mRNA_M-pyrifera_M_contig11431.2983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11431.2983.1
Unique NamemRNA_M-pyrifera_M_contig11431.2983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11431.2983.1 vs. uniprot
Match: D7FIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT6_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.600e-44
Identity = 133/351 (37.89%), Postives = 186/351 (52.99%), Query Frame = 1 
Query:    1 LGWRGGVFSTSTLAFGGVFIIRAGRWALLLFDPFLLEAVAV-----LSPPGTFERVSLAGGGEEGE---GLVATERFLAVLLV-----SAACYTLAGFAFVRRLLGHRLIRTPLGVLAEILRAEYVCVAAEVTLGLIAPLTLAATSSTVSTAGRETESETAASAAVHSALLLVLPDLLTVLACAFAGAAISXXXXXXXXXXXX--GGEGQCKRAVSYSSHLATWQTWAGEREIAQREFVESREGGTRGRAGKAKDEGALLRSRLPWFVPSGALGAAFYAVTAGGVFEEVRREHLLEGYWFLRPEHTRTTLSAVFSAVFLLRSLS--GGRDSDDESGVAFNPLRPWFRFFGF 1002
            L W  GV  T   A+GG+ I+R GRWALLL   +     A+     L+P G++      GGG EG+    +  ++  LAV L      +A CYTL G + VR+LL HRL+R PLG+ AE+LRA  V  ++E+ L L++    + +S +++   +E   ETA++    +  L ++   L  LACAFAGAA+S       XXXXX  G  G+ +R  S +++ A   T  G R         +   G     G+ + E   + +   W VPSGALG  FYA+T+GGVF  V RE+LL   WF  P+  R  L+ VF+AV+LLRSL   GG          FNPL P +   GF
Sbjct:   90 LHWLKGVVWTWAYAYGGLIIVRVGRWALLLLLAWSSSTRALGETGKLTPEGSYWPWGRGGGGGEGDRWAAVTTSDDSLAVTLAVALGAAAVCYTLTGASSVRQLLWHRLLRVPLGLAAELLRASCVAASSEIALALVS-WGFSVSSPSLAFPYKEGREETASAEGTRAFALTLVLGFLGALACAFAGAAVSCVGGSVGXXXXXEEGRRGRLERTASSATNAAEPPTGGGSRSRTGTSSAVNVAAGREAGPGRREGESQRVTAAAAWLVPSGALGGVFYALTSGGVFRGVMREYLLGAEWFSSPDSVRMALAMVFAAVYLLRSLPPVGG----------FNPLSPCYALLGF 429
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11431.2983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIT6_ECTSI1.600e-4437.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11431contigM-pyrifera_M_contig11431:3624..7453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002970.1
Exons6
Model size1002
Cds size1002
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11431.2983.1prot_M-pyrifera_M_contig11431.2983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11431 3624..7453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.4181716-CDS-M-pyrifera_M_contig11431:3623..37841622815659.4181716-CDS-M-pyrifera_M_contig11431:3623..3784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 3624..3784 -
