prot_M-pyrifera_M_contig11431.2983.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig11431.2983.1
Unique Name	prot_M-pyrifera_M_contig11431.2983.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	334

Homology

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BLAST of mRNA_M-pyrifera_M_contig11431.2983.1 vs. uniprot
Match: D7FIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT6_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.600e-44
Identity = 133/351 (37.89%), Postives = 186/351 (52.99%), Query Frame = 0

Query:    1 LGWRGGVFSTSTLAFGGVFIIRAGRWALLLFDPFLLEAVAV-----LSPPGTFERVSLAGGGEEGE---GLVATERFLAVLLV-----SAACYTLAGFAFVRRLLGHRLIRTPLGVLAEILRAEYVCVAAEVTLGLIAPLTLAATSSTVSTAGRETESETAASAAVHSALLLVLPDLLTVLACAFAGAAISXXXXXXXXXXXX--GGEGQCKRAVSYSSHLATWQTWAGEREIAQREFVESREGGTRGRAGKAKDEGALLRSRLPWFVPSGALGAAFYAVTAGGVFEEVRREHLLEGYWFLRPEHTRTTLSAVFSAVFLLRSLS--GGRDSDDESGVAFNPLRPWFRFFGF 334
            L W  GV  T   A+GG+ I+R GRWALLL   +     A+     L+P G++      GGG EG+    +  ++  LAV L      +A CYTL G + VR+LL HRL+R PLG+ AE+LRA  V  ++E+ L L++    + +S +++   +E   ETA++    +  L ++   L  LACAFAGAA+S       XXXXX  G  G+ +R  S +++ A   T  G R         +   G     G+ + E   + +   W VPSGALG  FYA+T+GGVF  V RE+LL   WF  P+  R  L+ VF+AV+LLRSL   GG          FNPL P +   GF
Sbjct:   90 LHWLKGVVWTWAYAYGGLIIVRVGRWALLLLLAWSSSTRALGETGKLTPEGSYWPWGRGGGGGEGDRWAAVTTSDDSLAVTLAVALGAAAVCYTLTGASSVRQLLWHRLLRVPLGLAAELLRASCVAASSEIALALVS-WGFSVSSPSLAFPYKEGREETASAEGTRAFALTLVLGFLGALACAFAGAAVSCVGGSVGXXXXXEEGRRGRLERTASSATNAAEPPTGGGSRSRTGTSSAVNVAAGREAGPGRREGESQRVTAAAAWLVPSGALGGVFYALTSGGVFRGVMREYLLGAEWFSSPDSVRMALAMVFAAVYLLRSLPPVGG----------FNPLSPCYALLGF 429

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig11431.2983.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig11431.2983.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FIT6_ECTSI	1.600e-44	37.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 69..88
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 291..308
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 249..271
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 309..334
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 272..290
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..68
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 89..248
None	No IPR available	TMHMM	TMhelix		coord: 155..177
None	No IPR available	TMHMM	TMhelix		coord: 69..88
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 249..271

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig11431	contig	M-pyrifera_M_contig11431:3624..7453 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig11431.2983.1	mRNA_M-pyrifera_M_contig11431.2983.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig11431 3624..7453 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig11431.2983.1 ID=prot_M-pyrifera_M_contig11431.2983.1|Name=mRNA_M-pyrifera_M_contig11431.2983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=334bp
LGWRGGVFSTSTLAFGGVFIIRAGRWALLLFDPFLLEAVAVLSPPGTFER
VSLAGGGEEGEGLVATERFLAVLLVSAACYTLAGFAFVRRLLGHRLIRTP
LGVLAEILRAEYVCVAAEVTLGLIAPLTLAATSSTVSTAGRETESETAAS
AAVHSALLLVLPDLLTVLACAFAGAAISSVGGGGGGGGEEGGEGQCKRAV
SYSSHLATWQTWAGEREIAQREFVESREGGTRGRAGKAKDEGALLRSRLP
WFVPSGALGAAFYAVTAGGVFEEVRREHLLEGYWFLRPEHTRTTLSAVFS
AVFLLRSLSGGRDSDDESGVAFNPLRPWFRFFGF