mRNA_M-pyrifera_M_contig114217.2965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114217.2965.1
Unique NamemRNA_M-pyrifera_M_contig114217.2965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: A0A4D9DFM4_9STRA (Palmitoyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFM4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.240e-26
Identity = 63/135 (46.67%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   16 IRCMCMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWS------PAE-----GLVGSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            I C CM  TQ A  +YC+ CRK   GLDHHC+WLNT +G RNYF F+++S++G+LQF LQS+  +LL+T W       PA      G   ++ A   +  A S  AL  F    SLC FH YLL  G GTYDW++
Sbjct:   76 IPCRCMAYTQ-AHSRYCASCRKSVPGLDHHCLWLNTCIGARNYFFFFLLSLAGTLQFALQSLISILLLTHWLNTTEEVPAMVQRTLGRAVTYQAILIIHTAMSGIALLSFA---SLCVFHGYLLTRGLGTYDWIL 206          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: G4ZU25_PHYSP (Palmitoyltransferase n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZU25_PHYSP)

HSP 1 Score: 106 bits (264), Expect = 4.020e-25
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 TLLQTIRCMCMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWSP---AEGLVGSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            T++ T  C+C       P +YC +C K++ GLDHHC WLNT +   NY  FY + VS + Q LLQ+V G+L+ T W     A    G   A  AL+   +A  L++  + V L GFHTYLL +G GTYD+++
Sbjct:   53 TIVITAWCICESRDPAKPSRYCGLCYKNSPGLDHHCTWLNTCIAESNYEAFYCLVVSATCQTLLQTVIGILMCTLWQSEVKANAAEGWDQAVIALLWIHNAACLSLTNSFVLLAGFHTYLLRVGMGTYDFIL 184          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: A0A5A8DYM4_CAFRO (Palmitoyltransferase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYM4_CAFRO)

HSP 1 Score: 103 bits (257), Expect = 3.220e-23
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   16 IRCMCMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWSPAEGLVGSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWV 384
            + C CM+ TQ +    CS+CRK  +GLDHHC +LNT +G RNY  F+ +S+  +LQ   Q VF VL MT W            +Y L+  Q+  A    GA  SL GFH YLL +G GTYDW+
Sbjct:   73 VACPCMKRTQSSQSN-CSLCRKPVVGLDHHCYFLNTCIGKRNYAHFFALSLCSTLQMAAQVVFSVLGMTVWIERGN---DNVLYYVLVGLQALIAAVAGGATCSLLGFHVYLLWIGMGTYDWM 191          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: A0A225X1Z1_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1Z1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.800e-23
Identity = 51/124 (41.13%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   25 MCMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWSP---AEGLVGSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            +C       P +YC +C K++ GLDHHC WLNT +   NY  FY + VS + Q LLQS  G+++ T W     A  + G   A  AL+   +A  L++  + V L GFHTYLL +G GTYD+++
Sbjct:   63 ICESRDPSKPSRYCGLCFKNSPGLDHHCTWLNTCIAESNYEAFYCLVVSATCQTLLQSALGIIMCTLWEAEVRANAVDGWETAVIALLWIHNAACLSLTNSFVLLAGFHTYLLYVGMGTYDFIL 186          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: K3X7H4_GLOUD (Palmitoyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7H4_GLOUD)

HSP 1 Score: 96.3 bits (238), Expect = 1.240e-22
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   52 PPQ---YCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAW-SPAEGLVGS-W-PAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            PP+   YC++C K++ GLDHHC WLNT +G  NY  FY + VS ++Q LLQ+V G+L+ T W S  +  V S W      L+   +A  L++  +   L GFHTYLL +G GTYD+++
Sbjct:   14 PPKVTRYCTICCKNSPGLDHHCTWLNTCIGENNYEAFYCLVVSATIQTLLQAVIGILMATLWFSQVKAQVSSDWHQPMLVLLWIHNAICLSLANSYFLLAGFHTYLLWIGSGTYDFIL 131          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: D0P2Q3_PHYIT (Palmitoyltransferase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P2Q3_PHYIT)

HSP 1 Score: 97.4 bits (241), Expect = 8.780e-22
Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   25 MCMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAW------SPAEGLVGSWP-AFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            +C       P +YC +C K++ GLDHHC WLNT +   NY  FY + VS + Q LLQ+V G+L+ T W      + AEG    W  A   L+   +A  +++  + + L GFHTYLL +G GTYD+++
Sbjct:   61 ICELRDPSKPSRYCGLCFKNSPGLDHHCTWLNTCIAESNYESFYCLVVSATCQTLLQTVIGILMCTLWQSEVKTNAAEG----WDKALITLIWIHNAACMSLTSSFLLLAGFHTYLLCIGMGTYDFIL 184          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: W2N3P4_PHYPR (Palmitoyltransferase n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2N3P4_PHYPR)

