mRNA_M-pyrifera_M_contig101436.300.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101436.300.1
Unique NamemRNA_M-pyrifera_M_contig101436.300.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: A0A2R2MSS4_LINUN (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MSS4_LINUN)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-20
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:    1 ATRSLSSGVGGLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKD--CLYVALARLF---ERQSLLQAVTTSDLKNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            A     S + G +NLGNTC+MNA+LQ+L G+ PFA DLL+   +  + + KD   LY+AL RL    +RQ          L+NVK AI+ +A++F+GN Q DAHEFLCQ++DQ++
Sbjct:  195 AVNKQQSELQGFSNLGNTCYMNAILQSLYGLEPFAADLLKTKSVFFKMMNKDPPSLYLALYRLLLAKKRQGKSPEKKRELLRNVKQAISSSAKRFSGNEQHDAHEFLCQVIDQLK 309
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: A0A6P8HPN9_ACTTE (ubiquitin carboxyl-terminal hydrolase 37-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HPN9_ACTTE)

HSP 1 Score: 92.0 bits (227), Expect = 2.010e-19
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLF--ERQSLLQAVTTSDLKNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G +NLGNTC+MNA+LQ+L+GI PFA+DL  R +LD   +Q  CLY     L   ++ S  Q + +  LK  K  I++ A +F+G+ Q DAHEFLCQ++DQ++
Sbjct:  302 GFSNLGNTCYMNAILQSLLGIDPFAQDLCNRKLLDKIPMQ--CLYKCTYGLLACKKNSCQQDLQSLHLKKFKKTISQAATRFSGHLQHDAHEFLCQVLDQLK 401
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: UPI001B888D97 (ubiquitin carboxyl-terminal hydrolase 37-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888D97)

HSP 1 Score: 89.4 bits (220), Expect = 1.760e-18
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLFERQSLLQA--VTTSD-LKNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G +NLGNTC+MNA+LQ+L+G+ PF+ D+L  +   H  L    LY ALARL   +  L    +T  D L+N+K AI+  AR+F+G  Q DAHEFL Q++DQ++
Sbjct:  261 GFSNLGNTCYMNAILQSLLGLDPFSNDVLYTNRKIHRLLSPTSLYGALARLMNSRCKLTGNDLTRRDMLRNIKSAISSTARRFSGYQQHDAHEFLGQVLDQLK 363
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: UPI0009E4EB35 (ubiquitin carboxyl-terminal hydrolase 37-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4EB35)

HSP 1 Score: 83.2 bits (204), Expect = 6.300e-18
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILD--HEELQKDCLYVALARLFERQSLLQAVTTSDLKNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G +NLGNTC+MNA+LQ+L+G+PPF +DL  + +L+  H +   +CLY  L    +++     V  + L+ +K  I+  A +F+G  Q DAHEFLCQ+ DQ++
Sbjct:   35 GFSNLGNTCYMNAILQSLLGVPPFVQDLSNKALLENVHPQGLYNCLYNVLC--CKKKCGNPEVLKTCLRKLKKTISEAATRFSGYHQHDAHEFLCQVFDQLK 134
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: A0A8B8CXS1_CRAVI (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CXS1_CRAVI)

HSP 1 Score: 86.3 bits (212), Expect = 2.120e-17
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:   16 SSGVGGLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLF-ERQSLLQAVTTSDL-KNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            SS + G +NLGNTC+MNA+LQAL  + PF +DL+  +      L +  LY +L RL   R+ ++  +T  DL ++VK AI+ +A++F+G  Q DAHEFL Q++DQ++
Sbjct:  262 SSQLSGFSNLGNTCYMNAILQALFHLEPFTRDLVNINRRISRSLPQQSLYQSLVRLHGSRKRIVSDITKRDLLRSVKQAISSSAKRFSGYQQHDAHEFLSQVLDQLK 368
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: A0A8C5VFG3_MICMU (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Microcebus murinus TaxID=30608 RepID=A0A8C5VFG3_MICMU)

HSP 1 Score: 85.5 bits (210), Expect = 3.920e-17
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLFERQSLLQAVTTSDLK-NVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G  NLGNTC+MNA+LQ+L  +P FA DLL +  L  E++  D L ++L+ LF  + +    T  +L  NVK+AI+  A  F+GN Q DAHEFL Q +DQ++
Sbjct:  281 GFPNLGNTCYMNAILQSLFAVPSFANDLLMQG-LPWEKIPSDSLIMSLSMLFALKDICNRETQKELLVNVKNAISAVAEIFSGNVQNDAHEFLGQCLDQLK 380
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BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: UPI001CF5858C (ubiquitin carboxyl-terminal hydrolase 37-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF5858C)

