mRNA_M-pyrifera_M_contig114353.2997.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A3C0HSC0_9ACTN (Ribonuclease PH n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HSC0_9ACTN) HSP 1 Score: 297 bits (761), Expect = 4.310e-100 Identity = 153/175 (87.43%), Postives = 158/175 (90.29%), Query Frame = 1
Query: 1 PERVNRERRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPRSPGR 525
PER+NRERRGAKGRTQEIERLIGRSLRAVTDMRALGE SIRLDCDVLQADGGTRTASICGA+VALHDACERLVQ G I NPL TEC AISVGIVDG PVLDLPYPEDSTADVDFNVIM G GQLIEVQGTAEGNTF RAELD LLDLAEGG+ATI AQR LA AP+PR+PGR
Sbjct: 75 PERINRERRGAKGRTQEIERLIGRSLRAVTDMRALGETSIRLDCDVLQADGGTRTASICGAYVALHDACERLVQAGHIPANPLTTECVAISVGIVDGRPVLDLPYPEDSTADVDFNVIMDGNGQLIEVQGTAEGNTFSRAELDVLLDLAEGGVATIAEAQRAVLADAPAPRTPGR 249
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A5Q2RLF6_9ACTN (Ribonuclease PH n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RLF6_9ACTN) HSP 1 Score: 236 bits (603), Expect = 4.650e-76 Identity = 124/173 (71.68%), Postives = 137/173 (79.19%), Query Frame = 1
Query: 1 PERVNRERRGAK--GRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPR 513
PER+ RE + K GRTQEI+RLIGR+LRAVTDM ALGE I LDCDVLQADGGTRTASICGA+VALHDAC RLV G +A NP+ CAAISVGI+DG P LDLPY EDS A+VD NV+MTG G +EVQGTAEG + RAELDALL LAEGGIATI QRE +A AP PR
Sbjct: 78 PERIRREVKDGKPSGRTQEIQRLIGRALRAVTDMEALGERQILLDCDVLQADGGTRTASICGAWVALHDACSRLVATGRLAANPITDACAAISVGIIDGQPRLDLPYEEDSRAEVDMNVVMTGAGGFVEVQGTAEGAPYSRAELDALLGLAEGGIATIVGMQREVVAAAPDPR 250
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A7X6ART5_9ACTN (Ribonuclease PH (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ART5_9ACTN) HSP 1 Score: 238 bits (606), Expect = 5.620e-76 Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 1
Query: 1 PERVNRERRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLA 495
PERV R R G GR+QEI+RLIGRSLRAVTD++ALGE SI +DCDVLQADGGTRTASICGA+VALHDAC RLVQ G + +PLVTECAAISVGIVDG P+LDLPY ED ADVDFNV+MTGTG LIEVQGTAEG F R +LD +LDLA GI+ I AQR LA
Sbjct: 74 PERVRRPRTGPNGRSQEIQRLIGRSLRAVTDLKALGEVSIDIDCDVLQADGGTRTASICGAYVALHDACSRLVQAGLMEADPLVTECAAISVGIVDGMPMLDLPYREDVAADVDFNVVMTGTGNLIEVQGTAEGEPFSREQLDQILDLAAKGISEINEAQRAVLA 238
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A6B1AVU3_9ACTN (Ribonuclease PH n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AVU3_9ACTN) HSP 1 Score: 231 bits (590), Expect = 2.790e-74 Identity = 124/172 (72.09%), Postives = 132/172 (76.74%), Query Frame = 1
Query: 1 PERVNRERRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPRS 516
PER+ RR GR QEI+RLIGRSLR V DM ALGE SI +DCDVL ADGGTRTASICG +VALHDACERLV G I NPL TECAAISVGIVDG P+LDLPY EDSTADVDFNV+MTG G LIEVQGTAEG F R EL A+LDLA GI I AQR L T P PR+
