mRNA_M-pyrifera_M_contig114343.2995.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114343.2995.1
Unique NamemRNA_M-pyrifera_M_contig114343.2995.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A3B9DH78_9PROT (Methylmalonyl-CoA carboxyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9DH78_9PROT)

HSP 1 Score: 285 bits (728), Expect = 2.380e-91
Identity = 143/191 (74.87%), Postives = 160/191 (83.77%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVEGS-YQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THAAKICK+MD+A+ VG PVIGLNDSGGARIQEG+ SL GYAEVFQRNV ASGVVPQIS++MGPCAGGAVYSPA+TDF FMVEGS Y FVTGP VVKTVT+ED+T+EELGGA  HT  SGVAHG+FAND+E LL  R LF YLPLSNREAPP LPS DP +R    L G IP +PN PYDM+ V+ EIVD+
Sbjct:  103 THAAKICKIMDQAMKVGVPVIGLNDSGGARIQEGVASLGGYAEVFQRNVLASGVVPQISLVMGPCAGGAVYSPAITDFIFMVEGSSYMFVTGPDVVKTVTHEDLTAEELGGASQHTKTSGVAHGSFANDLEMLLGTRALFSYLPLSNREAPPELPSLDPVDRPSAALDGIIPANPNTPYDMKHVVAEIVDD 293          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A812Z5R2_SYMMI (PccB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z5R2_SYMMI)

HSP 1 Score: 275 bits (704), Expect = 4.750e-91
Identity = 137/191 (71.73%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVEG-SYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THA KICKVMD A+ VGAPVIGLNDSGGARIQEG+DSLAGYA+VFQRNVDASGV+PQIS+IMGPCAGGAVYSPAMTDF FMV+  SY FVTGP+VVKTVT ED+T EELGGA+THT  SGVAHGAFANDVEAL  +R+L+ YLPL+NR+  P +P+ D  +R  E L   +P DPN+PY+M+ ++ ++VDE
Sbjct:   40 THAQKICKVMDMAMRVGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGVIPQISMIMGPCAGGAVYSPAMTDFIFMVQRTSYMFVTGPNVVKTVTMEDVTQEELGGAETHTSLSGVAHGAFANDVEALRALRQLYSYLPLNNRDGVPHVPTDDKRDRLEESLRFLVPDDPNIPYEMRELVSKVVDE 230          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A7S3LK18_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK18_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.920e-90
Identity = 144/191 (75.39%), Postives = 161/191 (84.29%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMV-EGSYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THA KICK+MDKA+ VGAPVIGLNDSGGARIQEG+DSLAGYA+VFQRNV+ASGV+PQ+SVIMGPCAGGAVYSPA+TDF  MV + SY FVTGP VVKTVTNE++T EELGGAK+HT KSGV+H AF NDVEAL   RELFDYLPLSNRE PP  P+ DP ER    L   IP+DPNVPYDM  VI +IVD+
Sbjct:  137 THAQKICKIMDKAMSVGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVEASGVIPQLSVIMGPCAGGAVYSPAITDFIMMVRDTSYMFVTGPEVVKTVTNEEVTQEELGGAKSHTQKSGVSHLAFDNDVEALKMTRELFDYLPLSNREEPPSRPTKDPIERADPTLDLIIPSDPNVPYDMVTVISKIVDD 327          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: G5ZX79_9PROT (Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=G5ZX79_9PROT)

HSP 1 Score: 278 bits (712), Expect = 6.040e-89
Identity = 139/191 (72.77%), Postives = 160/191 (83.77%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVEGS-YQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THAAKICK+MD+AL VG PV+GLNDSGGARIQEG+ SL GYAEVFQRNV ASGVVPQIS++MGPCAGGAVYSPA+TDF FMVEGS Y FVTGP VVKTVT+ED+T+EELGGA  HT  SGVAHGAFAND++ L+Q R L  +LPLSNRE  PVL + DP +R    L G IP +PN+PYDM+ V+REIVD+
Sbjct:  103 THAAKICKIMDQALKVGVPVVGLNDSGGARIQEGVASLGGYAEVFQRNVLASGVVPQISLVMGPCAGGAVYSPAITDFIFMVEGSSYMFVTGPDVVKTVTHEDLTAEELGGASQHTKTSGVAHGAFANDLDMLMQTRRLMSFLPLSNREEAPVLQTTDPVDRPSAVLDGIIPDNPNMPYDMKKVVREIVDD 293          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A5A8EFN3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EFN3_CAFRO)

