mRNA_M-pyrifera_M_contig114429.3007.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114429.3007.1
Unique NamemRNA_M-pyrifera_M_contig114429.3007.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114429.3007.1 vs. uniprot
Match: L8HDI1_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDI1_ACACA)

HSP 1 Score: 65.1 bits (157), Expect = 2.030e-9
Identity = 41/139 (29.50%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   25 VRAVSDQLSEAVSQFTLYVVKRKEIRAALPENLTKNVDAVCNQCFTMVQLAQGIAGS-YAEFPSIEAEIRSEAAGLEXXXXXXXXXVDSMKGVEHSQEVADSWQMLATACGAIAKSVIRLLEILYDAEVKRIYLQAEKS 438
            V+ +++ LS+AV+Q  + VV  +E  A +P  L     AVC    T+V +A+ +A   Y++FP I  +I   A G+E         V ++      Q     W  L   C  IA   I LL+I+Y A++ R++  ++++
Sbjct:   10 VQQITETLSDAVAQLVVLVVALQEQNAEMPPTLPTAAQAVCGASGTLVSVARALAEEEYSDFPDICGQILGAADGVEQAASAMIIAVQAVATAYDRQA---GWSQLVECCKIIAGKTIILLQIVYGADLYRLFACSDQT 145
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BLAST of mRNA_M-pyrifera_M_contig114429.3007.1 vs. uniprot
Match: UPI000644A438 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A438)

HSP 1 Score: 60.5 bits (145), Expect = 8.150e-8
Identity = 37/148 (25.00%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:    1 GFAIDKATVRAVSDQLSEAVSQFTLYVVKRKEIRAALPENLTKNVDAVCNQCFTMVQLAQGIAGS-YAEFPSIEAEIRSEAAGLEXXXXXXXXXVDSMKGVEHSQEVADSWQMLATACGAIAKSVIRLLEILYDAEVKRIYLQAEKSK 441
            GF  D++  + + +QLSE +SQ    VV  +E  A LP +    +  V N    +  ++  +A   Y+++P I+ EI + ++ +          +DS+           +W+ L+  C +I    I++L ++Y AE+KR+ + ++++K
Sbjct:    6 GFQSDQSFAQHLLEQLSENISQLIHLVVFLQEQNAELPVD---QISDVANAAAAIADISISLANDEYSDYPDIKNEILAASSKM---AITKKHALDSINSFSRQTNRKKAWENLSDNCRSIGNETIKILHVVYGAELKRLIIHSDRAK 147
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BLAST of mRNA_M-pyrifera_M_contig114429.3007.1 vs. uniprot
Match: A0A151ZAH8_9MYCE (Filament-interacting protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAH8_9MYCE)

HSP 1 Score: 59.3 bits (142), Expect = 2.060e-7
Identity = 35/139 (25.18%), Postives = 74/139 (53.24%), Query Frame = 1 
Query:   13 DKATVRAVSDQLSEAVSQFTLYVVKRKEIRAALPENLTKNVDAVCNQCFTMVQLAQGIAGSYAEFPSIEAEIRSEAAGLEXXXXXXXXXVDSMKGVEHSQEVADSWQMLATACGAIAKSVIRLLEILYDAEVKRIYLQA 429
            D++  + V +QLS+ +S+  L V++ KE  A +P N    +  V N   T+  +++ +A  Y++F  I  +I   +  L+         + ++K   ++ +   +W  L  +C  +++  + LLE++YDA++KR+ + A
Sbjct:    4 DQSFAQNVFEQLSDNISRLILLVIELKERDAVVPVN---EIGLVANSVSTISNVSKLLASEYSDFHQIRDKINDASNKLQNIHDRI---ITNLKDFSNTSDRKLAWSNLINSCRELSEESMNLLEVVYDADLKRLEMIA 136
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BLAST of mRNA_M-pyrifera_M_contig114429.3007.1 vs. uniprot
Match: A0A6B2KW99_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KW99_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 5.060e-7
Identity = 37/140 (26.43%), Postives = 65/140 (46.43%), Query Frame = 1 
Query:   25 VRAVSDQLSEAVSQFTLYVVKRKEIRAALPENLTKNVDAVCNQCFTMVQLAQGIAGS-YAEFPSIEAEIRSEAAGLEXXXXXXXXXVDSMKGVEHSQEVADSWQMLATACGAIAKSVIRLLEILYDAEVKRIYLQAEKSK 441
            V+ V + LSE VS+  L VV   E    +P  +      V     ++ Q+A+ +A + Y  +P I  EI      ++         ++ ++    +  +   W  L  AC  ++   IRLL+I+Y A++KR+ + AE  K
Sbjct:    8 VKRVIEDLSEGVSELVLTVVVLSEQNVPIPPGVVDTAKGVNETALSLSQIARQLARTNYKPYPEISNEIEGACTAVDEAVAGMRSSLERLQ----TGNLKSGWNGLLDACRVMSGKTIRLLQIVYGADLKRLLIVAENLK 143
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BLAST of mRNA_M-pyrifera_M_contig114429.3007.1 vs. uniprot
Match: UPI000644BEA3 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BEA3)