1692277509.1390176-CDS-M-pyrifera_M_contig11431:3623..37841692277509.1390176-CDS-M-pyrifera_M_contig11431:3623..3784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 3624..3784 -
1622815659.4284415-CDS-M-pyrifera_M_contig11431:4701..48841622815659.4284415-CDS-M-pyrifera_M_contig11431:4701..4884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 4702..4884 -
1692277509.1486015-CDS-M-pyrifera_M_contig11431:4701..48841692277509.1486015-CDS-M-pyrifera_M_contig11431:4701..4884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 4702..4884 -
1622815659.4386103-CDS-M-pyrifera_M_contig11431:5325..53981622815659.4386103-CDS-M-pyrifera_M_contig11431:5325..5398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 5326..5398 -
1692277509.1583211-CDS-M-pyrifera_M_contig11431:5325..53981692277509.1583211-CDS-M-pyrifera_M_contig11431:5325..5398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 5326..5398 -
1622815659.4892716-CDS-M-pyrifera_M_contig11431:6305..64771622815659.4892716-CDS-M-pyrifera_M_contig11431:6305..6477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 6306..6477 -
1692277509.1696062-CDS-M-pyrifera_M_contig11431:6305..64771692277509.1696062-CDS-M-pyrifera_M_contig11431:6305..6477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 6306..6477 -
1622815659.502939-CDS-M-pyrifera_M_contig11431:6594..67191622815659.502939-CDS-M-pyrifera_M_contig11431:6594..6719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 6595..6719 -
1692277509.1854818-CDS-M-pyrifera_M_contig11431:6594..67191692277509.1854818-CDS-M-pyrifera_M_contig11431:6594..6719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 6595..6719 -
1622815659.5214155-CDS-M-pyrifera_M_contig11431:7165..74531622815659.5214155-CDS-M-pyrifera_M_contig11431:7165..7453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 7166..7453 -
1692277509.1962783-CDS-M-pyrifera_M_contig11431:7165..74531692277509.1962783-CDS-M-pyrifera_M_contig11431:7165..7453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11431 7166..7453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11431.2983.1

>prot_M-pyrifera_M_contig11431.2983.1 ID=prot_M-pyrifera_M_contig11431.2983.1|Name=mRNA_M-pyrifera_M_contig11431.2983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=334bp
LGWRGGVFSTSTLAFGGVFIIRAGRWALLLFDPFLLEAVAVLSPPGTFER
VSLAGGGEEGEGLVATERFLAVLLVSAACYTLAGFAFVRRLLGHRLIRTP
LGVLAEILRAEYVCVAAEVTLGLIAPLTLAATSSTVSTAGRETESETAAS
