mRNA_M-pyrifera_M_contig11420.2958.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11420.2958.1
Unique NamemRNA_M-pyrifera_M_contig11420.2958.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: W9RTL7_9ROSA (Histone n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RTL7_9ROSA)

HSP 1 Score: 253 bits (646), Expect = 6.940e-79
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 3 
Query:   45 TESLSYPF-RSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            T+S SYPF   MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   13 TDSESYPFDHRMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: A0A0C9RCG0_9HYME (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A0C9RCG0_9HYME)

HSP 1 Score: 248 bits (633), Expect = 3.690e-77
Identity = 133/144 (92.36%), Postives = 138/144 (95.83%), Query Frame = 3 
Query:   51 SLSYPFRSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            SL   F +MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 SLKNTFDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME)

HSP 1 Score: 248 bits (632), Expect = 5.380e-77
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 3 
Query:   48 ESLSYPFRSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            E L   F +MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 EPLKQIFDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: A4S0W7_OSTLU (Histone H3 n=6 Tax=Eukaryota TaxID=2759 RepID=A4S0W7_OSTLU)

HSP 1 Score: 247 bits (631), Expect = 5.610e-77
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   75 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTA+LALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: A0A164U858_9CRUS (Histone H3.3 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164U858_9CRUS)

HSP 1 Score: 248 bits (633), Expect = 6.110e-77
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 3 
Query:   63 PFRSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            PF  MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   20 PFLKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: A0A6A4NAB8_LUPAL (Histone H3 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6A4NAB8_LUPAL)

HSP 1 Score: 247 bits (631), Expect = 6.410e-77
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 3 
Query:   72 SMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            SMARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    4 SMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: E1ZR66_CHLVA (Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=E1ZR66_CHLVA)

HSP 1 Score: 247 bits (630), Expect = 7.920e-77
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   75 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: D7SZ96_VITVI (Histone H3 (Fragment) n=6 Tax=Mesangiospermae TaxID=1437183 RepID=D7SZ96_VITVI)

HSP 1 Score: 247 bits (631), Expect = 8.120e-77
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 3 
Query:   69 RSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            R MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   10 REMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: UPI000FFD84FD (histone H3-like n=1 Tax=Vombatus ursinus TaxID=29139 RepID=UPI000FFD84FD)

HSP 1 Score: 248 bits (634), Expect = 9.080e-77
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 3 
Query:   39 PLTESLSYPFRSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            P  E LS    +MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   34 PAQEKLSSSSLAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Match: A0A453R0W3_AEGTS (Histone domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453R0W3_AEGTS)