HSP 1 Score: 278 bits (711), Expect = 2.510e-88
Identity = 140/191 (73.30%), Postives = 159/191 (83.25%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMV-EGSYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THA KICK+MD+A+ VGAPVIGLNDSGGARIQEG+DSLAGYAEVFQRNVDASGVVPQ+++IMGPCAGGAVYSPAMTDFTFMV + SY FVTGP VVKTVT E +T E LGGAKTHT KSGV+H AF NDVEAL  MRE   +LP SNR   P +   D A R C+ L G +PTDPNVPYDM++V+RE++DE
Sbjct:  149 THAEKICKIMDRAVEVGAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGVVPQLTLIMGPCAGGAVYSPAMTDFTFMVRDTSYMFVTGPDVVKTVTQETVTQEVLGGAKTHTSKSGVSHLAFDNDVEALRGMREFVSFLPSSNRVPAPHVDPNDSATRSCDMLEGLVPTDPNVPYDMKVVVREVLDE 339          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A7S0SX47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX47_9STRA)

HSP 1 Score: 269 bits (688), Expect = 5.220e-88
Identity = 135/190 (71.05%), Postives = 157/190 (82.63%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVE-GSYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVD 567
            THA KICKVMD A+ VGAPVIGLNDSGGARIQEGIDSL GYA+VF +NV+ASG++PQISVIMGPCAGGAVYSPAMTDF FMV+  SY FVTGPSVVKTVT ED+T EELGGA+THT  SGVAHGAF ND+ AL ++RELF YLPL+N+ A PVL S D   R    L+  +P DPN+PYDM  +++++VD
Sbjct:  111 THAQKICKVMDMAMKVGAPVIGLNDSGGARIQEGIDSLGGYADVFLKNVNASGIIPQISVIMGPCAGGAVYSPAMTDFIFMVKRSSYMFVTGPSVVKTVTQEDVTQEELGGAETHTSLSGVAHGAFDNDIIALEKIRELFQYLPLNNKLAAPVLESDDDRNRQENSLNYLVPDDPNIPYDMLAIVKKVVD 300          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A369TBX6_9PROT (Acyl-CoA carboxylase subunit beta n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TBX6_9PROT)

HSP 1 Score: 274 bits (701), Expect = 2.710e-87
Identity = 140/191 (73.30%), Postives = 159/191 (83.25%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVE-GSYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            +HA KICKVMDKAL VGAPVIGLNDSGGARIQEG+DSLAGYAEVFQRNV+ASGVVPQ+S+IMGPCAGGAVYSPAMTDF FMV+  SY FVTGP VVKTVT+E +TSEELGGA THT KSGVA  AF NDVEAL + R++FD+LPLSNRE PPV P+ D   R+   L   +P  PN PYDM+ +I ++VDE
Sbjct:  103 SHAEKICKVMDKALQVGAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVEASGVVPQLSLIMGPCAGGAVYSPAMTDFIFMVQDSSYMFVTGPEVVKTVTHETVTSEELGGAITHTSKSGVADLAFENDVEALQRTRQIFDFLPLSNREQPPVRPTTDSPNREEPSLDTLVPPSPNKPYDMKELIEKVVDE 293          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A7S4BL14_CHRCT (Hypothetical protein (Fragment) n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BL14_CHRCT)

HSP 1 Score: 271 bits (693), Expect = 4.980e-87
Identity = 137/191 (71.73%), Postives = 157/191 (82.20%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVEGS-YQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THA KICK+MD+A+LVGAPVIGLNDSGGARIQEG+ SLAGYAEVFQRNVDASGVVPQ+SVIMGPCAGGAVYSPAMTDFT MVE S Y FVTGP VVKTVTNE++TSE LGGA+THT  SGVAH +  ND+EAL++MR L  +LP SNRE PP   + DP  R  E L   +P DPNVPYDM  ++R ++D+
Sbjct:  169 THAEKICKIMDQAVLVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVDASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMFVTGPEVVKTVTNEEVTSEVLGGARTHTRTSGVAHLSALNDLEALMKMRSLVSFLPSSNREPPPTRHTEDPRNRADEALETMVPQDPNVPYDMGDLVRRVLDD 359          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: A0A0F2RAK7_9PROT (Methylmalonyl-CoA carboxyltransferase n=4 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A0F2RAK7_9PROT)

HSP 1 Score: 273 bits (698), Expect = 7.650e-87
Identity = 140/191 (73.30%), Postives = 161/191 (84.29%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMV-EGSYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THA KICKVMD+A+ VGAPVIGLNDSGGARIQEG+DSLAGYAEVFQRNV ASGV+PQISVIMGPCAGGAVYSPAMTD   MV + SY FVTGP VVKTVT+E +T+EELGGA THT KSGVA  AF NDVEALLQ+R L D+LP +N+E PPV P+ADPA+R+   L   IP +PN+PYDM+ +I ++VDE
Sbjct:  103 THAEKICKVMDQAMKVGAPVIGLNDSGGARIQEGMDSLAGYAEVFQRNVMASGVIPQISVIMGPCAGGAVYSPAMTDIIAMVKDSSYMFVTGPDVVKTVTHEVVTAEELGGAVTHTAKSGVAELAFDNDVEALLQIRRLMDFLPANNKEKPPVRPTADPADREDFSLDTLIPNNPNMPYDMKELITKVVDE 293          
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Match: H6SN44_PARPM (Carboxyl transferase n=2 Tax=Pararhodospirillum TaxID=1612157 RepID=H6SN44_PARPM)