HSP 1 Score: 55.5 bits (132), Expect = 4.470e-6
Identity = 33/145 (22.76%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:   10 IDKATVRAVSDQLSEAVSQFTLYVVKRKEIRAALPENLTKNVDAVCNQCFTMVQLAQGIAGS-YAEFPSIEAEIRSEAAGLEXXXXXXXXXVDSMKGVEHSQEVADSWQMLATACGAIAKSVIRLLEILYDAEVKRIYLQAEKSK 441
            +D++  + + +++SE +S   L VV  +E  A LP +    +  V N   ++ +++  +A   Y ++P ++ EI   ++ +          +DS++   +      SW  ++  C +I    I++L ++Y AE+KR+   A+ +K
Sbjct:   11 VDQSFAQHLLEKISENISSLILMVVLLQEQNADLPID---EITLVANAAASVAEISTNLASEEYQDYPDLQKEILDASSNM---LSTKQQTLDSIRAFPNEPNRKRSWDNISEHCRSIGNETIKILHVVYGAEMKRLIKNADIAK 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114429.3007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
L8HDI1_ACACA2.030e-929.50Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
UPI000644A4388.150e-825.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151ZAH8_9MYCE2.060e-725.18Filament-interacting protein n=1 Tax=Tieghemosteli... [more]
A0A6B2KW99_9EUKA5.060e-726.43Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
UPI000644BEA34.470e-622.76hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114429contigM-pyrifera_M_contig114429:117..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.6539247-CDS-M-pyrifera_M_contig114429:116..5571622815660.6539247-CDS-M-pyrifera_M_contig114429:116..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114429 117..557 -
1692277509.6547918-CDS-M-pyrifera_M_contig114429:116..5571692277509.6547918-CDS-M-pyrifera_M_contig114429:116..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114429 117..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114429.3007.1prot_M-pyrifera_M_contig114429.3007.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114429 117..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114429.3007.1

>prot_M-pyrifera_M_contig114429.3007.1 ID=prot_M-pyrifera_M_contig114429.3007.1|Name=mRNA_M-pyrifera_M_contig114429.3007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
GFAIDKATVRAVSDQLSEAVSQFTLYVVKRKEIRAALPENLTKNVDAVCN
QCFTMVQLAQGIAGSYAEFPSIEAEIRSEAAGLESSAKNMETTVDSMKGV
EHSQEVADSWQMLATACGAIAKSVIRLLEILYDAEVKRIYLQAEKSK
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mRNA from alignment at M-pyrifera_M_contig114429:117..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114429.3007.1 ID=mRNA_M-pyrifera_M_contig114429.3007.1|Name=mRNA_M-pyrifera_M_contig114429.3007.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig114429:117..557- (Macrocystis pyrifera P11B4 male)
GGGTTCGCTATTGACAAAGCAACAGTGAGAGCGGTGTCGGATCAGCTCTC
AGAGGCAGTGTCTCAGTTCACACTCTATGTGGTGAAGCGGAAGGAGATCC
GCGCGGCGCTGCCGGAGAACCTCACGAAGAACGTGGATGCAGTGTGCAAC
CAATGCTTCACAATGGTGCAGCTGGCACAGGGCATAGCCGGGAGCTACGC
AGAGTTCCCCAGCATCGAAGCAGAGATTCGCTCGGAGGCCGCGGGCCTCG
AGTCCTCTGCGAAGAACATGGAGACCACTGTGGACAGCATGAAGGGCGTC
GAGCACAGCCAAGAGGTCGCAGACAGCTGGCAGATGCTCGCCACCGCATG
TGGAGCCATCGCAAAGAGCGTGATTCGTCTCCTCGAGATTCTCTATGACG
CGGAGGTGAAGAGGATCTATCTGCAGGCTGAGAAGTCCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114429:117..557-

>mRNA_M-pyrifera_M_contig114429.3007.1 ID=mRNA_M-pyrifera_M_contig114429.3007.1|Name=mRNA_M-pyrifera_M_contig114429.3007.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig114429:117..557- (Macrocystis pyrifera P11B4 male)
GGGTTCGCTATTGACAAAGCAACAGTGAGAGCGGTGTCGGATCAGCTCTC
AGAGGCAGTGTCTCAGTTCACACTCTATGTGGTGAAGCGGAAGGAGATCC
GCGCGGCGCTGCCGGAGAACCTCACGAAGAACGTGGATGCAGTGTGCAAC
CAATGCTTCACAATGGTGCAGCTGGCACAGGGCATAGCCGGGAGCTACGC
AGAGTTCCCCAGCATCGAAGCAGAGATTCGCTCGGAGGCCGCGGGCCTCG
AGTCCTCTGCGAAGAACATGGAGACCACTGTGGACAGCATGAAGGGCGTC
GAGCACAGCCAAGAGGTCGCAGACAGCTGGCAGATGCTCGCCACCGCATG
TGGAGCCATCGCAAAGAGCGTGATTCGTCTCCTCGAGATTCTCTATGACG
CGGAGGTGAAGAGGATCTATCTGCAGGCTGAGAAGTCCAAGGGGTTCGCT
ATTGACAAAGCAACAGTGAGAGCGGTGTCGGATCAGCTCTCAGAGGCAGT
GTCTCAGTTCACACTCTATGTGGTGAAGCGGAAGGAGATCCGCGCGGCGC
TGCCGGAGAACCTCACGAAGAACGTGGATGCAGTGTGCAACCAATGCTTC
ACAATGGTGCAGCTGGCACAGGGCATAGCCGGGAGCTACGCAGAGTTCCC
CAGCATCGAAGCAGAGATTCGCTCGGAGGCCGCGGGCCTCGAGTCCTCTG
CGAAGAACATGGAGACCACTGTGGACAGCATGAAGGGCGTCGAGCACAGC
CAAGAGGTCGCAGACAGCTGGCAGATGCTCGCCACCGCATGTGGAGCCAT
CGCAAAGAGCGTGATTCGTCTCCTCGAGATTCTCTATGACGCGGAGGTGA
AGAGGATCTATCTGCAGGCTGAGAAGTCCAAG
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