HSP 1 Score: 249 bits (635), Expect = 1.030e-76
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 3 
Query:   69 RSMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 482
            RSMARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   58 RSMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11420.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W9RTL7_9ROSA6.940e-7993.88Histone n=1 Tax=Morus notabilis TaxID=981085 RepID... [more]
A0A0C9RCG0_9HYME3.690e-7792.36Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321... [more]
A0A0C9RWZ2_9HYME5.380e-7791.72Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=... [more]
A4S0W7_OSTLU5.610e-7797.06Histone H3 n=6 Tax=Eukaryota TaxID=2759 RepID=A4S0... [more]
A0A164U858_9CRUS6.110e-7794.29Histone H3.3 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
A0A6A4NAB8_LUPAL6.410e-7797.08Histone H3 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
E1ZR66_CHLVA7.920e-7797.06Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
D7SZ96_VITVI8.120e-7796.38Histone H3 (Fragment) n=6 Tax=Mesangiospermae TaxI... [more]
UPI000FFD84FD9.080e-7790.54histone H3-like n=1 Tax=Vombatus ursinus TaxID=291... [more]
A0A453R0W3_AEGTS1.030e-7697.10Histone domain-containing protein n=1 Tax=Aegilops... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11420contigM-pyrifera_M_contig11420:648..8211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.4
Seed ortholog evalue1.5e-65
Seed eggNOG ortholog2880.D8LFG7
Preferred nameH3.3
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
Ec32 ortholog descriptionHistone H3
Ec32 orthologEc-04_002240.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons4
Model size1581
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11420.2958.1prot_M-pyrifera_M_contig11420.2958.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11420 722..7115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.7204487-UTR-M-pyrifera_M_contig11420:647..7211622815657.7204487-UTR-M-pyrifera_M_contig11420:647..721Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11420 648..721 +
1692277508.1853611-UTR-M-pyrifera_M_contig11420:647..7211692277508.1853611-UTR-M-pyrifera_M_contig11420:647..721Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11420 648..721 +
1622815657.7779944-UTR-M-pyrifera_M_contig11420:7115..82111622815657.7779944-UTR-M-pyrifera_M_contig11420:7115..8211Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11420 7116..8211 +
1692277508.27808-UTR-M-pyrifera_M_contig11420:7115..82111692277508.27808-UTR-M-pyrifera_M_contig11420:7115..8211Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11420 7116..8211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.7340071-CDS-M-pyrifera_M_contig11420:721..7391622815657.7340071-CDS-M-pyrifera_M_contig11420:721..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 722..739 +
1692277508.2016857-CDS-M-pyrifera_M_contig11420:721..7391692277508.2016857-CDS-M-pyrifera_M_contig11420:721..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 722..739 +
1622815657.7450151-CDS-M-pyrifera_M_contig11420:5643..57471622815657.7450151-CDS-M-pyrifera_M_contig11420:5643..5747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 5644..5747 +
1692277508.216131-CDS-M-pyrifera_M_contig11420:5643..57471692277508.216131-CDS-M-pyrifera_M_contig11420:5643..5747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 5644..5747 +
1622815657.7556036-CDS-M-pyrifera_M_contig11420:6356..65371622815657.7556036-CDS-M-pyrifera_M_contig11420:6356..6537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 6357..6537 +
1692277508.2359009-CDS-M-pyrifera_M_contig11420:6356..65371692277508.2359009-CDS-M-pyrifera_M_contig11420:6356..6537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 6357..6537 +
1622815657.766058-CDS-M-pyrifera_M_contig11420:7007..71151622815657.766058-CDS-M-pyrifera_M_contig11420:7007..7115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 7008..7115 +
1692277508.264876-CDS-M-pyrifera_M_contig11420:7007..71151692277508.264876-CDS-M-pyrifera_M_contig11420:7007..7115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11420 7008..7115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11420.2958.1

>prot_M-pyrifera_M_contig11420.2958.1 ID=prot_M-pyrifera_M_contig11420.2958.1|Name=mRNA_M-pyrifera_M_contig11420.2958.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*
back to top