HSP 1 Score: 85.5 bits (210), Expect = 3.960e-17
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILD--HEELQKDCLYVALARLFERQSLLQAVTTSDLKNVKDAIARNARQFAGNFQQDAHEFLCQLVDQM 327
            G +NLGNTC+MNA+LQ+L+GIPPF +DL    +LD  H +    CLY  +  L +++     V  + L+ +K  I+  A +F+G  Q DAHEFLCQ+ DQ+
Sbjct:  272 GFSNLGNTCYMNAILQSLLGIPPFVQDLSNLALLDNVHPQCLYKCLYNVM--LCKKKCQNADVIRNSLRKLKRTISEAATRFSGYHQHDAHEFLCQVFDQL 370
[Close]
BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: UPI001E266F73 (ubiquitin carboxyl-terminal hydrolase 29 n=1 Tax=Lemur catta TaxID=9447 RepID=UPI001E266F73)

HSP 1 Score: 85.1 bits (209), Expect = 5.350e-17
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLFERQSLLQAVTTSDLK-NVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G  NLGNTC+MNA+LQ+L  +P FA DLL +  L  E++  D + ++L+ LF  +++    T  +L  NVK+AI+  A  F+GN Q DAHEFL Q +DQ++
Sbjct:  293 GFPNLGNTCYMNAILQSLFAVPSFADDLLMQG-LPWEKIPSDSVIMSLSMLFALKNICDRQTQEELLVNVKNAISAVAEVFSGNMQNDAHEFLGQCLDQLK 392
[Close]
BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: A0A3M6UHA8_POCDA (USP domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UHA8_POCDA)

HSP 1 Score: 84.3 bits (207), Expect = 1.000e-16
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLF--ERQSLLQAVTTSDLKNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G +NLGNTC+MNA+LQ+L+G+PPF +DL  R +L  E +   CLY  L  +   +R+     V  + L+ +K  I+  A +F+G  Q DAHEFLCQ+ DQ++
Sbjct:  181 GFSNLGNTCYMNAILQSLLGLPPFVQDLSNRALL--ENVLPHCLYKCLHSVLMCKRKCGNPEVLKNCLRKLKRTISEAATRFSGYHQHDAHEFLCQVFDQLK 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Match: UPI0007EE4D09 (ubiquitin carboxyl-terminal hydrolase 29-like n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE4D09)

HSP 1 Score: 83.6 bits (205), Expect = 1.820e-16
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   31 GLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQKDCLYVALARLFERQSLLQAVTTSDL-KNVKDAIARNARQFAGNFQQDAHEFLCQLVDQME 330
            G  NLGNTC+MN++LQ+L  IP FA  LL + I   E +  D L + L+ L   + +    T+ DL +++K+AI+  A  F+GN Q DAHEFLCQ +DQ++
Sbjct:  202 GFPNLGNTCYMNSILQSLYAIPSFADGLLGQGI-PWENIPSDVLIMPLSMLLALKDICNLETSQDLLRDIKNAISAVAEIFSGNMQNDAHEFLCQCLDQLK 301
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101436.300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R2MSS4_LINUN1.660e-2046.09Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ling... [more]
A0A6P8HPN9_ACTTE2.010e-1947.06ubiquitin carboxyl-terminal hydrolase 37-like n=1 ... [more]
UPI001B888D971.760e-1847.57ubiquitin carboxyl-terminal hydrolase 37-like isof... [more]
UPI0009E4EB356.300e-1842.16ubiquitin carboxyl-terminal hydrolase 37-like n=1 ... [more]
A0A8B8CXS1_CRAVI2.120e-1743.93Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Cras... [more]
A0A8C5VFG3_MICMU3.920e-1746.53Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Micr... [more]
UPI001CF5858C3.960e-1744.55ubiquitin carboxyl-terminal hydrolase 37-like n=2 ... [more]
UPI001E266F735.350e-1745.54ubiquitin carboxyl-terminal hydrolase 29 n=1 Tax=L... [more]
A0A3M6UHA8_POCDA1.000e-1644.12USP domain-containing protein n=2 Tax=Pocillopora ... [more]
UPI0007EE4D091.820e-1644.55ubiquitin carboxyl-terminal hydrolase 29-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101436contigM-pyrifera_M_contig101436:341..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score83.2
Seed ortholog evalue8.4e-14
Seed eggNOG ortholog9986.ENSOCUP00000019875
Preferred nameUSP29
KEGG koko:K11850
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0019783,GO:0036459,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0101005,GO:0140096,GO:1901564
EggNOG free text desc.Belongs to the peptidase C19 family
EggNOG OGs35H13@314146,39UU7@33154,3BK0C@33208,3D15K@33213,3JG2H@40674,48DU3@7711,49AKR@7742,KOG1868@1,KOG1868@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.3055785-CDS-M-pyrifera_M_contig101436:340..6701622815512.3055785-CDS-M-pyrifera_M_contig101436:340..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101436 341..670 +
1692277444.8973851-CDS-M-pyrifera_M_contig101436:340..6701692277444.8973851-CDS-M-pyrifera_M_contig101436:340..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101436 341..670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101436.300.1prot_M-pyrifera_M_contig101436.300.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101436 341..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101436.300.1

