mRNA_M-pyrifera_M_contig1144.3004.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1144.3004.1
Unique NamemRNA_M-pyrifera_M_contig1144.3004.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1144.3004.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 2.580e-127
Identity = 258/472 (54.66%), Postives = 296/472 (62.71%), Query Frame = 1 
Query:    1 GVFFVLATKAISVPPVCAGCRLGWGRRVHTLGEDGSGGGXXXXSCGRDQEGDSYLE---GGKFYGNARKE-----RAPLGGGSSPHTSSADGEGXXXXXXXXXXXXPGGVN-----GTFPKKTTKLALPARHWMCTVCKKVNGFPEEWDGRAGKAVEVVIKRKKVDTQAMYGAFKTKLAVPTCVKCQAPFNYSWRNG------------RRDDGVLVRADGHGNTLGLSRSPPRPTTSASTCGTDDTTAGGSPEAPSRPRMLVKMAGSIRKFV--LHPREVSPSEATGQRGVVDDSTDPELWYGNEFRRQLKTYFNPELERPSLSLRGGRYSIGARVACFAGRDTWYPGAVTTSRENNTYDVRYDNGDIAQHVFPHMIRFEPTHSDSELLCCYYGLALVAAATWPLMGAWYFSTSTXXXXXXXXXXXVGAVIAVPALIVGAAGTVAVVLQFGAIYRENKSTGLRMMVKYAVV 1335
            GVFF LATKA+SVP  C G RL   RRVH L +D +   XXXX     ++ ++ LE   GGK  G   +E     RAPLGG S           XXXXXXXXXXXX    N     GT  +K T+L LP RHWMCTVCKKVN  P+EW+GRAGK V VVIKRK VDT+AMYG FKTK  VP C KC+ PFNYSWRNG            R  D  L R     +T   + S   P  SA+  G  D   GG   A    R+L K A  IR        R  + S+    RG  D   +PELWYG EFRRQL TYF PEL RP+    G RY +GARVACFAG+D WYPGAV  SREN+TYDVRYDNGDIAQHVF HMIRFEP H+DS L CCYYGLAL AAA WPL G+WYFS+++  XXXXXXXXX    +A+PAL+VG AGT+AV  QF  IY +N+STGL +  K+A V
Sbjct:   55 GVFFFLATKAVSVPAFCGGGRL-CERRVHALKDDATSTDXXXXXXXXXRDNEAALERGGGGKTIGGDAQEEGDLQRAPLGGSSGRRXXXXXXXXXXXXXXXXXXXXXXSANRLADGGT--RKRTELDLPPRHWMCTVCKKVNMLPDEWNGRAGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCRTPFNYSWRNGGGSDNLMQQRQQRLLDAALSRPTNAASTAVAAGSATDPALSAAVDGPMDAENGGVAAAAVHRRVLAKAARFIRALCSPCRRRRAASSKPFDGRGGSDAVEEPELWYGREFRRQLMTYFKPELSRPAAG--GERYPVGARVACFAGKDAWYPGAVAASRENDTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAAXXXXXXXXXX---VALPALVVGTAGTLAVAFQFWEIYADNRSTGLCVATKFAAV 518
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BLAST of mRNA_M-pyrifera_M_contig1144.3004.1 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 6.970e-105
Identity = 179/329 (54.41%), Postives = 207/329 (62.92%), Query Frame = 1 
Query:  391 FPEEWDGRAGKAVEVVIKRKKVDTQAMYGAFKTKLAVPTCVKCQAPFNYSWRNG------------RRDDGVLVRADGHGNTLGLSRSPPRPTTSASTCGTDDTTAGGSPEAPSRPRMLVKMAGSIRKFV--LHPREVSPSEATGQRGVVDDSTDPELWYGNEFRRQLKTYFNPELERPSLSLRGGRYSIGARVACFAGRDTWYPGAVTTSRENNTYDVRYDNGDIAQHVFPHMIRFEPTHSDSELLCCYYGLALVAAATWPLMGAWYFSTSTXXXXXXXXXXXVGAVIAVPALIVGAAGTVAVVLQFGAIYRENKSTGLRMMVKYAVV 1335
