mRNA_M-pyrifera_M_contig114314.2986.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114314.2986.1
Unique NamemRNA_M-pyrifera_M_contig114314.2986.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A6J3LVM6_9PEZI (BRCT domain-containing protein n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3LVM6_9PEZI)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-11
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  103 WIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVC--KEPTGHKSMFARKWSVPAV 381
            WIE  I  K  LDPS  V+ RPLPR   L   S   +C+TGF GV+ RQ+   + ++GF Y ++L P T +L+    E    K+ +A K  +P V
Sbjct:  392 WIERSIQGKRALDPSEDVLSRPLPR---LSDCSGTTICITGFTGVDYRQIAQALTIIGFSYQDKLLPSTSLLISGSTEMRKEKAYYAAKHQIPVV 483          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A388LN47_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LN47_CHABU)

HSP 1 Score: 59.3 bits (142), Expect = 1.220e-7
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 1
Query:   91 VSPNWIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGHKSMFARKWSVPAVPL 387
            V+ +W++SC++ KS+ DP S V+ RPL   VPL        C++ +   ER+  K +V  +G ++ E L  +T  L+C+   G K   A   +   V L
Sbjct:  620 VTRHWVQSCLMHKSLRDPDSHVLYRPLRCSVPLPEFENRFFCISQYDDDERQYAKCMVKALGGKFSEILKNKTTHLLCRVAGGEKYRVALTLNATIVTL 718          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A401H207_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H207_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 7.770e-7
Identity = 29/95 (30.53%), Postives = 45/95 (47.37%), Query Frame = 1
Query:  103 WIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGHKSMFARKWSVPAVPL 387
            W+E CI ++ + +P+  V   PL  R P+ GA  + L  +G    E   ++ L   +G       S  +  L+C   TG K   AR+W VP V +
Sbjct:  536 WLERCIFQERVCEPTEHVSFSPLKIRTPIDGAENINLSFSGLDQSEACWVRRLARALGVNIALNFSRRSTHLLCPSRTGAKVEKAREWGVPIVDM 630          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A7S0KMH4_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KMH4_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.970e-6
Identity = 35/99 (35.35%), Postives = 52/99 (52.53%), Query Frame = 1
Query:   88 VVSPNWIESCILEKSILDPSSAVVLRPLPRRVP-LKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGHKSMFARKWSVPAV 381
            VVS  WI +C+  K++LD  S V+  P PR V  L+      +C+TG+ G  RR ++T+V V+G  Y +        LV  E +G K   AR W+   +
Sbjct:  106 VVSAEWIRACLSAKTLLDVDSNVLYVP-PRSVAGLEAFKDCVVCVTGYNGQRRRDVETMVKVLGGTYQKVFDRGVTHLVAFEFSGAKWERARGWTTAKI 203          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A4S4MQ68_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MQ68_9APHY)

HSP 1 Score: 54.7 bits (130), Expect = 4.950e-6
Identity = 28/95 (29.47%), Postives = 45/95 (47.37%), Query Frame = 1
Query:  103 WIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGHKSMFARKWSVPAVPL 387
            W+E C+ E+ I +PS  +   PL  + P+ GA  + L  +G    E   ++ L   +G       S  T  L+C   TG K   AR+W++  V +
Sbjct:  568 WLERCMYEERICEPSEHIAFVPLGIQTPIAGAEEISLSCSGLDQSEGFWIRRLARALGITLAVTFSRRTTHLLCPSMTGAKFEKAREWNIAVVDM 662          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A196S9I9_BLAHN (Subunit of DNA polymerase 2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S9I9_BLAHN)