HSP 1 Score: 97.4 bits (241), Expect = 1.460e-21
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   46 EAPPQ---YCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWSP---AEGLVGSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            +APP+   YC +C K++ GLDHHC WLNT +   NY  FY + VS + Q LLQ+V G+L+ T W     A    G   A   L+   +A  +++  + V L GFHTYLL +G GTYD+++
Sbjct:   81 KAPPKESRYCGLCYKNSPGLDHHCTWLNTCIAESNYEAFYYLVVSSTCQTLLQTVIGILMCTLWQSEVKANTAEGWDEAVIVLLWIHNAACISLTNSFVLLAGFHTYLLYVGMGTYDFIL 200          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: A0A2P4Y4E9_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4E9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.580e-21
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   22 CMCMRETQEAP-----PQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWSPA--EGLVGSWP-AFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            C+C       P      +YC +C K++ GLDHHC WLNT +   NY  FY + VS + Q LLQ+V G+L+ T W           W  A   L+   +A  L++  + V L GFHTYLL +G GTYD+++
Sbjct:   60 CICESRDPSKPVPRKESRYCGLCYKNSPGLDHHCTWLNTCIAESNYEAFYCLVVSATCQTLLQTVLGILMCTLWESEVQTNATDGWETAVVVLLWIHNAACLSLTNSFVLLAGFHTYLLCVGMGTYDFIL 189          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: A0A329S9R6_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S9R6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.400e-21
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   46 EAPPQ---YCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGVLLMTAWSP---AEGLVGSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            + PP+   YC +C K++ GLDHHC WLNT +   NY  FY + VS + Q LLQ+V G+L+ T W     A    G   A  AL+   +A  +++  + V L GFHTYLL +G GTYD+++
Sbjct:   82 KVPPKESRYCGLCYKNSPGLDHHCTWLNTCIAESNYEAFYWLVVSAACQTLLQTVIGILMCTLWESEVKANAADGWDKAVIALLWIHNAACISLTNSFVLLAGFHTYLLCVGVGTYDFIL 201          
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Match: A0A2R5GQX8_9STRA (Palmitoyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQX8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-20
Identity = 52/124 (41.94%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   28 CMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSGSLQFLLQSVFGV-LLMTAWSPAEGLV---GSWPAFYALMAAQSAGALAIFGAVVSLCGFHTYLLVLGRGTYDWVV 387
            C R T +A  +YC+VC+K   GLDHHC WL   VGTRNY QFY++SV G +    Q V G+ L++   S  +G+    GS   F A++      ++ I  + +SL  FHTYLL +G+GTY +++
Sbjct:   77 CFR-TSQAKARYCAVCKKVVPGLDHHCPWLGHCVGTRNYLQFYLLSVMGWVCAAWQCVIGLYLVLDETSREQGIARAQGSKTTFAAILGVHFLCSVIILSSYISLWAFHTYLLYIGKGTYMYMI 199          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114217.2965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DFM4_9STRA1.240e-2646.67Palmitoyltransferase n=1 Tax=Nannochloropsis salin... [more]
G4ZU25_PHYSP4.020e-2541.67Palmitoyltransferase n=6 Tax=Phytophthora TaxID=47... [more]
A0A5A8DYM4_CAFRO3.220e-2344.72Palmitoyltransferase n=3 Tax=Cafeteria roenbergens... [more]
A0A225X1Z1_9STRA3.800e-2341.13Palmitoyltransferase n=1 Tax=Phytophthora megakary... [more]
K3X7H4_GLOUD1.240e-2244.07Palmitoyltransferase n=1 Tax=Globisporangium ultim... [more]
D0P2Q3_PHYIT8.780e-2239.84Palmitoyltransferase n=1 Tax=Phytophthora infestan... [more]
W2N3P4_PHYPR1.460e-2142.50Palmitoyltransferase n=7 Tax=Phytophthora parasiti... [more]
A0A2P4Y4E9_9STRA4.580e-2139.23Palmitoyltransferase n=1 Tax=Phytophthora palmivor... [more]
A0A329S9R6_9STRA9.400e-2142.50Palmitoyltransferase n=1 Tax=Phytophthora cactorum... [more]
A0A2R5GQX8_9STRA1.010e-2041.94Palmitoyltransferase n=1 Tax=Hondaea fermentalgian... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114217contigM-pyrifera_M_contig114217:135..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog115417.EPrPW00000014217
KEGG koko:K20027
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1ME2P@121069,COG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size387
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.167167-CDS-M-pyrifera_M_contig114217:134..4971622815658.167167-CDS-M-pyrifera_M_contig114217:134..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114217 135..497 -
1692277508.4256728-CDS-M-pyrifera_M_contig114217:134..4971692277508.4256728-CDS-M-pyrifera_M_contig114217:134..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114217 135..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.185746-UTR-M-pyrifera_M_contig114217:497..5211622815658.185746-UTR-M-pyrifera_M_contig114217:497..521Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114217 498..521 -
1692277508.4391627-UTR-M-pyrifera_M_contig114217:497..5211692277508.4391627-UTR-M-pyrifera_M_contig114217:497..521Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114217 498..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114217.2965.1prot_M-pyrifera_M_contig114217.2965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114217 135..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114217.2965.1