mRNA from alignment at M-pyrifera_M_contig11420:648..8211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11420.2958.1 ID=mRNA_M-pyrifera_M_contig11420.2958.1|Name=mRNA_M-pyrifera_M_contig11420.2958.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7564bp|location=Sequence derived from alignment at M-pyrifera_M_contig11420:648..8211+ (Macrocystis pyrifera P11B4 male)
GCCAACCCCTGAAACTTCGGAGACCAATACTCTAAAGTCCCCTAACAGAA
AGCTTGAGCTACCCGTTCAGAAGCATGGCCCGCACGAAGCAGGTGAGGGC
GTTGGCGTGGCGAACGCATTATTTGCCTCGTTTGTCTGGAGTCGAATACC
ATTTTTGTCACCTCTCGCCGTCTCGCTGGGAATGGGCAACGAACCTCTCT
CGTCCCGCGAGTCCCGAATTGACCTTTTAGGCGCTCCCGCCCATGTCGCC
GACGAGGGTAGGACGGAACGAGCAAGAGTATGTAGACACCGCTTTCCCTC
CGAGAGAAGATGTGGTGACGCTGCCTCGAGCGGTTGGTAGCAAGCTCCCA
AATCACTTGGAGAGGAGTGTGGTGCAAATCTTTTAGCTTTCTTCGTTGGT
GCGCTGTCCGCAGTTACTTCATCTGAAAAAACATACCTGGTAAAACATAA
CTTGTACCGTGGCATTTGTGCCGTGCCGTGGCCGTTCCGGGATGCTGTTG
GCGCCCTCTCGCGTGGCGAATGTATCAGTCGTCGAAAAGTGTGTCCAGGC
TGGACTGAGGGCTGGTTGTCGGCGAGGTGCTAAAAGGCGGGGGGTTTTTC
GTGCCAGTGCTATTTAGTAATGGTAGACTGCTGTACCACCCGCATTGCTG
TACCTGGTGGGTGTCAGTTCGTTTTGTTTTATCCACCAACGACACGTAAC
TTGTCTGTCCTCTATTACAAAAAAAATAATACCTGGTATCGCATGTACAA
CTGCTCTTGTACGTGGGTAAAGAATGACGGACTGGTTGAGAGTTGGAGGA
CAAGCCGTCGTTCTTGTAGCGTTTTCCTCGATTCTTCTTTGTTTTCCCTT
TGTGATGGCTGATATTCAACATCTAAATGCAGCGCAAAAGTGTTCCGGGT
CTCCCTATCCTGTTTCTGGCCTGCTCTATTAAGTTCAAGTTTTGGAACAC
TCCCGTTGTTGTAAGAAGTTTGAAAGTTACGCCAGTCAGCGCCTGCGCGC
TGGCGTGTCCGTTGTCCATTCCAGAGACGGCCGTTACTCTTGTTTTGGAC
TTAAACCTCATACTCTCAAACGCAGGTATGAGGGTATACCAGGGCTCCTT
ATTACGCGTATTTTGTAATTACGGGTAATCGGTATCTGGAAGTTACGTTG
CGTACAGCAGTTACGGCAAAAAACGGGGATAATCACGCACCATCCCCGGT
CCCACTGTTTGTTCATTAACTCCAGTCCAAAGAAGGCTGTAGCACAAACT
GAACGTAGTTTTGAAACCGCGTGAGCAAGGCCGACCACGCGACATGTAAA
AAAGTACTATTTGTGCTATTTTGCTGTGTTGCTGTCTTCCACGTCTGCTT
TTCTATATATTCTGAATTATGTACTGCTGTTTTTCCGTTTCCTATGCGGT
TCGATTTTTGATGTTCAGATTTCGACCTGATCGCATTTTTTTATGTGATC
TTGGCAAATCGAAACAGCAGTCGTCCTATGCGGAAAAATCAGACTTATTA
CGCGTGCTGAGATTCGAACAAACGCCGCGAAGAGACGCGCTGGGTGCGCT
GCCCTGGCCGTAGCACCCAAGTGTCCGAGCCAAAGCTGACTGCCTGTGGT
CTGGCGGCGAAGAGACGTGGCGCGTGCGCTAGAGTCCAGCTGTCTTGGTA
TTTTGCGTTTCAAAATGTGTCTGACTGCTGCTGCTGCTGCTGCTGTACAG
CAGTGTAGTCTACGAGTACGTATCCATGGAGAAGTGCGCGCCGAGTGCGC