             P+EWDGR GK V VVIKRK VDT+AMYG FKTK  VP C KC  PFNYSWRNG            R  D  L R     +T   + S   P  SA+  G  +   GG   A    R+L K A  IR        R  + S+    RG  D   +PELWYG EFRRQL TYF PEL RP+ S  GGRY +GARVACFAG+D WYPGAV  SRENNTYDVRYDNGDIAQHVF HMIRFEP H+DS L CCYYGLAL AAA WPL G+WYFS+++             A++A+PAL+VG AGT+AV  Q   IY +N+STGL +  K+AV+
Sbjct:    2 LPDEWDGRTGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCHTPFNYSWRNGGGSDKLMQQRQQRLLDAALSRPTSAASTAVAAGSATDPALSAAADGLMNAENGGVAAAAVHRRVLAKAARFIRGIYSQCRRRRAASSKTFDGRGGADAVEEPELWYGREFRRQLMTYFKPELSRPAAS--GGRYPVGARVACFAGKDAWYPGAVAASRENNTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAATDAATSA---AALVALPALVVGTAGTLAVAFQIWEIYADNRSTGLCVATKFAVI 325
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1144.3004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNQ8_ECTSI2.580e-12754.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3X8_9PHAE6.970e-10554.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1144contigM-pyrifera_M_contig1144:6029..8147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004610.1
Exons3
Model size1335
Cds size1335
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1144.3004.1prot_M-pyrifera_M_contig1144.3004.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1144 6029..8147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.4515128-CDS-M-pyrifera_M_contig1144:6028..69821622815660.4515128-CDS-M-pyrifera_M_contig1144:6028..6982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1144 6029..6982 -
1692277509.5594053-CDS-M-pyrifera_M_contig1144:6028..69821692277509.5594053-CDS-M-pyrifera_M_contig1144:6028..6982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1144 6029..6982 -
1622815660.4665978-CDS-M-pyrifera_M_contig1144:7622..77641622815660.4665978-CDS-M-pyrifera_M_contig1144:7622..7764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1144 7623..7764 -
1692277509.5694504-CDS-M-pyrifera_M_contig1144:7622..77641692277509.5694504-CDS-M-pyrifera_M_contig1144:7622..7764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1144 7623..7764 -