HSP 1 Score: 273 bits (698), Expect = 7.650e-87
Identity = 139/191 (72.77%), Postives = 158/191 (82.72%), Query Frame = 1
Query:    1 THAAKICKVMDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQISVIMGPCAGGAVYSPAMTDFTFMVE-GSYQFVTGPSVVKTVTNEDITSEELGGAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPAERDCEGLHGFIPTDPNVPYDMQLVIREIVDE 570
            THAAKICK+MDKA+ VGAPVIGLNDSGGARIQEG+DSLAGYAEVFQRNV ASGV+PQIS+IMGPCAGGAVYSPAMTDF FMVE  SY FVTGP VVKTVT+E +T+EELGGA THT KSGVA  AF NDV ALLQ+R   D+LP SN+E PPV P+ DP +R    L   IP +PN PYDM+ ++ ++VDE
Sbjct:  103 THAAKICKIMDKAMAVGAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVMASGVIPQISMIMGPCAGGAVYSPAMTDFIFMVEDSSYMFVTGPDVVKTVTHEQVTAEELGGAITHTSKSGVADLAFENDVHALLQLRRFIDFLPASNKEKPPVRPTNDPWDRLDYSLDSLIPNNPNKPYDMKELLEKVVDE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114343.2995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B9DH78_9PROT2.380e-9174.87Methylmalonyl-CoA carboxyltransferase n=1 Tax=Alph... [more]
A0A812Z5R2_SYMMI4.750e-9171.73PccB protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3LK18_9STRA2.920e-9075.39Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
G5ZX79_9PROT6.040e-8972.77Acetyl-CoA carboxylase, carboxyltransferase compon... [more]
A0A5A8EFN3_CAFRO2.510e-8873.30Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S0SX47_9STRA5.220e-8871.05Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A369TBX6_9PROT2.710e-8773.30Acyl-CoA carboxylase subunit beta n=1 Tax=Ferrugin... [more]
A0A7S4BL14_CHRCT4.980e-8771.73Hypothetical protein (Fragment) n=3 Tax=Chrysotila... [more]
A0A0F2RAK7_9PROT7.650e-8773.30Methylmalonyl-CoA carboxyltransferase n=4 Tax=Rhod... [more]
H6SN44_PARPM7.650e-8772.77Carboxyl transferase n=2 Tax=Pararhodospirillum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114343contigM-pyrifera_M_contig114343:2..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score262.3
Seed ortholog evalue1.7e-67
Seed eggNOG ortholog909943.HIMB100_00006250
Preferred namepccB
KEGG rclassRC00097,RC00609
KEGG koko:K01966
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00373,M00741
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016421,GO:0016874,GO:0016885,GO:0019752,GO:0031974,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0070013,GO:0071704,GO:0072329,GO:1901575
EggNOG free text desc.Carboxyl transferase domain
EggNOG OGs1MVAX@1224,2TRI1@28211,4BPMW@82117,COG4799@1,COG4799@2
EC2.1.3.15,6.4.1.3
COG Functional cat.I
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size570
Cds size543
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.0447855-CDS-M-pyrifera_M_contig114343:1..5441622815660.0447855-CDS-M-pyrifera_M_contig114343:1..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114343 2..544 -
1692277509.406267-CDS-M-pyrifera_M_contig114343:1..5441692277509.406267-CDS-M-pyrifera_M_contig114343:1..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114343 2..544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.0580366-UTR-M-pyrifera_M_contig114343:544..5711622815660.0580366-UTR-M-pyrifera_M_contig114343:544..571Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114343 545..571 -
1692277509.4185982-UTR-M-pyrifera_M_contig114343:544..5711692277509.4185982-UTR-M-pyrifera_M_contig114343:544..571Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114343 545..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114343.2995.1prot_M-pyrifera_M_contig114343.2995.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114343 2..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114343.2995.1

