mRNA_M-pyrifera_M_contig114440.3011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114440.3011.1
Unique NamemRNA_M-pyrifera_M_contig114440.3011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114440.3011.1 vs. uniprot
Match: A0A7S3DGB4_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DGB4_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 2.660e-9
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   70 LDELENLTNWYTMFGTGYQELLHEVVRRRKVQERQQKVLDAMVAELESMRAEELASREMFFNSFGQYLPATLCPAAAEPPVTWTLSADFVASKL 351
            + E E L++W+  + T + +L  E+ RR   +E+QQK++D    E+ ++  EE+A R+ F  SFG+YLP +LCP   E  V   +S   V S L
Sbjct:  333 MQETEKLSSWFKNYITAHDQLPSEIRRRLDFEEKQQKLVDRFRREMGALVTEEMARRDDFAESFGRYLPESLCPGLDEDVVMVEVSPSHVKSSL 426
[Close]
BLAST of mRNA_M-pyrifera_M_contig114440.3011.1 vs. uniprot
Match: A0A074ZF03_AURSE (Autophagy-related protein 17 n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074ZF03_AURSE)

HSP 1 Score: 62.4 bits (150), Expect = 1.250e-8
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   73 DELENLTNWYTMFGTGYQELLHEVVRRRKVQERQQKVLDAMVAELESMRAEELASREMFFNSFGQYLPATLCPAAAEPPVTWTLSA 330
            DEL +LT++Y  F   Y  LL EV RR+ V+ R +++ D    E+ES+  E++A RE F  S G++LP  + P   + P  W + A
Sbjct:  362 DELGSLTDFYESFIASYASLLDEVNRRQAVENRMRRIADKARREIESLYKEDVAMREDFVRSTGEFLPRDIWPGLVDAPKRWEIRA 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig114440.3011.1 vs. uniprot
Match: A0A6A6TWT8_9PEZI (Autophagy-related protein 17 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6TWT8_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 1.730e-8
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:   70 LDELENLTNWYTMFGTGYQELLHEVVRRRKVQERQQKVLDAMVAELESMRAEELASREMFFNSFGQYLPATLCPAAAEPPVTWTLSADFV-ASKLPTL 360
            +DE+E L ++Y  FG+GY  L+ EV RRR+V+   +K+    + E+  +   ++  RE F     +YLPA + P    PP  + +S D   A+KLP L
Sbjct:  375 VDEIEGLHDFYIAFGSGYDNLILEVQRRRQVKREMEKIAKKAMTEISKLYKADMVKREDFGVEHAEYLPADIWPGWDNPPAQFEISVDGEEATKLPEL 472
[Close]
BLAST of mRNA_M-pyrifera_M_contig114440.3011.1 vs. uniprot
Match: A0A5N6KXZ9_9ROSI (ATG17_like domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KXZ9_9ROSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.850e-5
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:   70 LDELENLTNWYTMFGTGYQELLHEVVRRRKVQERQQKVLDAMVAELESMRAEELASREMFFNSFGQYLPATLCPAAAEPP 309
            ++EL  L  +YT F   Y  LL EVVRR+ V+ + Q+V    +  +  +  ++   RE F    G +LPA + P  A PP
Sbjct:  368 MEELHGLRQFYTGFLRAYDGLLVEVVRRKVVRSKMQRVAQDAMRRIRELHEDDAEEREAFKEEHGDFLPADIWPGLALPP 447
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114440.3011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3DGB4_9EUKA2.660e-937.23Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A074ZF03_AURSE1.250e-838.37Autophagy-related protein 17 n=1 Tax=Aureobasidium... [more]
A0A6A6TWT8_9PEZI1.730e-835.71Autophagy-related protein 17 n=1 Tax=Microthyrium ... [more]
A0A5N6KXZ9_9ROSI3.850e-535.00ATG17_like domain-containing protein n=1 Tax=Carpi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114440contigM-pyrifera_M_contig114440:104..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue9.7e-15
Seed eggNOG ortholog588596.U9T467
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Autophagy protein Apg17
EggNOG OGs2CS05@1,2S48C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.8141708-CDS-M-pyrifera_M_contig114440:103..5261622815660.8141708-CDS-M-pyrifera_M_contig114440:103..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114440 104..526 +
1692277509.7226346-CDS-M-pyrifera_M_contig114440:103..5261692277509.7226346-CDS-M-pyrifera_M_contig114440:103..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114440 104..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114440.3011.1prot_M-pyrifera_M_contig114440.3011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114440 104..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114440.3011.1

