mRNA_M-pyrifera_M_contig114290.2974.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114290.2974.1
Unique NamemRNA_M-pyrifera_M_contig114290.2974.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A0P0W476_ORYSJ (Os03g0800100 protein n=3 Tax=Oryza TaxID=4527 RepID=A0A0P0W476_ORYSJ)

HSP 1 Score: 174 bits (440), Expect = 3.790e-50
Identity = 92/164 (56.10%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGD NL + FVW+KK++ +  +G+KVD S KGEK ++ E   EI K K RREER +EK   EE+ ALL RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPIDV+ KNL    EFD +++EPY VF+GLT++E+ +L +DI+M+L+LD
Sbjct:  116 VSGYSNDSNPFGDPNLTEKFVWRKKIERDVSQGQKVDISVKGEKKKQRERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDVLLKNLNFSEEFDVELNEPYLVFKGLTVKEMEELRDDIKMHLDLD 279          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A453M3U4_AEGTS (Cactin_mid domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453M3U4_AEGTS)

HSP 1 Score: 171 bits (433), Expect = 1.040e-48
Identity = 93/164 (56.71%), Postives = 125/164 (76.22%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGD NL + FVW+KK+     EG+KVD S K EK R+ E   EI K K RREER +EK   EE+ ALL RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPIDV+ KNL    EFD +++EPY VF+GLT++E+ +L++DI+M+L+LD
Sbjct:  136 VSGYSNDSNPFGDPNLTENFVWRKKIDRAVTEGQKVDISVKAEKKRQRERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKFRSEIRLREGRTKPIDVLLKNLNFADEFDVELNEPYLVFKGLTVKEMEELHDDIKMHLDLD 299          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A3ANP5_ORYSJ (Uncharacterized protein OSJNBa0052F07.12 n=17 Tax=Oryzeae TaxID=147380 RepID=A3ANP5_ORYSJ)

HSP 1 Score: 174 bits (440), Expect = 6.150e-48
Identity = 92/164 (56.10%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGD NL + FVW+KK++ +  +G+KVD S KGEK ++ E   EI K K RREER +EK   EE+ ALL RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPIDV+ KNL    EFD +++EPY VF+GLT++E+ +L +DI+M+L+LD
Sbjct:  116 VSGYSNDSNPFGDPNLTEKFVWRKKIERDVSQGQKVDISVKGEKKKQRERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDVLLKNLNFSEEFDVELNEPYLVFKGLTVKEMEELRDDIKMHLDLD 279          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A5P1FBI7_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FBI7_ASPOF)

HSP 1 Score: 173 bits (439), Expect = 1.360e-47
Identity = 89/164 (54.27%), Postives = 131/164 (79.88%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGDSNL +TFVW+KK++ +  +GR++D S K EK R++E   EI K K RREER +EK   EE+ ALL RER  A+FQDWE++E EFH+ Q++ RS+IR+REGR KPID++ KNL +  +FD +++EPY VF+GLT++E+ +L++DI+M+L+LD
Sbjct:  141 VSGYSNDSNPFGDSNLGETFVWRKKIERDVVQGRELDISVKAEKKRQKERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKREEEFHFDQSKVRSQIRLREGRMKPIDILSKNLNVSDDFDIEINEPYTVFKGLTVKEMEELHDDIKMHLDLD 304          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A6P5FRK7_ANACO (cactin n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FRK7_ANACO)

HSP 1 Score: 172 bits (435), Expect = 3.160e-47
Identity = 90/164 (54.88%), Postives = 126/164 (76.83%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGD+NL + FVW+KK++ +  +GR VD S K EK R+ E   EI K K RREER +EK   EE+ A+L RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPIDV+ KNL    +FD +++EPY VF+GLT++E+ +L +DI+M+L+LD
Sbjct:  119 VSGYSNDSNPFGDANLTEKFVWRKKIERDVAQGRPVDISVKSEKKRQRERMAEIEKVKKRREERAIEKAQHEEEMAMLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDVLLKNLNFSEDFDIEINEPYMVFKGLTVKEMEELQDDIKMHLDLD 282          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: I1GM40_BRADI (Uncharacterized protein n=28 Tax=Pooideae TaxID=147368 RepID=I1GM40_BRADI)

HSP 1 Score: 171 bits (433), Expect = 5.440e-47
Identity = 93/164 (56.71%), Postives = 124/164 (75.61%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGD NL + FVW+KK++    EG KVD S K EK R+ E   EI K K RREER +EK   EE+ ALL RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPIDV+ KNL    EFD +++EPY VF+GLT++E+ +L +DI+M+L+LD
Sbjct:  111 VSGYSNDSNPFGDPNLTENFVWRKKIERAVTEGEKVDISVKSEKKRQRERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKFRSEIRLREGRTKPIDVLLKNLNFADEFDVELNEPYLVFKGLTVKEMEELRDDIKMHLDLD 274          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: K4A6Q4_SETIT (Uncharacterized protein n=20 Tax=PACMAD clade TaxID=147370 RepID=K4A6Q4_SETIT)

