFIILGPQS-------TNILAPVDFDMAFSKTEFISPIEGEGFGTNDIDLFENWVNCERNCLEYTLAGQ 398
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114467.3014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A078ASX8_STYLE3.170e-1141.41Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
J9IHM3_9SPIT8.150e-1138.89Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A1R2ASX4_9CILI1.190e-841.77Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114467contigM-pyrifera_M_contig114467:248..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.9475095-CDS-M-pyrifera_M_contig114467:247..5501622815660.9475095-CDS-M-pyrifera_M_contig114467:247..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114467 248..550 -
1692277509.7678776-CDS-M-pyrifera_M_contig114467:247..5501692277509.7678776-CDS-M-pyrifera_M_contig114467:247..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114467 248..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114467.3014.1prot_M-pyrifera_M_contig114467.3014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114467 248..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114467.3014.1

>prot_M-pyrifera_M_contig114467.3014.1 ID=prot_M-pyrifera_M_contig114467.3014.1|Name=mRNA_M-pyrifera_M_contig114467.3014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
FEPHCNSHSNNFIVVPPAGQPQKGALNRFLAPCDFDMAYLREHFISPYTS
APDNDLFDSWKDTEAVELARSLGGESANSGVAVSAEESQSEVGRRKPTDA
L
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mRNA from alignment at M-pyrifera_M_contig114467:248..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114467.3014.1 ID=mRNA_M-pyrifera_M_contig114467.3014.1|Name=mRNA_M-pyrifera_M_contig114467.3014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig114467:248..550- (Macrocystis pyrifera P11B4 male)
TTTGAACCTCACTGCAATAGCCACTCCAACAACTTCATTGTCGTCCCGCC
CGCGGGACAGCCCCAGAAAGGAGCCCTGAACCGATTCCTGGCCCCGTGTG
ACTTCGACATGGCATACCTGAGGGAGCATTTCATTTCTCCGTACACTTCA
GCTCCTGACAATGACTTGTTTGACTCTTGGAAGGACACGGAAGCTGTCGA
GCTCGCCCGCTCCCTAGGAGGCGAGTCAGCCAACTCGGGGGTCGCCGTTT
CAGCAGAGGAATCGCAGTCTGAGGTAGGCCGCCGAAAACCGACAGACGCA
CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114467:248..550-

>mRNA_M-pyrifera_M_contig114467.3014.1 ID=mRNA_M-pyrifera_M_contig114467.3014.1|Name=mRNA_M-pyrifera_M_contig114467.3014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig114467:248..550- (Macrocystis pyrifera P11B4 male)
TTTGAACCTCACTGCAATAGCCACTCCAACAACTTCATTGTCGTCCCGCC
CGCGGGACAGCCCCAGAAAGGAGCCCTGAACCGATTCCTGGCCCCGTGTG
ACTTCGACATGGCATACCTGAGGGAGCATTTCATTTCTCCGTACACTTCA
GCTCCTGACAATGACTTGTTTGACTCTTGGAAGGACACGGAAGCTGTCGA
GCTCGCCCGCTCCCTAGGAGGCGAGTCAGCCAACTCGGGGGTCGCCGTTT
CAGCAGAGGAATCGCAGTCTGAGGTAGGCCGCCGAAAACCGACAGACGCA
CTGTTTGAACCTCACTGCAATAGCCACTCCAACAACTTCATTGTCGTCCC
GCCCGCGGGACAGCCCCAGAAAGGAGCCCTGAACCGATTCCTGGCCCCGT
GTGACTTCGACATGGCATACCTGAGGGAGCATTTCATTTCTCCGTACACT
TCAGCTCCTGACAATGACTTGTTTGACTCTTGGAAGGACACGGAAGCTGT
CGAGCTCGCCCGCTCCCTAGGAGGCGAGTCAGCCAACTCGGGGGTCGCCG
TTTCAGCAGAGGAATCGCAGTCTGAGGTAGGCCGCCGAAAACCGACAGAC
GCACTG
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