mRNA_M-pyrifera_M_contig114213.2964.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114213.2964.1
Unique NamemRNA_M-pyrifera_M_contig114213.2964.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A5A8CSJ7_CAFRO (Calponin-homology (CH) domain-containing protein n=9 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CSJ7_CAFRO)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-15
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   10 VGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            + R  L+FG+C VGD RDV VTL NPS T ++ +    +A +   PRRG L P +++++V+TF+P + G H+  + +   G L +  +RL G A     +L    R   A  RGP A P  F+   +FV
Sbjct:  672 LSRRMLYFGDCAVGDRRDVAVTLSNPSDTLDLDFSIANVAQYEVTPRRGRLGPQESRQLVVTFRPSNQGAHRMRMPIQLAGGLAQAELRLEGEALG---NLGGTKR---AVARGPGAPPEAFTTTRKFV 794          
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A7J6SJG0_PEROL (Chromosome X 22 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SJG0_PEROL)

HSP 1 Score: 80.9 bits (198), Expect = 3.710e-15
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    4 LEVGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            L V  + L FG CPVGD RD+++TLRN  A+  I W    ++H   +P  G + P  TQ+VV+TF P+SLG H+  IH+     L  V +  +G         E        +  G +A P  F+  Y+FV
Sbjct:  994 LSVAPSSLDFGGCPVGDRRDIVLTLRNEHASLPIDWAVPNVSHINVRPASGKIGPLSTQEVVVTFSPKSLGNHQRDIHVMYCNRLYSVVVYAIGWG-------EVAGGPGQKQRHGLEAIPEDFAPHYKFV 1117          
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A7J6N6N0_PEROL (Chromosome X 22 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6N6N0_PEROL)

HSP 1 Score: 79.3 bits (194), Expect = 1.250e-14
Identity = 47/131 (35.88%), Postives = 66/131 (50.38%), Query Frame = 1
Query:    4 LEVGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            L V  + L FG CPVGD RD+++TLRN  A+  I W     +H   +P  G + P  TQ+VV+TF P+SLG H+  IH+     L  V +  +G         E        +  G +A P  F+  Y+FV
Sbjct:  728 LSVAPSSLDFGGCPVGDRRDIVLTLRNEHASLPIDWAIPNTSHINVRPAAGKIGPLSTQEVVVTFSPKSLGNHQRDIHVMYCNKLYSVMVYAIGWG-------EVAGGPGQKQRHGLEAIPEDFAPEYKFV 851          
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A7J6MET3_PEROL (Chromosome X 22 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MET3_PEROL)

HSP 1 Score: 77.4 bits (189), Expect = 5.870e-14
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1
Query:    4 LEVGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            L V  + L FG CPVGD RD+++TLRN  A+  I W    ++H   +P  G + P  TQ+ V+TF P+SLG H+  I +     L  V +  +G         E        +  G +A P  F+  Y+FV
Sbjct:  569 LSVSPSSLDFGGCPVGDRRDIVLTLRNEHASLPIDWAVRSVSHINVRPSSGKIGPLSTQEAVVTFSPKSLGNHQRDISIMYCNKLYSVKVYAIGWG-------EVARGPGQKQRHGLEAIPEDFAPDYKFV 692          
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A7J6LL65_PERCH (Chromosome X 22 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6LL65_PERCH)

HSP 1 Score: 77.0 bits (188), Expect = 8.510e-14
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    4 LEVGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            L    A L FG CP+GD RD++VTLRN  A+  + W    ++H    P  G + P  TQ+VV+TF P+S+G H+  + +     L  + +  +G         E     R  + +G +A+   F+ +Y+FV
Sbjct:  239 LSASPASLDFGGCPMGDRRDIVVTLRNEHASLPVDWTVPNVSHITVMPASGKIGPLSTQEVVVTFSPKSIGHHQRNVRVMYCKSLYSLLVYAIGWG-------EVATVPREKRRKGLEANVDDFAPQYKFV 362          
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A7J6SJ98_PEROL (Chromosome X 22 n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SJ98_PEROL)

