mRNA_M-pyrifera_M_contig114310.2984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114310.2984.1
Unique NamemRNA_M-pyrifera_M_contig114310.2984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: UPI0012633551 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI0012633551)

HSP 1 Score: 75.5 bits (184), Expect = 3.670e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    7 MADESGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            MA  S +  TR+ K ICVFCGS+AG   S++ AA ELGK +VE  I LVYGGG+VGLMG+I
Sbjct:    1 MASSSSNEKTRKFKRICVFCGSRAGYKSSFSEAALELGKELVERNIDLVYGGGSVGLMGLI 61          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A067L8A3_JATCU (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L8A3_JATCU)

HSP 1 Score: 73.9 bits (180), Expect = 1.420e-14
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   13 DESGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            D S S  TR  K+ICVFCGS+AG   S++ AA ELGK +VE  I LVYGGG+VGLMG+I
Sbjct:    6 DTSASEKTRRFKSICVFCGSRAGYKSSFSDAALELGKQLVERKIDLVYGGGSVGLMGLI 64          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A250XFK0_9CHLO (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XFK0_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.990e-14
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:   40 ELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            E+K ICVFCGS +G    Y A AA LG+HMV+ GIGLVYGGGTVGLMG+I
Sbjct:   43 EVKRICVFCGSASGIKPEYEAVAAALGEHMVQQGIGLVYGGGTVGLMGVI 92          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A1G6ST50_9GAMM (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=2 Tax=Xanthomonadales TaxID=135614 RepID=A0A1G6ST50_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 9.800e-14
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   43 LKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            +K +CV+CGS AGND  YAAAA  LGK +   G+GLVYGGG VGLMGI+
Sbjct:    1 MKTLCVYCGSNAGNDPRYAAAAVSLGKRIAAEGMGLVYGGGNVGLMGIV 49          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: UPI00068B400E (TIGR00730 family Rossman fold protein n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00068B400E)

HSP 1 Score: 71.2 bits (173), Expect = 1.070e-13
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   28 VATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMG 183
            ++TR  K++CV+CGS  GND +YA AA +LG+ + E+GIGLVYGGG++GLMG
Sbjct:    1 MSTRPKKSLCVYCGSSPGNDPAYAEAARKLGRQLAEAGIGLVYGGGSLGLMG 52          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A453MKN2_AEGTS (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MKN2_AEGTS)

HSP 1 Score: 70.1 bits (170), Expect = 1.690e-13
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 ADESGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            ++ SG  A+R  + +CVFCGS AG   +Y AAA +LG+ +VE GI LVYGGG+VGLMG++
Sbjct:   25 SNNSGKKASR-FRRVCVFCGSSAGRKAAYQAAAVQLGQQLVERGIDLVYGGGSVGLMGLV 83          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A835XZR7_9CHLO (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XZR7_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 1.730e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   37 RELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            REL+ +CVFCG+  GND +Y AAA +LG+++V   IGLVYGGGTVGLMG I
Sbjct:   10 RELRKLCVFCGASPGNDPAYMAAAKQLGEYLVSERIGLVYGGGTVGLMGEI 60          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A150GXP2_GONPE (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GXP2_GONPE)

HSP 1 Score: 70.9 bits (172), Expect = 2.450e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 MADESGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            M+  +    +R+L  ICVFCG+  G+D  Y AAA  LG+H+V+  IGLVYGGGTVGLMG I
Sbjct:    1 MSTSTDGADSRQLLKICVFCGASTGSDPRYMAAAKALGEHLVQQKIGLVYGGGTVGLMGEI 61          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A804II89_MUSAM (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804II89_MUSAM)

HSP 1 Score: 70.1 bits (170), Expect = 2.720e-13
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   19 SGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            SGS +    ++ICVFCGS++GN  S++ AA +LGK +VE  I LVYGGG+VGLMG+I
Sbjct:   11 SGSGSKARFRSICVFCGSRSGNRPSFSEAALDLGKQLVERNINLVYGGGSVGLMGLI 67          
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Match: A0A371E2L9_MUCPR (Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371E2L9_MUCPR)