>prot_M-pyrifera_M_contig114217.2965.1 ID=prot_M-pyrifera_M_contig114217.2965.1|Name=mRNA_M-pyrifera_M_contig114217.2965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MCMRETQEAPPQYCSVCRKHTLGLDHHCVWLNTDVGTRNYFQFYVMSVSG
SLQFLLQSVFGVLLMTAWSPAEGLVGSWPAFYALMAAQSAGALAIFGAVV
SLCGFHTYLLVLGRGTYDWVV
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mRNA from alignment at M-pyrifera_M_contig114217:135..521-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114217.2965.1 ID=mRNA_M-pyrifera_M_contig114217.2965.1|Name=mRNA_M-pyrifera_M_contig114217.2965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig114217:135..521- (Macrocystis pyrifera P11B4 male)
ACCTTGCTGCAGACAATCCGTTGCATGTGCATGCGTGAGACGCAGGAAGC GCCTCCGCAGTACTGTTCTGTGTGTCGGAAGCACACGTTGGGTCTGGACC ACCACTGTGTGTGGCTGAACACAGACGTTGGCACTCGCAACTACTTCCAG TTCTACGTGATGAGCGTGAGCGGTTCGTTGCAGTTTCTGCTGCAGAGTGT GTTCGGGGTGCTGCTGATGACGGCTTGGAGTCCCGCAGAGGGGCTGGTGG GGAGCTGGCCTGCGTTCTATGCGCTGATGGCGGCCCAGAGTGCGGGGGCA CTGGCGATTTTCGGGGCCGTGGTGAGTCTGTGCGGCTTCCACACCTACCT GCTGGTGCTGGGCAGAGGTACCTACGACTGGGTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114217:135..521-

>mRNA_M-pyrifera_M_contig114217.2965.1 ID=mRNA_M-pyrifera_M_contig114217.2965.1|Name=mRNA_M-pyrifera_M_contig114217.2965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig114217:135..521- (Macrocystis pyrifera P11B4 male)
ATGTGCATGCGTGAGACGCAGGAAGCGCCTCCGCAGTACTGTTCTGTGTG
TCGGAAGCACACGTTGGGTCTGGACCACCACTGTGTGTGGCTGAACACAG
ACGTTGGCACTCGCAACTACTTCCAGTTCTACGTGATGAGCGTGAGCGGT
TCGTTGCAGTTTCTGCTGCAGAGTGTGTTCGGGGTGCTGCTGATGACGGC
TTGGAGTCCCGCAGAGGGGCTGGTGGGGAGCTGGCCTGCGTTCTATGCGC
TGATGGCGGCCCAGAGTGCGGGGGCACTGGCGATTTTCGGGGCCGTGGTG
AGTCTGTGCGGCTTCCACACCTACCTGCTGGTGCTGGGCAGAGGTACCTA
CGACTGGGTCGTGATGTGCATGCGTGAGACGCAGGAAGCGCCTCCGCAGT
ACTGTTCTGTGTGTCGGAAGCACACGTTGGGTCTGGACCACCACTGTGTG
TGGCTGAACACAGACGTTGGCACTCGCAACTACTTCCAGTTCTACGTGAT
GAGCGTGAGCGGTTCGTTGCAGTTTCTGCTGCAGAGTGTGTTCGGGGTGC
TGCTGATGACGGCTTGGAGTCCCGCAGAGGGGCTGGTGGGGAGCTGGCCT
GCGTTCTATGCGCTGATGGCGGCCCAGAGTGCGGGGGCACTGGCGATTTT
CGGGGCCGTGGTGAGTCTGTGCGGCTTCCACACCTACCTGCTGGTGCTGG
GCAGAGGTACCTACGACTGGGTCGTG
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