Sbjct: 65 PERI---RRRTSGRDQEIQRLIGRSLRCVIDMAALGERSITVDCDVLSADGGTRTASICGGYVALHDACERLVLAGQIPGNPLFTECAAISVGIVDGRPLLDLPYLEDSTADVDFNVVMTGDGSLIEVQGTAEGKAFSRDELTAMLDLAAKGITEINEAQRAVLRTPPEPRA 233
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A3S0DTR6_9ACTN (Ribonuclease PH n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A3S0DTR6_9ACTN) HSP 1 Score: 226 bits (575), Expect = 7.050e-72 Identity = 118/175 (67.43%), Postives = 138/175 (78.86%), Query Frame = 1
Query: 1 PERVNRERRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPRSPGR 525
PER+ RE +G KGRTQEI+RLIGR+LR+V DM+ALGE I +DCDVLQADGGTRTASI GA++ALHD R+VQ G +++ PL E AAISVG+VDG PVLDLPY EDSTA+ D NV+MTG G +EVQGTAEG F R ELD+LL LAEGGI I A QR+ LA AP+PR GR
Sbjct: 71 PERIRRETKGPKGRTQEIQRLIGRALRSVCDMKALGERQILIDCDVLQADGGTRTASISGAYLALHDCLTRVVQAGLLSEVPLYDELAAISVGVVDGVPVLDLPYTEDSTAETDMNVVMTGKGLFVEVQGTAEGAPFSRDELDSLLGLAEGGIRRIHALQRKYLAEAPTPRPIGR 245
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A7Y2GKH5_9ACTN (Ribonuclease PH n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKH5_9ACTN) HSP 1 Score: 225 bits (573), Expect = 1.170e-71 Identity = 118/171 (69.01%), Postives = 136/171 (79.53%), Query Frame = 1
Query: 1 PERVNRERRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPR 513
PERV RR GRTQEI+RLIGRSLR+V D A+GE S+ +DCDVLQADGGTRTASICG +VALHDA ERL+QGG + NP++TECAAISVGIVDG P+LDLPY ED+ A+VD NV++ G+G IEVQGTAEG TF RAELDALL LAE G+A I AQR+ L T P R
Sbjct: 71 PERV---RRRVSGRTQEIQRLIGRSLRSVVDFEAMGEVSVIVDCDVLQADGGTRTASICGGYVALHDALERLIQGGQLGANPIMTECAAISVGIVDGEPLLDLPYIEDANAEVDMNVVIVGSGAYIEVQGTAEGATFSRAELDALLGLAEKGVAEIIDAQRDLLQTPPELR 238
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A2E7NHQ5_9BACT (Ribonuclease PH n=6 Tax=root TaxID=1 RepID=A0A2E7NHQ5_9BACT) HSP 1 Score: 219 bits (557), Expect = 3.140e-69 Identity = 111/165 (67.27%), Postives = 130/165 (78.79%), Query Frame = 1
Query: 22 RRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPRS 516
RR GR+QEI+RLI RSLRAV D+ LGE + +DCDV+QADGGTRTASICG F+ALHDA ERLV G +A NPL + AA+SVGIV+G P LDLPY EDSTA+VDFNV+MTG+G+ +EVQGTAEG FDRA+LDAL+DLA GGIA I AQR LA P R+
Sbjct: 75 RRRVSGRSQEIQRLIARSLRAVCDLEVLGEREVTVDCDVIQADGGTRTASICGGFIALHDALERLVVSGDLAANPLTDQLAAVSVGIVEGEPRLDLPYVEDSTAEVDFNVVMTGSGRFVEVQGTAEGEAFDRAQLDALVDLATGGIAEIAEAQRALLADPPPART 239
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A2E9XE16_9ACTN (Ribonuclease PH n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XE16_9ACTN) HSP 1 Score: 218 bits (556), Expect = 4.590e-69 Identity = 115/167 (68.86%), Postives = 132/167 (79.04%), Query Frame = 1
Query: 4 ERVNRERRGAK--GRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLAT 498
ERVNRE + K GRT EIERLIGRSLRA+ DM+ LGE + +DCDVLQADGGTRTASICG FVALHDAC L++ G I +PL CAAISVGIVDG+P LDLPY EDSTA VD NV+MTG+G+ +EVQGTAEG+ FDR+ELDAL LAE GI+ I A Q+E L T