>prot_M-pyrifera_M_contig114343.2995.1 ID=prot_M-pyrifera_M_contig114343.2995.1|Name=mRNA_M-pyrifera_M_contig114343.2995.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
MDKALLVGAPVIGLNDSGGARIQEGIDSLAGYAEVFQRNVDASGVVPQIS
VIMGPCAGGAVYSPAMTDFTFMVEGSYQFVTGPSVVKTVTNEDITSEELG
GAKTHTVKSGVAHGAFANDVEALLQMRELFDYLPLSNREAPPVLPSADPA
ERDCEGLHGFIPTDPNVPYDMQLVIREIVDE
back to top

mRNA from alignment at M-pyrifera_M_contig114343:2..571-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114343.2995.1 ID=mRNA_M-pyrifera_M_contig114343.2995.1|Name=mRNA_M-pyrifera_M_contig114343.2995.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig114343:2..571- (Macrocystis pyrifera P11B4 male)
ACGCATGCGGCCAAGATCTGCAAGGTGATGGACAAGGCGTTGCTGGTGGG CGCTCCCGTGATTGGCTTGAACGACAGCGGCGGGGCGCGTATCCAGGAGG GCATCGACAGCCTCGCCGGGTATGCAGAGGTGTTCCAGCGCAACGTGGAT GCGAGTGGGGTGGTGCCCCAGATTTCGGTGATCATGGGCCCGTGTGCAGG GGGAGCAGTGTACTCTCCCGCGATGACCGACTTCACCTTTATGGTGGAGG GCTCGTACCAGTTCGTGACGGGGCCGAGTGTGGTGAAGACGGTCACGAAC GAGGACATCACCAGCGAGGAGTTGGGGGGAGCCAAGACCCACACTGTCAA GAGCGGTGTGGCGCATGGTGCCTTCGCCAACGACGTGGAGGCGTTGTTGC AAATGCGAGAACTCTTCGACTACCTCCCACTGAGCAACCGAGAAGCGCCG CCAGTGCTCCCTTCCGCCGACCCAGCAGAGAGGGACTGTGAAGGGCTGCA CGGGTTCATTCCCACCGACCCAAACGTGCCCTACGACATGCAGCTGGTGA TTCGCGAAATCGTGGACGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114343:2..571-

>mRNA_M-pyrifera_M_contig114343.2995.1 ID=mRNA_M-pyrifera_M_contig114343.2995.1|Name=mRNA_M-pyrifera_M_contig114343.2995.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig114343:2..571- (Macrocystis pyrifera P11B4 male)
ATGGACAAGGCGTTGCTGGTGGGCGCTCCCGTGATTGGCTTGAACGACAG
CGGCGGGGCGCGTATCCAGGAGGGCATCGACAGCCTCGCCGGGTATGCAG
AGGTGTTCCAGCGCAACGTGGATGCGAGTGGGGTGGTGCCCCAGATTTCG
GTGATCATGGGCCCGTGTGCAGGGGGAGCAGTGTACTCTCCCGCGATGAC
CGACTTCACCTTTATGGTGGAGGGCTCGTACCAGTTCGTGACGGGGCCGA
GTGTGGTGAAGACGGTCACGAACGAGGACATCACCAGCGAGGAGTTGGGG
GGAGCCAAGACCCACACTGTCAAGAGCGGTGTGGCGCATGGTGCCTTCGC
CAACGACGTGGAGGCGTTGTTGCAAATGCGAGAACTCTTCGACTACCTCC
CACTGAGCAACCGAGAAGCGCCGCCAGTGCTCCCTTCCGCCGACCCAGCA
GAGAGGGACTGTGAAGGGCTGCACGGGTTCATTCCCACCGACCCAAACGT
GCCCTACGACATGCAGCTGGTGATTCGCGAAATCGTGGACGAAATGGACA
AGGCGTTGCTGGTGGGCGCTCCCGTGATTGGCTTGAACGACAGCGGCGGG
GCGCGTATCCAGGAGGGCATCGACAGCCTCGCCGGGTATGCAGAGGTGTT
CCAGCGCAACGTGGATGCGAGTGGGGTGGTGCCCCAGATTTCGGTGATCA
TGGGCCCGTGTGCAGGGGGAGCAGTGTACTCTCCCGCGATGACCGACTTC
ACCTTTATGGTGGAGGGCTCGTACCAGTTCGTGACGGGGCCGAGTGTGGT
GAAGACGGTCACGAACGAGGACATCACCAGCGAGGAGTTGGGGGGAGCCA
AGACCCACACTGTCAAGAGCGGTGTGGCGCATGGTGCCTTCGCCAACGAC
GTGGAGGCGTTGTTGCAAATGCGAGAACTCTTCGACTACCTCCCACTGAG
CAACCGAGAAGCGCCGCCAGTGCTCCCTTCCGCCGACCCAGCAGAGAGGG
ACTGTGAAGGGCTGCACGGGTTCATTCCCACCGACCCAAACGTGCCCTAC
GACATGCAGCTGGTGATTCGCGAAATCGTGGACGAA
back to top