HSP 1 Score: 52.4 bits (124), Expect = 3.090e-5
Identity = 30/99 (30.30%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   91 VSPNWIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGH--KSMFARKWSVPAV 381
            VS  W++ C+  K ++  +S+++ RP PR +         +CLTGF   ++ ++++LVI +G +    ++P T  L+C+E   +  K   ARK  V  V
Sbjct:  396 VSARWLKMCLEMKKLVPRNSSLLYRPFPRLL-----KDCVVCLTGFGYDDKVKMESLVIALGGKLENSVTPSTYALICQEHVKYNVKIAAARKLGVLVV 489          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: A0A0H2SNB8_9AGAM (Uncharacterized protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2SNB8_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 5.840e-5
Identity = 32/118 (27.12%), Postives = 55/118 (46.61%), Query Frame = 1
Query:   37 YDRVRKRIGTQYGPARPVVSPNWIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGHKSMFARKWSVPAVPLQ 390
            +D +R R  T+           W+E CI E+ I +P+  V   PL    PL GA+ L++ ++G+    +     L+  +G    EQL+ ++  L+       K   A++W +P V  Q
Sbjct:  491 FDSLRSRFRTEC----------WLEQCIFEERICEPTEHVAFVPLDVETPLPGATNLRVHISGYPAHSKTFTVRLLKTIGAPVAEQLNRKSTHLLTCSTISAKYAKAQEWGLPCVGTQ 598          
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Match: UPI001C7BF0AE (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7BF0AE)

HSP 1 Score: 51.6 bits (122), Expect = 5.890e-5
Identity = 26/95 (27.37%), Postives = 43/95 (45.26%), Query Frame = 1
Query:  103 WIESCILEKSILDPSSAVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLSPETKVLVCKEPTGHKSMFARKWSVPAVPL 387
            W+ESCI ++ + +PS  V   P+    P+  A  + +  +G    E+  +  LV  +G       S  T  L C    G K   A++W +P V +
Sbjct:  521 WLESCIFQERVCEPSQHVSFTPVGIPCPIDAAEKVFISFSGLDESEKYFMSRLVKALGLNLLPAFSKRTTHLFCPSAQGLKYEKAKEWGIPVVSM 615          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114314.2986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6J3LVM6_9PEZI1.410e-1140.00BRCT domain-containing protein n=1 Tax=Dissoconium... [more]
A0A388LN47_CHABU1.220e-732.32Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A401H207_9APHY7.770e-730.53Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A7S0KMH4_9CHLO1.970e-635.35Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A4S4MQ68_9APHY4.950e-629.47Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
A0A196S9I9_BLAHN3.090e-530.30Subunit of DNA polymerase 2 n=1 Tax=Blastocystis s... [more]
A0A0H2SNB8_9AGAM5.840e-527.12Uncharacterized protein n=1 Tax=Schizopora paradox... [more]
UPI001C7BF0AE5.890e-527.37uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114314contigM-pyrifera_M_contig114314:169..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.7
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog3827.XP_004498430.1
KEGG koko:K10728
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010556,GO:0010562,GO:0010604,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0022402,GO:0022607,GO:0030174,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031570,GO:0032268,GO:0032270,GO:0033036,GO:0033135,GO:0033138,GO:0033260,GO:0033365,GO:0033554,GO:0033674,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0035561,GO:0035563,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044786,GO:0045786,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070727,GO:0071163,GO:0071165,GO:0071168,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:1901360,GO:1901576,GO:2000112
EggNOG free text desc.DNA topoisomerase 2-binding protein
EggNOG OGs37PPH@33090,3GAQB@35493,4JI7G@91835,KOG1929@1,KOG1929@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko03400
Exons1
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.6782818-CDS-M-pyrifera_M_contig114314:168..5611622815659.6782818-CDS-M-pyrifera_M_contig114314:168..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114314 169..561 -
1692277509.2591162-CDS-M-pyrifera_M_contig114314:168..5611692277509.2591162-CDS-M-pyrifera_M_contig114314:168..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114314 169..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114314.2986.1prot_M-pyrifera_M_contig114314.2986.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114314 169..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114314.2986.1