1622815660.4792745-CDS-M-pyrifera_M_contig1144:7908..81471622815660.4792745-CDS-M-pyrifera_M_contig1144:7908..8147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1144 7909..8147 -
1692277509.5782566-CDS-M-pyrifera_M_contig1144:7908..81471692277509.5782566-CDS-M-pyrifera_M_contig1144:7908..8147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1144 7909..8147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1144.3004.1

>prot_M-pyrifera_M_contig1144.3004.1 ID=prot_M-pyrifera_M_contig1144.3004.1|Name=mRNA_M-pyrifera_M_contig1144.3004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=445bp
GVFFVLATKAISVPPVCAGCRLGWGRRVHTLGEDGSGGGSGGGSCGRDQE
GDSYLEGGKFYGNARKERAPLGGGSSPHTSSADGEGGGGGGGGGGGGGPG
GVNGTFPKKTTKLALPARHWMCTVCKKVNGFPEEWDGRAGKAVEVVIKRK
KVDTQAMYGAFKTKLAVPTCVKCQAPFNYSWRNGRRDDGVLVRADGHGNT
LGLSRSPPRPTTSASTCGTDDTTAGGSPEAPSRPRMLVKMAGSIRKFVLH
PREVSPSEATGQRGVVDDSTDPELWYGNEFRRQLKTYFNPELERPSLSLR
GGRYSIGARVACFAGRDTWYPGAVTTSRENNTYDVRYDNGDIAQHVFPHM
IRFEPTHSDSELLCCYYGLALVAAATWPLMGAWYFSTSTTSTTSTEEAEG
VGAVIAVPALIVGAAGTVAVVLQFGAIYRENKSTGLRMMVKYAVV
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mRNA from alignment at M-pyrifera_M_contig1144:6029..8147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1144.3004.1 ID=mRNA_M-pyrifera_M_contig1144.3004.1|Name=mRNA_M-pyrifera_M_contig1144.3004.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2119bp|location=Sequence derived from alignment at M-pyrifera_M_contig1144:6029..8147- (Macrocystis pyrifera P11B4 male)
GGCGTTTTTTTCGTTCTCGCGACAAAGGCGATTTCAGTCCCTCCCGTTTG
CGCCGGCTGTCGATTGGGGTGGGGACGCCGAGTGCACACCCTCGGCGAGG
ACGGTAGCGGAGGAGGCAGCGGCGGCGGTAGCTGCGGCAGAGACCAAGAG
GGAGACTCCTACCTCGAGGGGGGAAAGTTTTACGGAAATGCGCGCAAGGA
ACGGGCACCGCTCGGGGGTGGCAGTTCCCCTCACACATCGTCGGAGGAGG
GGGGGGGAGGGGGGGGGAATAGCAGTGCGTATCAACAAGAGACCCAGTCA
AGCCGGGATATGGGGGAACATAAGCTGGATGAGGAGGGGGGTGGTTCAGC
TTTCCGCCCAGGGGGGGTGGCAGAGCTTGGGAGGAGCGCTGACGGCGAGG
GTGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCCGGGGGGAGTC
AACGGGACATTCCCGAAAAAAACAACAAAACTTGCACTGCCGGCCAGACA
CTGGATGTGCACCGTGTGCAAGAAGGTTCGCTCTCTCAATAGTCACGAAA
CTTTCGTTGATAGTACCTCCGCAGGGAGTTCTGGTGGATGTATAGACATG
GGAACCACTTTCAGTGAGGATGGTTGGAATTCACGAACATCGCCCTGGAG
GGGAAACAAAGGGTGTAAAACACGCTATTTCTCCATGCATTGCCCCCCGA
GGACGGTTTTCGCCCCGCCCCCCCTCTGGCGTTGTAGGGGTGCGAGGGTT
CATGATACGACCACGGCCAAGCACGACTTGAGTACACCCCCGCCCCTTGC