Sbjct: 72 ERVNRESKKGKQKGRTLEIERLIGRSLRAICDMKLLGEREVTVDCDVLQADGGTRTASICGGFVALHDACTSLMERGLIKVHPLTDFCAAISVGIVDGTPKLDLPYVEDSTASVDMNVVMTGSGRFVEVQGTAEGDPFDRSELDALTSLAEKGISEIIAMQKEILGT 238
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A0G3V456_9ACTN (Ribonuclease PH n=6 Tax=root TaxID=1 RepID=A0A0G3V456_9ACTN) HSP 1 Score: 218 bits (556), Expect = 5.730e-69 Identity = 117/174 (67.24%), Postives = 135/174 (77.59%), Query Frame = 1
Query: 1 PERVNRERRGAK--GRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPRS 516
PERV+RE K GRTQEI+RLIGRSLRAVTD+ ALGE I +DCD LQADGGTRTA+ICG ++ALHDACER+VQ G + NP+ CAA+SVGIV P LDL Y EDS+A+VD NV+MTG G+ IEVQGTAEG F R ELD+LL LAEGGIA + A QRE L+ PSPRS
Sbjct: 73 PERVSREAAKGKQSGRTQEIQRLIGRSLRAVTDLVALGEFQITVDCDALQADGGTRTAAICGGYLALHDACERMVQQGRLRINPVGELCAAVSVGIVGALPSLDLDYVEDSSAEVDMNVVMTGDGKFIEVQGTAEGAAFSRGELDSLLGLAEGGIAELFAMQREMLSVPPSPRS 246
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Match: A0A7W0QXI1_9ACTN (Ribonuclease PH n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0QXI1_9ACTN) HSP 1 Score: 218 bits (556), Expect = 5.730e-69 Identity = 118/176 (67.05%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 4 ERVNRERRGAK--GRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADGGTRTASICGAFVALHDACERLVQGGAIAKNPLVTECAAISVGIVDGSPVLDLPYPEDSTADVDFNVIMTGTGQLIEVQGTAEGNTFDRAELDALLDLAEGGIATITAAQRETLATAPSPRSPGR 525
ER+ RE K GRTQEI+RLIGRSLR+V DM LGE + +DCDVLQADGGTRTA+ICG +VALHDA RLVQ G I NPL C AISVGIV G+ +LDLPY EDS A VD NV+MTG GQ IEVQGTAEG +F R ELD LL LAE GIA I Q E LAT P+PR+PGR
Sbjct: 72 ERIGREAAKGKQSGRTQEIQRLIGRSLRSVCDMSVLGERQVIVDCDVLQADGGTRTAAICGGYVALHDAFTRLVQNGRITANPLTDSCGAISVGIVGGTALLDLPYEEDSRAGVDMNVVMTGAGQFIEVQGTAEGKSFSREELDRLLGLAEVGIAEIGRLQTELLATPPTPRAPGR 247 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114353.2997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig114353.2997.1 >prot_M-pyrifera_M_contig114353.2997.1 ID=prot_M-pyrifera_M_contig114353.2997.1|Name=mRNA_M-pyrifera_M_contig114353.2997.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp PERVNRERRGAKGRTQEIERLIGRSLRAVTDMRALGEHSIRLDCDVLQADback to top mRNA from alignment at M-pyrifera_M_contig114353:3..530+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig114353.2997.1 ID=mRNA_M-pyrifera_M_contig114353.2997.1|Name=mRNA_M-pyrifera_M_contig114353.2997.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig114353:3..530+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig114353:3..530+ >mRNA_M-pyrifera_M_contig114353.2997.1 ID=mRNA_M-pyrifera_M_contig114353.2997.1|Name=mRNA_M-pyrifera_M_contig114353.2997.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig114353:3..530+ (Macrocystis pyrifera P11B4 male)back to top |