TTGTCGTGGTCTCTAGGCCCGAGCCCGCGCCAACCGACTGTAGTCTGGCC
ACGGAGGGACGCGCCGCCCGCCGACCGCGCGTCGGGCGCGAAGCAACGTC
GCTATACAGCTGTGTCCATCCAACCCATCGATCGTTCTGCTGCTGTGTGC
TGTCGTGGATAACATCTTGAATTTAGAGAGACATTCCATTTTTCGATTTG
AAAATCTGATGACCCAAGTCGTCGGATTTTGCTGATGACCCAAGTCGTCG
GATTTTGCTGATGACCCAAGTCGTCGGATTTTGGGCCAAAATCCGATGAC
TGGGTCGTCGGATTCTCAAATGGAAAAAGTTCCGGTCGGATTTTGCATTT
TTGGACTGTCTGCGCAGGGTCATGCATTTTTTAGATGGAAAAATAAAAAT
CTGAAGCTCGAAATCGAACCGCATAGGAAACAGCCTTATCGTCTACGACT
GCTGTCTCTAATTGTTACAAGTACAACAATACTGGTTGACAGTTCGACAA
CTGGACTGCAGGTACAGGACTTCTGGGGTGGTGCGCACGTACCGTATGAA
CTAAGAGTAAGACAAGAGCCTCTCAACCAGAACCAAAAAATAGGAGCAGG
AAAAGAGAACAACATCAATGAGTGCTCTGTGGGATGCTTTTTGCTGCGAC
CTGTGTCCTGTGTCATGCGTGCTGCTGTACTTTTCAAGGGTTTCTACTCT
CTAGATGCATTTCTATACCGGGGATAGACGATGCATTTTTTTGCGGCGGA
CTTCGACTGCGTGAAGTTACGCGTAACGCTGTAACCGTCATATCCCTACT
CAAACGTGCCCCAAGCGACGATGGGACGTACTAGTTAAACTGGTCATGTA
TGTACCTGGTATACCATAGCAGGTACCTGGTGCCAGGTATCAAAAACATA
TACCAGGTAGACCAGTATAGTAGTGGTATCTGCTGGTGCGCAACGAGTCT
TCGCGATATTGCGACTGGATTGTGCAATTTTGTTTTTCCAACAGGCGACC
ATCCAATTTACGGTCATATATTCACGGCACCAGAGTGCCTGCCTGACCGT
TACGTGAAATTGTTTCCATGACCCACGTGCGGGTGCGGGCGGTCCTGTCC
GAGTTTCGAGTTCGGGCTGGTATCTTGAGACTTTTTGGGAGATGAGGCCA
GGCAAACCAGCTATCACGAGAAAAACTCCTTGGAATTGCGAGTAGTATGG
TCAGTAGCACAAGATGAGACCATATTCGAGATGAACTATTTTGGCTTGTC
GCCGGTTGGTGTTGGAATTTGAATTGGTAGGAGTACCCAATGGCTTTAGT
CCAAGGGTCATGGTGCGTTTCATGTAAACCTAAACCATGCTGTTCATCAC
TACCCCTGCGCTCGTCGCACGTCGGCACCTTGTAAATCAGACTATTAAAG
GTTTCGAGGCCAAACCTCTTGTACCTGTCGTGGCCTTGCCGCTGTCATGT
GGGAACACCGCTGCCGCCGTGTGCCGTGTGTGATGGGCCGACTACTACTC
TGTTGTGCGGAATCACTGGTGTTTGTTGTGGTTGTTCTCACATTAACTCA
TGTCCAAAACGTCGAATCCGTGCTTGTGATGGATTGGTTCTGACTGAACA
TCACCCTGCGACGTAGAACGGAAGCGTAACATCCCCGCTCACGCAAATCT
GTACCAGGTCCTACGGAAACATACGACTCTATCAGGAAGTTTAAGGACCG
TTGGATTGCAGTTGATGAGTCTGTTTTTTACACGGTAGCGGCTCTGGTTT
CAGCATATACCAGCATTGCACGGCTACAATTATATTTTGACATGCGCATG
ATGTTGCTGTTGAGGCGGTGACTCCCGTGTCTTTTCAGACACACCGGACA
GGTGACTGTCTACGTAGACCATCCAGACCATATTTTTGCCGGTGCGACAT
GCCACGCAAGAGCTTTTAACATCGAACTGGGCCAGCCAAAACTTTGTCGG
AATGGTTGATTGGCCGTCCATGCCGCGCCCAATTTTACGCATTTGGACGT
GATTTTTTGACAGGGTGTCGTTGCCTGTAGTTTGTGCGGTACAGATCCCA
CCACAGCAACCACATGCGTAAGGGCCGTGACGTACAGACCCCACCCGGCG
AACATGACCTATTGCAGGTCGTGTAGATCATACATGAAGAGTGGAAACCT