>prot_M-pyrifera_M_contig101436.300.1 ID=prot_M-pyrifera_M_contig101436.300.1|Name=mRNA_M-pyrifera_M_contig101436.300.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
ATRSLSSGVGGLANLGNTCFMNAVLQALMGIPPFAKDLLQRDILDHEELQ
KDCLYVALARLFERQSLLQAVTTSDLKNVKDAIARNARQFAGNFQQDAHE
FLCQLVDQME
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mRNA from alignment at M-pyrifera_M_contig101436:341..670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101436.300.1 ID=mRNA_M-pyrifera_M_contig101436.300.1|Name=mRNA_M-pyrifera_M_contig101436.300.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig101436:341..670+ (Macrocystis pyrifera P11B4 male)
GCGACGCGCTCGCTTTCGTCGGGGGTGGGTGGCCTCGCCAACCTGGGCAA
TACCTGCTTCATGAACGCCGTACTGCAAGCACTCATGGGCATTCCTCCCT
TCGCCAAGGATCTGCTCCAGAGAGATATTCTGGACCATGAGGAGCTGCAG
AAGGACTGCCTCTACGTAGCCCTCGCCCGTCTCTTCGAACGGCAGAGCCT
GTTGCAGGCGGTCACAACCAGTGACTTGAAGAACGTGAAAGATGCCATTG
CAAGGAATGCGAGACAGTTCGCGGGCAACTTTCAACAAGACGCTCACGAA
TTTCTGTGTCAGCTGGTGGATCAGATGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101436:341..670+

>mRNA_M-pyrifera_M_contig101436.300.1 ID=mRNA_M-pyrifera_M_contig101436.300.1|Name=mRNA_M-pyrifera_M_contig101436.300.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig101436:341..670+ (Macrocystis pyrifera P11B4 male)
GCGACGCGCTCGCTTTCGTCGGGGGTGGGTGGCCTCGCCAACCTGGGCAA
TACCTGCTTCATGAACGCCGTACTGCAAGCACTCATGGGCATTCCTCCCT
TCGCCAAGGATCTGCTCCAGAGAGATATTCTGGACCATGAGGAGCTGCAG
AAGGACTGCCTCTACGTAGCCCTCGCCCGTCTCTTCGAACGGCAGAGCCT
GTTGCAGGCGGTCACAACCAGTGACTTGAAGAACGTGAAAGATGCCATTG
CAAGGAATGCGAGACAGTTCGCGGGCAACTTTCAACAAGACGCTCACGAA
TTTCTGTGTCAGCTGGTGGATCAGATGGAGGCGACGCGCTCGCTTTCGTC
GGGGGTGGGTGGCCTCGCCAACCTGGGCAATACCTGCTTCATGAACGCCG
TACTGCAAGCACTCATGGGCATTCCTCCCTTCGCCAAGGATCTGCTCCAG
AGAGATATTCTGGACCATGAGGAGCTGCAGAAGGACTGCCTCTACGTAGC
CCTCGCCCGTCTCTTCGAACGGCAGAGCCTGTTGCAGGCGGTCACAACCA
GTGACTTGAAGAACGTGAAAGATGCCATTGCAAGGAATGCGAGACAGTTC
GCGGGCAACTTTCAACAAGACGCTCACGAATTTCTGTGTCAGCTGGTGGA
TCAGATGGAG
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