AAVHSALLLVLPDLLTVLACAFAGAAISSVGGGGGGGGEEGGEGQCKRAV
SYSSHLATWQTWAGEREIAQREFVESREGGTRGRAGKAKDEGALLRSRLP
WFVPSGALGAAFYAVTAGGVFEEVRREHLLEGYWFLRPEHTRTTLSAVFS
AVFLLRSLSGGRDSDDESGVAFNPLRPWFRFFGF
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mRNA from alignment at M-pyrifera_M_contig11431:3624..7453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11431.2983.1 ID=mRNA_M-pyrifera_M_contig11431.2983.1|Name=mRNA_M-pyrifera_M_contig11431.2983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3830bp|location=Sequence derived from alignment at M-pyrifera_M_contig11431:3624..7453- (Macrocystis pyrifera P11B4 male)
CTGGGTTGGCGAGGAGGCGTATTTTCGACGTCGACACTAGCGTTCGGAGG
CGTGTTCATCATTCGCGCCGGCCGGTGGGCGTTGTTGCTATTTGACCCCT
TTCTTCTTGAAGCTGTTGCGGTGCTCTCGCCCCCAGGGACGTTTGAGAGG
GTTTCTCTCGCAGGCGGAGGGGAGGAGGGGGAAGGGTTGGTGGCGACCGA
GAGGTTCCTGGCGGTCTTGCTCGTGTCGGCCGCCTGCTACACCTTGGCAG
GATTTGCGTTCGTTCGGCGCCTCTTGGGGCATCGATTGGTGAGCACTCTC
TCATTTTGTTTTTCTAGTTTGTTCGTTTTCTTTTACCCCTTTTCAGCCGC
AACCACTAAGTACTCAGGTTTTTTTCTCCTTGCAGCTCGGTTTACTCTGT
GCGAAAGGACTGGGCTCCTTTACCCGTTGTTTGCTGCAGAGGTATAGCAG
CGTTTGCCTCCCACGCCCATGTTGCTGTCGTCACCTCCGAGAGGGCTTCG
ACGGATCAACTCCGACAGGCACTCAGCCCAATTTTGAAAGCGGGGTCGAA
GTTTTGACTCCTGTTCTAAAATGCGAAGAAATTACGACTCATATTGCCCA
TTTATCTCTCTCGCTCTCCCCCCCCCCCTCTCCCTCCTTCCTTCCCTCCC
TCCGCCCCCCCCGCCTCCTGCGCTCTCTCCTTCCCTCCCTGCCATTCTCC
CTCCGTCCGTCCATCCCTCTAACCCGTCCCCTAGATCCGAACGCCTTTGG
GAGTTTTAGCTGAAATCCTGCGCGCCGAATACGTGTGCGTCGCTGCGGAA
GTGACGCTGGGTCTGATTGCGCCGCTCACGCTGGCAGCGACATCGTCGAC
CGTTTCAACGTCATTGGTTACAACATCGACTGTTTCCACAACCGAGGAGG
TGTTTCTCTCTGCGCGGCTGCACCAGCCCGGTTGGGGCAGCGAAGGGGGA
GCGGGAGGGAGGGCGGGAGAGGGCAGGGCAGGGCGTGAGACCGAAAGTGA
AACGGCTGCCTCAGCCGCGGTGCACTCGGCCCTCCTCTTGGTGCTGCCCG
ACCTGTTAACGGTACTGGCCTGCGCTTTTGCGGGAGCCGCCATCTCCTCG
GTCGGTGGAGGAGGAGGAGGAGGAGGAGAAGAGGGAGGAGAGGGGCAGGT
AGGCTAATGTCCATCATGACAGATGCGCGCTACGGTACGGATAGCAAACC
TATTTTTTCTGAGGCTCCTCACTGGTGGAACTCTATAGTATTACGGGGGA
CCATAGTAAAGAGGACCTACGGTACACACAAAAAACTATATATTTTCCTA
TTTTTGCTGACAATATTTAGTCCTAATTACTATGGTCCCCCGCAACATCA
GCAAGTCATCAGTACTATTGGCAAGTGGTTAGTACTATTGGCAAGTGGTT
AGTACTATTGGTAAGTGGTTAGTACTATTGGCAAGTGGTTAGTACTATTG
GCAAGTGGTTAGTACTATTGGTAAGTGGTTAGTACTATTGGCAAGTGGTT
AGTACTATTGGCAAGTGGTTAGTACTGTTAGTAAGTGGTTAATACTATTG
GTAAGTGGTTAGTACTATTAGTAAGTGGTTAGTACTATTAGTAGGTCACT
AGTACTATTAGTGACTGTTTAGTAAGTCACTCAAAAACTGATTTAGAGAG
AAGCTAAAAGTAGAACCCTGCTGTAGTAGCATGTGTGAAGTGTGAAGGGG