TGAAAATGGTCTATTAGTCGTGCACAGAGAACACAATCGTGGGAATATGA
GGCCGAGGTCAAGGGTCGCCAATTGCACCCGTACGACATGTGTCCACCGA
AGTTTGTTTGTTCGGCTGACCAAAAACTTGCCTAGAAGTGTCGTCGTTCG
TCTACTGTAGTATCTCTCGGCTCCGGATGAACATACTGGCCGTGCAGAGA
GCATGCAGTCGTGGCCTCTTGAGGGTTAGCACGCGTCCCTTGCGATGAAA
ATGTGCCCGTCATTGGAAATTGCTGTTATTTGGCTGACTAAAATGCGGTT
GGAACAAGTTTTTGTCGTCAACTGTTTTAGTGGCCCTTGGTTTCCGTCTA
CCTCCCCCCTTCCAGGTTAACGGTTTCCCCGAGGAGTGGGATGGCCGAGC
TGGGAAGGCAGTGGAAGTTGTGATCAAGCGTAAGAAGGTGGACACGCAGG
CCATGTACGGAGCCTTCAAGACCAAGCTCGCAGTGCCGACATGCGTCAAA
TGCCAAGCTCCTTTCAACTACTCCTGGAGGAACGGGAGACGAGATGACGG
CGTACTCGTACGTGCAGACGGACACGGAAACACCTTAGGTTTGAGTAGGA
GCCCCCCCCGACCGACGACTTCAGCGAGCACCTGCGGGACGGATGATACA
ACAGCCGGCGGCTCTCCTGAGGCCCCATCGCGCCCGCGAATGCTGGTGAA
GATGGCAGGATCGATCCGTAAATTTGTCCTCCATCCGCGAGAGGTGTCAC
CGTCGGAAGCGACGGGACAAAGAGGGGTGGTCGACGACAGCACAGACCCA
GAGCTTTGGTACGGCAACGAGTTCCGTCGCCAGCTCAAGACCTACTTCAA
CCCCGAGCTCGAGCGACCCTCTCTGTCACTACGGGGGGGGCGCTACTCGA
TAGGCGCCAGGGTCGCCTGTTTCGCGGGGAGGGACACATGGTACCCTGGA
GCCGTGACCACCTCCCGTGAGAACAACACGTACGACGTTCGCTACGACAA
CGGGGACATCGCCCAGCACGTGTTCCCGCATATGATCCGCTTTGAGCCGA
CCCACTCGGACTCTGAGCTCCTCTGCTGCTACTACGGCCTCGCCTTGGTG
GCCGCGGCGACTTGGCCTCTCATGGGGGCCTGGTACTTCTCAACCAGCAC
CACCAGCACCACCAGCACAGAAGAAGCAGAGGGGGTGGGAGCCGTGATAG
CCGTGCCGGCGCTTATTGTGGGTGCGGCCGGCACGGTGGCCGTGGTGCTG
CAGTTCGGGGCCATTTACCGAGAGAACAAGAGCACCGGGCTTCGCATGAT
GGTGAAGTACGCGGTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1144:6029..8147-

>mRNA_M-pyrifera_M_contig1144.3004.1 ID=mRNA_M-pyrifera_M_contig1144.3004.1|Name=mRNA_M-pyrifera_M_contig1144.3004.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2670bp|location=Sequence derived from alignment at M-pyrifera_M_contig1144:6029..8147- (Macrocystis pyrifera P11B4 male)
GGCGTTTTTTTCGTTCTCGCGACAAAGGCGATTTCAGTCCCTCCCGTTTG
CGCCGGCTGTCGATTGGGGTGGGGACGCCGAGTGCACACCCTCGGCGAGG
ACGGTAGCGGAGGAGGCAGCGGCGGCGGTAGCTGCGGCAGAGACCAAGAG
GGAGACTCCTACCTCGAGGGGGGAAAGTTTTACGGAAATGCGCGCAAGGA
ACGGGCACCGCTCGGGGGTGGCAGTTCCCCTCACACATCGGCGTTTTTTT
CGTTCTCGCGACAAAGGCGATTTCAGTCCCTCCCGTTTGCGCCGGCTGTC
GATTGGGGTGGGGACGCCGAGTGCACACCCTCGGCGAGGACGGTAGCGGA
GGAGGCAGCGGCGGCGGTAGCTGCGGCAGAGACCAAGAGGGAGACTCCTA
CCTCGAGGGGGGAAAGTTTTACGGAAATGCGCGCAAGGAACGGGCACCGC
TCGGGGGTGGCAGTTCCCCTCACACATCGAGCGCTGACGGCGAGGGTGGA
GGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCCGGGGGGAGTCAACGG
GACATTCCCGAAAAAAACAACAAAACTTGCACTGCCGGCCAGACACTGGA
TGTGCACCGTGTGCAAGAAGGAGCGCTGACGGCGAGGGTGGAGGTGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGGCCGGGGGGAGTCAACGGGACATTCC
CGAAAAAAACAACAAAACTTGCACTGCCGGCCAGACACTGGATGTGCACC
GTGTGCAAGAAGGTTAACGGTTTCCCCGAGGAGTGGGATGGCCGAGCTGG
GAAGGCAGTGGAAGTTGTGATCAAGCGTAAGAAGGTGGACACGCAGGCCA
TGTACGGAGCCTTCAAGACCAAGCTCGCAGTGCCGACATGCGTCAAATGC
CAAGCTCCTTTCAACTACTCCTGGAGGAACGGGAGACGAGATGACGGCGT
ACTCGTACGTGCAGACGGACACGGAAACACCTTAGGTTTGAGTAGGAGCC
CCCCCCGACCGACGACTTCAGCGAGCACCTGCGGGACGGATGATACAACA
GCCGGCGGCTCTCCTGAGGCCCCATCGCGCCCGCGAATGCTGGTGAAGAT
GGCAGGATCGATCCGTAAATTTGTCCTCCATCCGCGAGAGGTGTCACCGT
CGGAAGCGACGGGACAAAGAGGGGTGGTCGACGACAGCACAGACCCAGAG
CTTTGGTACGGCAACGAGTTCCGTCGCCAGCTCAAGACCTACTTCAACCC
CGAGCTCGAGCGACCCTCTCTGTCACTACGGGGGGGGCGCTACTCGATAG
GCGCCAGGGTCGCCTGTTTCGCGGGGAGGGACACATGGTACCCTGGAGCC
GTGACCACCTCCCGTGAGAACAACACGTACGACGTTCGCTACGACAACGG
GGACATCGCCCAGCACGTGTTCCCGCATATGATCCGCTTTGAGCCGACCC
ACTCGGACTCTGAGCTCCTCTGCTGCTACTACGGCCTCGCCTTGGTGGCC
GCGGCGACTTGGCCTCTCATGGGGGCCTGGTACTTCTCAACCAGCACCAC
CAGCACCACCAGCACAGAAGAAGCAGAGGGGGTGGGAGCCGTGATAGCCG
TGCCGGCGCTTATTGTGGGTGCGGCCGGCACGGTGGCCGTGGTGCTGCAG
TTCGGGGCCATTTACCGAGAGAACAAGAGCACCGGGCTTCGCATGATGGT
GAAGTACGCGGTCGTGGTTAACGGTTTCCCCGAGGAGTGGGATGGCCGAG
CTGGGAAGGCAGTGGAAGTTGTGATCAAGCGTAAGAAGGTGGACACGCAG
GCCATGTACGGAGCCTTCAAGACCAAGCTCGCAGTGCCGACATGCGTCAA
ATGCCAAGCTCCTTTCAACTACTCCTGGAGGAACGGGAGACGAGATGACG
GCGTACTCGTACGTGCAGACGGACACGGAAACACCTTAGGTTTGAGTAGG
AGCCCCCCCCGACCGACGACTTCAGCGAGCACCTGCGGGACGGATGATAC
AACAGCCGGCGGCTCTCCTGAGGCCCCATCGCGCCCGCGAATGCTGGTGA
AGATGGCAGGATCGATCCGTAAATTTGTCCTCCATCCGCGAGAGGTGTCA
CCGTCGGAAGCGACGGGACAAAGAGGGGTGGTCGACGACAGCACAGACCC
AGAGCTTTGGTACGGCAACGAGTTCCGTCGCCAGCTCAAGACCTACTTCA
ACCCCGAGCTCGAGCGACCCTCTCTGTCACTACGGGGGGGGCGCTACTCG
ATAGGCGCCAGGGTCGCCTGTTTCGCGGGGAGGGACACATGGTACCCTGG
AGCCGTGACCACCTCCCGTGAGAACAACACGTACGACGTTCGCTACGACA
ACGGGGACATCGCCCAGCACGTGTTCCCGCATATGATCCGCTTTGAGCCG
ACCCACTCGGACTCTGAGCTCCTCTGCTGCTACTACGGCCTCGCCTTGGT
GGCCGCGGCGACTTGGCCTCTCATGGGGGCCTGGTACTTCTCAACCAGCA
CCACCAGCACCACCAGCACAGAAGAAGCAGAGGGGGTGGGAGCCGTGATA
GCCGTGCCGGCGCTTATTGTGGGTGCGGCCGGCACGGTGGCCGTGGTGCT
GCAGTTCGGGGCCATTTACCGAGAGAACAAGAGCACCGGGCTTCGCATGA
TGGTGAAGTACGCGGTCGTG
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