>prot_M-pyrifera_M_contig114314.2986.1 ID=prot_M-pyrifera_M_contig114314.2986.1|Name=mRNA_M-pyrifera_M_contig114314.2986.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
YVQYVIAPHGAKYDRVRKRIGTQYGPARPVVSPNWIESCILEKSILDPSS
AVVLRPLPRRVPLKGASALQLCLTGFKGVERRQLKTLVIVMGFRYHEQLS
PETKVLVCKEPTGHKSMFARKWSVPAVPLQ*
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mRNA from alignment at M-pyrifera_M_contig114314:169..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114314.2986.1 ID=mRNA_M-pyrifera_M_contig114314.2986.1|Name=mRNA_M-pyrifera_M_contig114314.2986.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig114314:169..561- (Macrocystis pyrifera P11B4 male)
TATGTACAGTACGTCATTGCTCCACATGGTGCAAAGTATGACAGGGTGAG AAAGAGAATAGGAACCCAGTACGGTCCTGCTCGGCCAGTGGTGTCACCGA ATTGGATCGAGAGCTGCATCCTCGAGAAGAGTATACTTGACCCCTCTTCT GCAGTTGTGCTGAGACCGCTACCAAGGAGAGTGCCTCTCAAGGGGGCAAG TGCGCTTCAGCTCTGCCTGACTGGTTTCAAGGGTGTGGAGAGGCGGCAGC TCAAGACGCTTGTCATTGTGATGGGATTCCGGTATCACGAGCAGTTGTCG CCAGAGACAAAGGTGCTGGTATGCAAGGAACCCACTGGGCACAAGTCCAT GTTTGCTCGCAAGTGGTCTGTGCCTGCAGTGCCTCTCCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114314:169..561-

>mRNA_M-pyrifera_M_contig114314.2986.1 ID=mRNA_M-pyrifera_M_contig114314.2986.1|Name=mRNA_M-pyrifera_M_contig114314.2986.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig114314:169..561- (Macrocystis pyrifera P11B4 male)
TATGTACAGTACGTCATTGCTCCACATGGTGCAAAGTATGACAGGGTGAG
AAAGAGAATAGGAACCCAGTACGGTCCTGCTCGGCCAGTGGTGTCACCGA
ATTGGATCGAGAGCTGCATCCTCGAGAAGAGTATACTTGACCCCTCTTCT
GCAGTTGTGCTGAGACCGCTACCAAGGAGAGTGCCTCTCAAGGGGGCAAG
TGCGCTTCAGCTCTGCCTGACTGGTTTCAAGGGTGTGGAGAGGCGGCAGC
TCAAGACGCTTGTCATTGTGATGGGATTCCGGTATCACGAGCAGTTGTCG
CCAGAGACAAAGGTGCTGGTATGCAAGGAACCCACTGGGCACAAGTCCAT
GTTTGCTCGCAAGTGGTCTGTGCCTGCAGTGCCTCTCCAATGATATGTAC
AGTACGTCATTGCTCCACATGGTGCAAAGTATGACAGGGTGAGAAAGAGA
ATAGGAACCCAGTACGGTCCTGCTCGGCCAGTGGTGTCACCGAATTGGAT
CGAGAGCTGCATCCTCGAGAAGAGTATACTTGACCCCTCTTCTGCAGTTG
TGCTGAGACCGCTACCAAGGAGAGTGCCTCTCAAGGGGGCAAGTGCGCTT
CAGCTCTGCCTGACTGGTTTCAAGGGTGTGGAGAGGCGGCAGCTCAAGAC
GCTTGTCATTGTGATGGGATTCCGGTATCACGAGCAGTTGTCGCCAGAGA
CAAAGGTGCTGGTATGCAAGGAACCCACTGGGCACAAGTCCATGTTTGCT
CGCAAGTGGTCTGTGCCTGCAGTGCCTCTCCAATGA
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