CCTCTTTTTACCTGCTGGGTGAAGTCCGAAATCCAGTACGAGTGTGTTGA
ACAGTGAAGCCGGAGATCTGAGCCGTCCGACCTAAAATCTCCGAAAAAAT
GTTTTTTTTTCCATCTCCGAAAAAACTTGTTTTTTTCATGCCCGAAAAAA
ACGTTTGTGTGTTCAATGCCTTCCACCAGCGCGCATGGTTGATGACGACA
CGGCATACCTTATTTATTACACCCACCAGGACGAGTTCCTAGCGAGATAT
AGCAAGGCATAACCTAAATTTGCCCCAATAAGTCTTACAGCCCACCCGCG
GGAAATATGGGCAGAAGAGCTGTCTCTCACAGCTCACACCCCCGGGAAAA
AAAAGTGTAAAAGAGCTGTCTCGTACAGCTCACACCTGGCCACTTGGCAA
ACATGGGCTGGCGAACGTGAGATAGCTCGTGTAGCTTTTACAGATATCGA
TTGATGTAGGTATCCCAGACGCAAGTAAGGGATCAAAGGTATGGTGAGCT
GATCTCTCCGACGTGTGAAGAATTCTCCTCCCCCGTCTGCCTGGTCCGGT
CAAAACCTCGTGTGCTCGGCGCCGGCAGTGGAGGGCGGGCAGGGTCTGTG
GTCATACGACTACATACGCCCATGCGTGACATCAGTATGGGCCCCCCCCC
CCCCCCCCCGCCACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCC
CGTCCTCCTTTTCCTCCTCCTCAGTCTTCGTCTATGACGCGGCGGCGTCG
GCGGCGGTCAGTATCATCATCGTCGGCGCCGAGTGGTAATTGTATTTCTC
GCGGGTGCGGTTCTCGCGGGAGCGCTAACGACGCGGCTCCCCTCGAGGTG
ACGCGATCGTTTGCACAAGAACGGGAGTTCGTGGAAAGTAGGGAAGGCGG
TACTCGCGGGCGTGCTGGCAAGGCCAAGGATGAGGGGGCGCTGCTAAGGT
CGCGGTTGCCGTGGTTCGTGCCGAGCGGGGCGCTTGGGGCGGCGTTTTAC
GCGGTGACTGCTGGAGGCGTGTTCGAAGAAGTGAGGCGCGAGCACCTTCT
GGGTGAGTTTGCACCTAGCTCCTTGCTAGCTCCCTGCTAGCTCCTTGATC
AGGTGTGATTGGTTGGTTGTCGAGCTGAGCCCAGGGAAAGGGGAGAGCCG
TAACCTCTGTCCGCCTTTGCCCGATTGCCGCGCAGAAAATCGGTGCGCTA
GACCTGCCCCCTCCCCCCCCCCCTACCTACGTTCCAGCCGGTATACTTTC
GCTTCTCGAATTAGCTCGTAGACAAAAAATCACGTACGATCGACCGCGGG
GAGGAGCGAGTTGATTATCATCACCCCCCAGTAAATATGCATTTTTGCAT
ATTTTAGGAAGGGTTGGCGTCGGTTGACGACGATGTAAAACACGCCTTCT
CACTGCGTGAGCTGGACAACTAGGGAACCGTTAGGAATAGGCGGTGACCA
CCACTAGCGGTCGAGTTCGATAATTGGTGCGGGGTGGAGGAAGAGGGAAT
GAGCGTATCATGTACCAGGTAGTATTTACTGGTATATGGAAAGGCACCGA
TGAGACAGGTACATAGTAGTATACCAAATGCGGTATCTAAAAGTGGTCAA
ACCAGAAACCAACTAGATCGACGCTGTCATCCAATGTAACGAAGTCCACC
GCAGAAGCGGTTCTTAGTACGATGCAGCTCACCTCTCATGCGACTGACCC
AACACTTCACGTCGTTTCGCGCTCGGTTCAAGCAATGTCTGCCTGGTCGG
TGAAAATCCACCGTGCTCCGTCCCGGCACTGTAGGGATGCAAGGGTCTAT
GGTCATACGACTACATTTATGCATGACACGAGCACAGCCCCTACCCCTCC
TACCCCAGAGTCTATGGTCTTACGACTACGGCCATGCATGATAATGAGTA
CCCCCCCCCCCCCTCCCTTACCCCCGACCCCCTTTCCCACCGCTCTGCGC
GAACGCCTCCGATGCACAGAGGGATATTGGTTCTTGCGCCCGGAACACAC
CCGCACGACGCTGTCGGCGGTGTTTTCGGCGGTTTTCCTGCTGCGTTCGC
TTTCGGGGGGAAGGGACAGTGACGATGAAAGTGGGGTCGCCTTTAATCCT
TTGCGGCCCTGGTTCCGGTTTTTCGGGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11431:3624..7453-