HSP 1 Score: 75.5 bits (184), Expect = 2.620e-13
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 1
Query:    4 LEVGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            L V  + L FG CPVG+ RD+++TLRN  A+  I W    I H   +P  G + P  TQ+VV+TF P+SLG H+  I +     L  V +  +G         E        +  G +A P  F+  Y+FV
Sbjct:  239 LSVAPSSLDFGGCPVGERRDIVLTLRNEHASLPIDWAIPIICHINVRPAAGKIGPLSTQEVVVTFSPKSLGNHQRDISIMYCNKLYSVKVYAIGWG-------EVAGGPGQKQRHGLEAIPEDFAPEYKFV 362          
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Match: A0A225WDF7_9STRA (MSP domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDF7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-7
Identity = 38/122 (31.15%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   31 FGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPRRGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKPPPDLEAELRERNAKMRGPDADPATFSRRYQFV 396
            FG+    D  D+L++L+N S         + +AH++  PR G L   Q+Q +V++F P  LG     + L   GD++++P++++G A    P   A  R     + GP A PA F+ +Y+F+
Sbjct:  459 FGDIRSYDRADLLISLKNVSGLPVRFEVPKGVAHYSISPRTGRLDVLQSQSLVVSFAPTQLGTFNSILLLRINGDVLEIPVKVLGKAAAVGPVPPASER----LVGGPLALPADFAPKYKFL 576          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114213.2964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8CSJ7_CAFRO1.110e-1537.21Calponin-homology (CH) domain-containing protein n... [more]
A0A7J6SJG0_PEROL3.710e-1535.88Chromosome X 22 n=2 Tax=Perkinsus olseni TaxID=325... [more]
A0A7J6N6N0_PEROL1.250e-1435.88Chromosome X 22 (Fragment) n=1 Tax=Perkinsus olsen... [more]
A0A7J6MET3_PEROL5.870e-1434.35Chromosome X 22 n=1 Tax=Perkinsus olseni TaxID=325... [more]
A0A7J6LL65_PERCH8.510e-1432.06Chromosome X 22 n=1 Tax=Perkinsus chesapeaki TaxID... [more]
A0A7J6SJ98_PEROL2.620e-1335.11Chromosome X 22 n=5 Tax=Perkinsus olseni TaxID=325... [more]
A0A225WDF7_9STRA1.800e-731.15MSP domain-containing protein n=1 Tax=Phytophthora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114213contigM-pyrifera_M_contig114213:134..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog2880.D7FQ58
Preferred nameCHDC2
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
EggNOG OGs2CBV6@1,2QQ4Q@2759
EC4.1.1.105,4.1.1.28
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.1168666-CDS-M-pyrifera_M_contig114213:133..5291622815658.1168666-CDS-M-pyrifera_M_contig114213:133..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114213 134..529 -
1692277508.4138365-CDS-M-pyrifera_M_contig114213:133..5291692277508.4138365-CDS-M-pyrifera_M_contig114213:133..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114213 134..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114213.2964.1prot_M-pyrifera_M_contig114213.2964.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114213 134..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114213.2964.1

>prot_M-pyrifera_M_contig114213.2964.1 ID=prot_M-pyrifera_M_contig114213.2964.1|Name=mRNA_M-pyrifera_M_contig114213.2964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
ALEVGRAKLWFGECPVGDYRDVLVTLRNPSATTEIAWHAEKIAHFATKPR
RGTLLPNQTQKVVLTFKPRSLGPHKPTIHLCGEGDLVKVPIRLVGTATKP
PPDLEAELRERNAKMRGPDADPATFSRRYQFV
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mRNA from alignment at M-pyrifera_M_contig114213:134..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114213.2964.1 ID=mRNA_M-pyrifera_M_contig114213.2964.1|Name=mRNA_M-pyrifera_M_contig114213.2964.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig114213:134..529- (Macrocystis pyrifera P11B4 male)
GCTTTGGAAGTTGGAAGGGCAAAGTTGTGGTTTGGAGAATGTCCTGTTGG TGATTATCGTGATGTGTTGGTCACTCTCCGGAATCCAAGTGCAACAACTG AAATTGCTTGGCATGCAGAGAAAATTGCACACTTTGCAACAAAGCCACGA CGCGGAACATTGCTTCCAAACCAAACCCAGAAAGTAGTTCTTACTTTCAA ACCAAGGTCGTTAGGACCTCACAAACCAACGATTCATCTTTGTGGTGAAG GTGATTTGGTCAAAGTACCTATTCGATTGGTTGGTACCGCTACAAAACCC CCACCAGATTTGGAAGCAGAATTGCGAGAACGGAATGCCAAGATGCGCGG ACCAGATGCGGATCCAGCAACGTTTTCTCGCCGGTATCAATTTGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114213:134..529-

>mRNA_M-pyrifera_M_contig114213.2964.1 ID=mRNA_M-pyrifera_M_contig114213.2964.1|Name=mRNA_M-pyrifera_M_contig114213.2964.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig114213:134..529- (Macrocystis pyrifera P11B4 male)
GCTTTGGAAGTTGGAAGGGCAAAGTTGTGGTTTGGAGAATGTCCTGTTGG
TGATTATCGTGATGTGTTGGTCACTCTCCGGAATCCAAGTGCAACAACTG
AAATTGCTTGGCATGCAGAGAAAATTGCACACTTTGCAACAAAGCCACGA
CGCGGAACATTGCTTCCAAACCAAACCCAGAAAGTAGTTCTTACTTTCAA
ACCAAGGTCGTTAGGACCTCACAAACCAACGATTCATCTTTGTGGTGAAG
GTGATTTGGTCAAAGTACCTATTCGATTGGTTGGTACCGCTACAAAACCC
CCACCAGATTTGGAAGCAGAATTGCGAGAACGGAATGCCAAGATGCGCGG
ACCAGATGCGGATCCAGCAACGTTTTCTCGCCGGTATCAATTTGTAGCTT
TGGAAGTTGGAAGGGCAAAGTTGTGGTTTGGAGAATGTCCTGTTGGTGAT
TATCGTGATGTGTTGGTCACTCTCCGGAATCCAAGTGCAACAACTGAAAT
TGCTTGGCATGCAGAGAAAATTGCACACTTTGCAACAAAGCCACGACGCG
GAACATTGCTTCCAAACCAAACCCAGAAAGTAGTTCTTACTTTCAAACCA
AGGTCGTTAGGACCTCACAAACCAACGATTCATCTTTGTGGTGAAGGTGA
TTTGGTCAAAGTACCTATTCGATTGGTTGGTACCGCTACAAAACCCCCAC
CAGATTTGGAAGCAGAATTGCGAGAACGGAATGCCAAGATGCGCGGACCA
GATGCGGATCCAGCAACGTTTTCTCGCCGGTATCAATTTGTA
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