HSP 1 Score: 170 bits (430), Expect = 1.590e-46
Identity = 91/164 (55.49%), Postives = 125/164 (76.22%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGD NL + FVW+KK++ +  +G+KVD S K EK R+ E   EI K K RREER +EK   EE+  LL RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPIDV+ KNL    EFD +++EPY VF+GLT++E+ +L +DI+M+L+LD
Sbjct:  121 VSGYSNDSNPFGDPNLTENFVWRKKIERDVSQGQKVDISVKSEKKRQLERMAEIEKVKKRREERAIEKAQHEEEMQLLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDVLLKNLSFSDEFDVELNEPYLVFKGLTVKEMEELRDDIKMHLDLD 284          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A8J5X6M7_ZIZPA (Cactin_mid domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5X6M7_ZIZPA)

HSP 1 Score: 166 bits (419), Expect = 5.240e-46
Identity = 87/164 (53.05%), Postives = 124/164 (75.61%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GY +++NPFGD NL + FVW+KK++ +  +G+KVD S K EK ++ E   EI K K RREER +EK   EE+ ALL RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPID++ KNL    EFD +++EPY VF+GL ++++ +L +DI+M+L+LD
Sbjct:  110 VSGYCNDSNPFGDPNLTEKFVWRKKIERDVSQGQKVDISVKSEKKKQRERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDILLKNLNFTEEFDVELNEPYLVFKGLAVKDMEELRDDIKMHLDLD 273          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A2I0AFL2_9ASPA (Uncharacterized protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AFL2_9ASPA)

HSP 1 Score: 167 bits (424), Expect = 1.290e-45
Identity = 88/164 (53.66%), Postives = 124/164 (75.61%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGDSNL + FVW+KK++ +  +G  VD S   EK R+ E   EI K K RREER +EK   EE+ A+L RER  A+FQDWE+KE EFH+ Q++ RS+IR+REGR KPIDV+ KNL    +FD +++EPY VF+GLT++E+ +L +DI+MYL++D
Sbjct:  137 VSGYSNDSNPFGDSNLTEKFVWRKKIERDVSQGVPVDISVSSEKKRQRERMAEIEKVKKRREERAIEKAQHEEEMAMLARERARAEFQDWEKKEEEFHFDQSKVRSQIRLREGRVKPIDVLAKNLNCSDDFDIEINEPYMVFKGLTVKEMEELRDDIKMYLDMD 300          
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Match: A0A6I9RVZ9_ELAGV (cactin n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RVZ9_ELAGV)

HSP 1 Score: 167 bits (422), Expect = 2.170e-45
Identity = 87/164 (53.05%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    1 LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEELQREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYKQARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEELVQLNEDIRMYLELD 492
            ++GYS+++NPFGDSNL + FVW+KK++ +  +G+ +D S K EK R+ E   EI K K RREER +EK   EE+ A+L RER  A+FQDWE+KE EFH+ Q++ RSEIR+REGR KPID++ KNL    +FD +++EPY VF+GLT++E+ +L++DI+M+L++D
Sbjct:  121 VSGYSNDSNPFGDSNLTEKFVWRKKIERDVAQGQPLDISVKAEKKRQRERMAEIEKVKKRREERAIEKAQHEEEMAMLARERARAEFQDWEKKEEEFHFDQSKIRSEIRLREGRIKPIDILSKNLNGSEDFDIEINEPYMVFKGLTVKEMEELHDDIKMHLDMD 284          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114290.2974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P0W476_ORYSJ3.790e-5056.10Os03g0800100 protein n=3 Tax=Oryza TaxID=4527 RepI... [more]
A0A453M3U4_AEGTS1.040e-4856.71Cactin_mid domain-containing protein n=1 Tax=Aegil... [more]
A3ANP5_ORYSJ6.150e-4856.10Uncharacterized protein OSJNBa0052F07.12 n=17 Tax=... [more]
A0A5P1FBI7_ASPOF1.360e-4754.27Uncharacterized protein n=3 Tax=Asparagus officina... [more]
A0A6P5FRK7_ANACO3.160e-4754.88cactin n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A... [more]
I1GM40_BRADI5.440e-4756.71Uncharacterized protein n=28 Tax=Pooideae TaxID=14... [more]
K4A6Q4_SETIT1.590e-4655.49Uncharacterized protein n=20 Tax=PACMAD clade TaxI... [more]
A0A8J5X6M7_ZIZPA5.240e-4653.05Cactin_mid domain-containing protein n=1 Tax=Zizan... [more]
A0A2I0AFL2_9ASPA1.290e-4553.66Uncharacterized protein n=1 Tax=Apostasia shenzhen... [more]
A0A6I9RVZ9_ELAGV2.170e-4553.05cactin n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RV... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114290contigM-pyrifera_M_contig114290:59..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score175.3
Seed ortholog evalue2.4e-41
Seed eggNOG ortholog40148.OGLUM03G37380.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Conserved mid region of cactin
EggNOG OGs37MJ3@33090,3G77I@35493,3I2J2@38820,3KQGI@4447,KOG2370@1,KOG2370@2759
COG Functional cat.T
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.9499211-CDS-M-pyrifera_M_contig114290:58..5501622815658.9499211-CDS-M-pyrifera_M_contig114290:58..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114290 59..550 +
1692277508.8616586-CDS-M-pyrifera_M_contig114290:58..5501692277508.8616586-CDS-M-pyrifera_M_contig114290:58..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114290 59..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114290.2974.1prot_M-pyrifera_M_contig114290.2974.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114290 59..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114290.2974.1