>mRNA_M-pyrifera_M_contig11431.2983.1 ID=mRNA_M-pyrifera_M_contig11431.2983.1|Name=mRNA_M-pyrifera_M_contig11431.2983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2004bp|location=Sequence derived from alignment at M-pyrifera_M_contig11431:3624..7453- (Macrocystis pyrifera P11B4 male)
CTGGGTTGGCGAGGAGGCGTATTTTCGACGTCGACACTAGCGTTCGGAGG
CGTGTTCATCATTCGCGCCGGCCGGTGGGCGTTGTTGCTATTTGACCCCT
TTCTTCTTGAAGCTGTTGCGGTGCTCTCGCCCCCAGGGACGTTTGAGAGG
GTTTCTCTCGCAGGCGGAGGGGAGGAGGGGGAAGGGTTGGTGGCGACCGA
GAGGTTCCTGGCGGTCTTGCTCGTGTCGGCCGCCTGCTACACCTTGGCAG
GATTTGCGTTCGTTCGGCGCCTCTTGGGGCATCGATTGCTGGGTTGGCGA
GGAGGCGTATTTTCGACGTCGACACTAGCGTTCGGAGGCGTGTTCATCAT
TCGCGCCGGCCGGTGGGCGTTGTTGCTATTTGACCCCTTTCTTCTTGAAG
CTGTTGCGGTGCTCTCGCCCCCAGGGACGTTTGAGAGGGTTTCTCTCGCA
GGCGGAGGGGAGGAGGGGGAAGGGTTGGTGGCGACCGAGAGGTTCCTGGC
GGTCTTGCTCGTGTCGGCCGCCTGCTACACCTTGGCAGGATTTGCGTTCG
TTCGGCGCCTCTTGGGGCATCGATTGATCCGAACGCCTTTGGGAGTTTTA
GCTGAAATCCTGCGCGCCGAATACGTGTGCGTCGCTGCGGAAGTGACGCT
GGGTCTGATTGCGCCGCTCACGCTGGCAGCGACATCGTCGACCGTTTCAA
CATCCGAACGCCTTTGGGAGTTTTAGCTGAAATCCTGCGCGCCGAATACG
TGTGCGTCGCTGCGGAAGTGACGCTGGGTCTGATTGCGCCGCTCACGCTG
GCAGCGACATCGTCGACCGTTTCAACGGCAGGGCGTGAGACCGAAAGTGA
AACGGCTGCCTCAGCCGCGGTGCACTCGGCCCTCCTCTTGGTGCTGCCCG
ACCTGTTAACGGTACTGGCCTGCGCTTTTGCGGGAGCCGCCATCTCCTCG
GTCGGTGGAGGAGGAGGAGGAGGAGGAGAAGAGGGAGGAGAGGGGCAGGG
CAGGGCGTGAGACCGAAAGTGAAACGGCTGCCTCAGCCGCGGTGCACTCG
GCCCTCCTCTTGGTGCTGCCCGACCTGTTAACGGTACTGGCCTGCGCTTT
TGCGGGAGCCGCCATCTCCTCGGTCGGTGGAGGAGGAGGAGGAGGAGGAG
AAGAGGGAGGAGAGGGGCAGTGTAAAAGAGCTGTCTCGTACAGCTCACAC
CTGGCCACTTGGCAAACATGGGCTGGCGAACGTGAGATAGCTCTGTAAAA
GAGCTGTCTCGTACAGCTCACACCTGGCCACTTGGCAAACATGGGCTGGC
GAACGTGAGATAGCTCAACGGGAGTTCGTGGAAAGTAGGGAAGGCGGTAC
TCGCGGGCGTGCTGGCAAGGCCAAGGATGAGGGGGCGCTGCTAAGGTCGC
GGTTGCCGTGGTTCGTGCCGAGCGGGGCGCTTGGGGCGGCGTTTTACGCG
GTGACTGCTGGAGGCGTGTTCGAAGAAGTGAGGCGCGAGCACCTTCTGGA
ACGGGAGTTCGTGGAAAGTAGGGAAGGCGGTACTCGCGGGCGTGCTGGCA
AGGCCAAGGATGAGGGGGCGCTGCTAAGGTCGCGGTTGCCGTGGTTCGTG
CCGAGCGGGGCGCTTGGGGCGGCGTTTTACGCGGTGACTGCTGGAGGCGT
GTTCGAAGAAGTGAGGCGCGAGCACCTTCTGGAGGGATATTGGTTCTTGC
GCCCGGAACACACCCGCACGACGCTGTCGGCGGTGTTTTCGGCGGTTTTC
CTGCTGCGTTCGCTTTCGGGGGGAAGGGACAGTGACGATGAAAGTGGGGT
CGCCTTTAATCCTTTGCGGCCCTGGTTCCGGTTTTTCGGGTTTAGGGATA
TTGGTTCTTGCGCCCGGAACACACCCGCACGACGCTGTCGGCGGTGTTTT
CGGCGGTTTTCCTGCTGCGTTCGCTTTCGGGGGGAAGGGACAGTGACGAT
GAAAGTGGGGTCGCCTTTAATCCTTTGCGGCCCTGGTTCCGGTTTTTCGG
GTTT
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