GTCTCCCCAGAAGATTTAGATCTTGAAAAGGGCATCTGACCCGCCTGGTG
TCTGTTTTAGGTACTGCAATATGTTTCGTGGTGCCTTATGGTCGACCGTT
GTGCTATATAATTGGCGACGGCGTGTACCCCCGTCGGCCGGCCTGTCCGG
CTCGTCTCTCTTGCTGTCGGCAACAACGCCAGATTCAAGTGTGTCCGTGA
AGGGGTTCACATTATCCGAGAAGCAAGATATTGGACAACGAGATGCGTTT
ACTGTGGTTTTACCTTTCTTCAGTCGCCTCTTGGTGACTGCGGAACGCAA
GATCGCAGCAGTGTCGATCCTGTCGGTTTCCGCCTTCAGTTAGATCGCGG
GCGTGCCGTGGTGCTGTCTTGACTTACCAGTTCTGCATCAGATAGAAGCC
GAAAGGCACCCAGTCTCCGGCAGCCCGCGATGGTTTCGAATGTCGGGCAG
ATCACCGATCCCCATTATATGGTGAAGATATATGTATTTTCAAGGCAGAT
ATATCCCCAGTATTCAGGACCTAAAGCAGTGACTCACGTTGCCAAGTGGG
AGCCGTGTAGTCTGAATGATCTAGCACATGCTTCCTGAGATGGATATGTA
CTACACAGATCTTGGACAACATCTCACAGCGGCAGGTTAGGATTTTGGTG
ATGTACTGTAGATATATAGATCATGATCTGTCGGATGTGTGGAGGGATTG
GAGTGAAGTCCCCAAGTACGCTCGTACTACGGCAGGATACATGTAGCTCA
TATCACAGCAGTCCACGCAAGCGATTTGGAACGCCGGCGAGAGAAGCGAC
GTACGTCAAACGCTCTGAGCTTGAGCTTTGGTTCCAGCTGCGATCGACAC
CGGTCCGTGACATGCTTTGTATGTTGGTTTTGTACTCGGACAGTTTATAC
ATTGCAGATCTTGTGGCAGATACACATTAGCTTTCAGATCGAGAATTTCG
TCGATTTGATTAATGACGAAAGCAAAAGCATGCGAGTAATATGTACCTGG
TAATAAATACGGGTAAAATCATCGAGAGTTTGGTTTTGCTTTCTTCTCTA
TTGACACTCTTTCCCTTACGACTTGCACTTCGTCTTTTTCCAACAGACCG
CTCGTAAGTCCACCGGTGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAG
GCCGCCCGCAAATCCGCACCTACGGCAGGTGGCGTGAAGAAGCCCCACAG
GTGTGTAAATTGGGTTTTTCTACTGCTGTATCTCGGTCGACACCATGTTT
TTCCTTGTCGATGCTCGTCACATTTACTTTTCCTTCTCGTACGAACATTA
CCGTTCTCATCCTTTCCTTCTTCTAGGTGATATTTATTTTATATGATACC
TGGTACCTGATATTTGAACAAGGGTATCACTCATCATCGCTATTCATCCC
GACGCTAAGTTTTGGGAAGTCACTGGCCTACCAGTATGCCGTGTCGAACG
AATCCAGCAGGGTTTTGCCTTTTGAGGTAGAATGTTGGAAATACAGCGGT
CGCTTACAGTCAAGAGAGGTGTAATGGCAATTCTAAAACCGTACTATCTT
GCCCTGTCCAGCTGATTTTTTATTCGGAATTCTGGTAACACTGCAGAATC
ACATGTGCGTTCCTTAAGGGTTCGTTTTACTTTTTGGCACAAAACCTGCC
GTTTTTCACGTCGCATGGGATATTTATATATGCTCCTGCATTTTTTTTGC
ATGGGCGCTTCGGCTGCTACTTACTGCTTGTCGCTTGTGGAGACTTATCC
TCCTTCGCCTCCCTCGATTGGCCGTTCTGGGTGTATCCGATTTCTTTTAC
GTACCACAGGTACAGGCCCGGCACGGTTGCGCTGCGTGAAATCCGCCGCT
ACCAGAAGTCCACGGAGCTCCTCATCCGTAAGCTCCCCTTCCAGCGCCTG
GTGCGCGAGATCGCCCAGGACTTCAAGACCGACCTTCGCTTCCAGAGCAC
GGCAATCCTCGCCCTGCAGGAGGCCGCTGAGGCTTACCTGGTAAGACCAT
AGTAAAAGCATCATGTCCATATGACGCGACATTTGCCTTTTTTGGGGTGC
AAGGCTGGCTGTACGGGAATGCGGGAGGGTATCAGTGTTGAGAGATAGCC