HSP 1 Score: 67.4 bits (163), Expect = 3.740e-13
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 KRMADESGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVYGGGTVGLMGII 189
            + M  E   +     K ICVFCGS  GN  SY  AA ELGK +V   I LVYGGG++GLMG++
Sbjct:   11 EEMEGEETEMKQSRFKRICVFCGSSPGNKSSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLV 73          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114310.2984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00126335513.670e-1560.66cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A067L8A3_JATCU1.420e-1462.71Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A250XFK0_9CHLO1.990e-1470.00Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A1G6ST50_9GAMM9.800e-1465.31Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
UPI00068B400E1.070e-1359.62TIGR00730 family Rossman fold protein n=1 Tax=Ther... [more]
A0A453MKN2_AEGTS1.690e-1355.00Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A835XZR7_9CHLO1.730e-1364.71Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A150GXP2_GONPE2.450e-1355.74Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A804II89_MUSAM2.720e-1357.89Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A371E2L9_MUCPR3.740e-1350.79Putative cytokinin riboside 5'-monophosphate phosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114310contigM-pyrifera_M_contig114310:1..189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.3
Seed ortholog evalue7e-10
Seed eggNOG ortholog15368.BRADI2G42190.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009690,GO:0009691,GO:0009987,GO:0010817,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048509,GO:0050789,GO:0050793,GO:0065007,GO:0065008,GO:0071704,GO:1901564
EggNOG free text desc.Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms
EggNOG OGs2QSR9@2759,37IB4@33090,3GN7W@35493,3IAE8@38820,3KNK6@4447,COG1611@1
COG Functional cat.G
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.5524595-CDS-M-pyrifera_M_contig114310:0..1831622815659.5524595-CDS-M-pyrifera_M_contig114310:0..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114310 1..183 -
1692277509.2067387-CDS-M-pyrifera_M_contig114310:0..1831692277509.2067387-CDS-M-pyrifera_M_contig114310:0..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114310 1..183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.5645785-UTR-M-pyrifera_M_contig114310:183..1891622815659.5645785-UTR-M-pyrifera_M_contig114310:183..189Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114310 184..189 -
1692277509.2189422-UTR-M-pyrifera_M_contig114310:183..1891692277509.2189422-UTR-M-pyrifera_M_contig114310:183..189Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114310 184..189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114310.2984.1prot_M-pyrifera_M_contig114310.2984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114310 1..183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114310.2984.1

>prot_M-pyrifera_M_contig114310.2984.1 ID=prot_M-pyrifera_M_contig114310.2984.1|Name=mRNA_M-pyrifera_M_contig114310.2984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MADESGSVATRELKNICVFCGSQAGNDGSYAAAAAELGKHMVESGIGLVY
GGGTVGLMGII
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mRNA from alignment at M-pyrifera_M_contig114310:1..189-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114310.2984.1 ID=mRNA_M-pyrifera_M_contig114310.2984.1|Name=mRNA_M-pyrifera_M_contig114310.2984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig114310:1..189- (Macrocystis pyrifera P11B4 male)
AAGAGGATGGCAGACGAGAGTGGTAGTGTCGCTACGCGTGAGCTGAAGAA CATCTGTGTCTTCTGCGGTTCGCAGGCAGGGAACGACGGTTCTTATGCTG CGGCTGCAGCCGAGCTGGGAAAGCACATGGTGGAGAGTGGCATTGGCCTT GTATACGGCGGTGGCACTGTCGGCCTCATGGGCATCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114310:1..189-

>mRNA_M-pyrifera_M_contig114310.2984.1 ID=mRNA_M-pyrifera_M_contig114310.2984.1|Name=mRNA_M-pyrifera_M_contig114310.2984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig114310:1..189- (Macrocystis pyrifera P11B4 male)
ATGGCAGACGAGAGTGGTAGTGTCGCTACGCGTGAGCTGAAGAACATCTG
TGTCTTCTGCGGTTCGCAGGCAGGGAACGACGGTTCTTATGCTGCGGCTG
CAGCCGAGCTGGGAAAGCACATGGTGGAGAGTGGCATTGGCCTTGTATAC
GGCGGTGGCACTGTCGGCCTCATGGGCATCATTATGGCAGACGAGAGTGG
TAGTGTCGCTACGCGTGAGCTGAAGAACATCTGTGTCTTCTGCGGTTCGC
AGGCAGGGAACGACGGTTCTTATGCTGCGGCTGCAGCCGAGCTGGGAAAG
CACATGGTGGAGAGTGGCATTGGCCTTGTATACGGCGGTGGCACTGTCGG
CCTCATGGGCATCATT
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