>prot_M-pyrifera_M_contig114290.2974.1 ID=prot_M-pyrifera_M_contig114290.2974.1|Name=mRNA_M-pyrifera_M_contig114290.2974.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
LAGYSDETNPFGDSNLAQTFVWKKKVQSEREEGRKVDTSRKGEKARKEEL
QREILKAKSRREEREMEKQLMEEQRALLDRERNLAQFQDWEEKEIEFHYK
QARKRSEIRIREGRAKPIDVIYKNLQLDPEFDFDVHEPYEVFRGLTLEEL
VQLNEDIRMYLELD
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mRNA from alignment at M-pyrifera_M_contig114290:59..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114290.2974.1 ID=mRNA_M-pyrifera_M_contig114290.2974.1|Name=mRNA_M-pyrifera_M_contig114290.2974.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig114290:59..550+ (Macrocystis pyrifera P11B4 male)
CTGGCAGGCTACAGCGACGAAACGAATCCTTTTGGCGACTCGAACCTCGC GCAGACCTTCGTCTGGAAGAAGAAGGTCCAGAGCGAGCGCGAGGAGGGGC GGAAGGTGGACACCTCGAGGAAGGGAGAGAAGGCGAGGAAGGAGGAGCTC CAGAGGGAGATCCTCAAAGCCAAGAGCCGCAGAGAGGAGCGAGAGATGGA GAAGCAGCTGATGGAGGAGCAGAGGGCGCTGCTGGACCGCGAGAGGAATC TCGCGCAGTTCCAGGACTGGGAGGAGAAGGAGATCGAGTTCCACTACAAG CAGGCCCGCAAGAGGAGCGAGATCCGCATCAGGGAGGGCAGGGCCAAGCC GATCGACGTCATCTACAAGAACCTCCAGCTCGACCCAGAGTTCGACTTTG ACGTGCACGAGCCCTACGAGGTGTTCAGGGGCCTCACCCTCGAGGAGCTG GTGCAGCTCAACGAGGACATCCGCATGTACCTCGAGCTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114290:59..550+

>mRNA_M-pyrifera_M_contig114290.2974.1 ID=mRNA_M-pyrifera_M_contig114290.2974.1|Name=mRNA_M-pyrifera_M_contig114290.2974.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig114290:59..550+ (Macrocystis pyrifera P11B4 male)
CTGGCAGGCTACAGCGACGAAACGAATCCTTTTGGCGACTCGAACCTCGC
GCAGACCTTCGTCTGGAAGAAGAAGGTCCAGAGCGAGCGCGAGGAGGGGC
GGAAGGTGGACACCTCGAGGAAGGGAGAGAAGGCGAGGAAGGAGGAGCTC
CAGAGGGAGATCCTCAAAGCCAAGAGCCGCAGAGAGGAGCGAGAGATGGA
GAAGCAGCTGATGGAGGAGCAGAGGGCGCTGCTGGACCGCGAGAGGAATC
TCGCGCAGTTCCAGGACTGGGAGGAGAAGGAGATCGAGTTCCACTACAAG
CAGGCCCGCAAGAGGAGCGAGATCCGCATCAGGGAGGGCAGGGCCAAGCC
GATCGACGTCATCTACAAGAACCTCCAGCTCGACCCAGAGTTCGACTTTG
ACGTGCACGAGCCCTACGAGGTGTTCAGGGGCCTCACCCTCGAGGAGCTG
GTGCAGCTCAACGAGGACATCCGCATGTACCTCGAGCTGGACCTGGCAGG
CTACAGCGACGAAACGAATCCTTTTGGCGACTCGAACCTCGCGCAGACCT
TCGTCTGGAAGAAGAAGGTCCAGAGCGAGCGCGAGGAGGGGCGGAAGGTG
GACACCTCGAGGAAGGGAGAGAAGGCGAGGAAGGAGGAGCTCCAGAGGGA
GATCCTCAAAGCCAAGAGCCGCAGAGAGGAGCGAGAGATGGAGAAGCAGC
TGATGGAGGAGCAGAGGGCGCTGCTGGACCGCGAGAGGAATCTCGCGCAG
TTCCAGGACTGGGAGGAGAAGGAGATCGAGTTCCACTACAAGCAGGCCCG
CAAGAGGAGCGAGATCCGCATCAGGGAGGGCAGGGCCAAGCCGATCGACG
TCATCTACAAGAACCTCCAGCTCGACCCAGAGTTCGACTTTGACGTGCAC
GAGCCCTACGAGGTGTTCAGGGGCCTCACCCTCGAGGAGCTGGTGCAGCT
CAACGAGGACATCCGCATGTACCTCGAGCTGGAC
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