>prot_M-pyrifera_M_contig114440.3011.1 ID=prot_M-pyrifera_M_contig114440.3011.1|Name=mRNA_M-pyrifera_M_contig114440.3011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VILIAVADNGQSLRDREHDTSFYLDELENLTNWYTMFGTGYQELLHEVVR
RRKVQERQQKVLDAMVAELESMRAEELASREMFFNSFGQYLPATLCPAAA
EPPVTWTLSADFVASKLPTLTSTASRTAYEGMSRALDGHP*
back to top

mRNA from alignment at M-pyrifera_M_contig114440:104..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114440.3011.1 ID=mRNA_M-pyrifera_M_contig114440.3011.1|Name=mRNA_M-pyrifera_M_contig114440.3011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig114440:104..526+ (Macrocystis pyrifera P11B4 male)
GTGATTCTTATCGCAGTTGCTGACAATGGCCAGTCGCTGCGAGACCGTGA
GCACGACACCTCTTTTTACTTGGACGAACTTGAGAACCTCACCAATTGGT
ACACAATGTTTGGTACAGGCTACCAAGAGCTCCTTCACGAGGTCGTGCGT
AGACGTAAGGTCCAGGAGAGACAGCAGAAGGTTCTCGACGCCATGGTTGC
AGAGCTGGAGTCGATGCGAGCCGAGGAGCTCGCTTCCCGAGAGATGTTTT
TCAATTCCTTTGGGCAGTACCTGCCTGCCACACTCTGCCCAGCTGCGGCA
GAGCCTCCGGTAACGTGGACACTCTCCGCTGACTTTGTTGCATCGAAGTT
GCCCACGCTCACATCCACGGCCTCAAGAACAGCATACGAAGGCATGTCCA
GGGCACTGGATGGCCATCCTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114440:104..526+

>mRNA_M-pyrifera_M_contig114440.3011.1 ID=mRNA_M-pyrifera_M_contig114440.3011.1|Name=mRNA_M-pyrifera_M_contig114440.3011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig114440:104..526+ (Macrocystis pyrifera P11B4 male)
GTGATTCTTATCGCAGTTGCTGACAATGGCCAGTCGCTGCGAGACCGTGA
GCACGACACCTCTTTTTACTTGGACGAACTTGAGAACCTCACCAATTGGT
ACACAATGTTTGGTACAGGCTACCAAGAGCTCCTTCACGAGGTCGTGCGT
AGACGTAAGGTCCAGGAGAGACAGCAGAAGGTTCTCGACGCCATGGTTGC
AGAGCTGGAGTCGATGCGAGCCGAGGAGCTCGCTTCCCGAGAGATGTTTT
TCAATTCCTTTGGGCAGTACCTGCCTGCCACACTCTGCCCAGCTGCGGCA
GAGCCTCCGGTAACGTGGACACTCTCCGCTGACTTTGTTGCATCGAAGTT
GCCCACGCTCACATCCACGGCCTCAAGAACAGCATACGAAGGCATGTCCA
GGGCACTGGATGGCCATCCTTGAGTGATTCTTATCGCAGTTGCTGACAAT
GGCCAGTCGCTGCGAGACCGTGAGCACGACACCTCTTTTTACTTGGACGA
ACTTGAGAACCTCACCAATTGGTACACAATGTTTGGTACAGGCTACCAAG
AGCTCCTTCACGAGGTCGTGCGTAGACGTAAGGTCCAGGAGAGACAGCAG
AAGGTTCTCGACGCCATGGTTGCAGAGCTGGAGTCGATGCGAGCCGAGGA
GCTCGCTTCCCGAGAGATGTTTTTCAATTCCTTTGGGCAGTACCTGCCTG
CCACACTCTGCCCAGCTGCGGCAGAGCCTCCGGTAACGTGGACACTCTCC
GCTGACTTTGTTGCATCGAAGTTGCCCACGCTCACATCCACGGCCTCAAG
AACAGCATACGAAGGCATGTCCAGGGCACTGGATGGCCATCCTTGA
back to top