AGGATGGCAGGTCGGGGGACGAGCATGCGGTTCGTTTGGACCTGCTGCCA
GGCCTTACTCGGGCGAGGGGCAAGGTTTAGATTGTTCTGATTGTAGCCAC
GGGTTGGTCTGGTTGTATCCACACCCGGAAGTTCAACGCGCGAACTATTA
ATACTACAGTCGCGCCCTGTTTTGGCAGGCATTACCTGGTACGTTTTATG
CTTCTTTTTGTTCGTGCATGGGGCCAGCCGTCGCACAGTCATGCCACAAG
ATCGTGTGATCCACCGCTGCTCTTGTCGTTTGTCGTGATGTTTGGCAATC
GATGGCTAAAGAATGCTTGCCCCCAACTTGCTCCCCCATGCGCGGATTTT
TTGTCCTCAGGTCGGCCTGTTCGAAGACACGAACCTGTGTGCCATCCACG
CGAAGCGCGTGACCATCATGCCTAAGGACATCCAGCTCGCTCGCCGTATC
CGCGGAGAGAGGGCATGAGCGACTCGCCAGCATGCGCCCCACAAGATGAC
GACAGCGGCAATGAAGACTGCTCATGTGTTGGATGTTTTTTCGGGCACAG
GGAAGAAAGGAGCCGTAGTGTTTTTCTTGGTCCAGTGTTGTATATTCGTG
GCGCAGCACAGTAATAGTTGGGGACTCTTAAATTTTGTGCAAAAACATTG
TGTGCACGGTCGGCGGCGAGAACCGGAGTAGGCGGTATGCGGCGTCGCAG
AAAAGTAAGCCTCGCCGAAAGCATTAAATGGCAGCAGTGGGCCATAGCTT
GTCGAGATCTATTTTAGCGGTAAGCAGCAGTCACGTACGTGGTGTTTTGA
TGTTGGCGCTTTCTTTGTTTTCGCTGCGCGGAAGGGAAGGCTGATGGATG
ATGAACGAAGGTGCAAGACTGGCCGCGCTTGCTTGCCAGCTAGGCAGGAG
GAATTGGATTGCCGTGTTTCGATTGCTCTTTCTGTCGTGTCGGCTCTTAA
GTATTTTTCTTTGTGTGTGTTGTGTAAGGCAATTGTACAGCAGGGAGGCC
CACAGCAGCCGTAGACCGAATCTTGCACGAGTATTGCCAAGCGGCGGAAA
GAAGGTGGAGGAACAAGAGTTGCTTGTTTTGTTTGTCGGCGAGAAGAATG
AGAAAGCCGCTCTGACTCCAACGACAACAACGTGTTTTTAGGAGCCGCAT
TCAACCCCCCCCATACATAGTAGTAGTAGATACTCACTCAATTTTTGCTA
CCCGCTATACTGCTGTATCTTTACCGATTGCCGATTGTGATGCTCGCAGC
GGACCCATTGTATGGTAGCGATGGTGTGAGGCTTTTCTGTGTTCTCTGAA
GCGCTCATGGCTTCCCATCAAAGACCGCTTGAAGGCTGAAGACCGCTGTA
AGACTGACTTGACTGTGACTCAACTCATCAACTATGATCCTGCTGTTCAA
CTGGCTCTCCTGCTTTTTGTAGCCAGAATACAGGGAACATGAATCAATCA
ACGAACGAGCGAATGACGATTACGCGCGTGGTCGTACTACTACACAACAG
TTGTACAGCAGTAGGTATTACTATTAATATTAATGTTGATTCTGCTGTAG
TTTTTGACGTCTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11420:648..8211+

>mRNA_M-pyrifera_M_contig11420.2958.1 ID=mRNA_M-pyrifera_M_contig11420.2958.1|Name=mRNA_M-pyrifera_M_contig11420.2958.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig11420:648..8211+ (Macrocystis pyrifera P11B4 male)
ATGGCCCGCACGAAGCAGATGGCCCGCACGAAGCAGACCGCTCGTAAGTC
CACCGGTGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCCGCCCGCA
AATCCGCACCTACGGCAGGTGGCGTGAAGAAGCCCCACAGACCGCTCGTA
AGTCCACCGGTGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCCGCC
CGCAAATCCGCACCTACGGCAGGTGGCGTGAAGAAGCCCCACAGGTACAG
GCCCGGCACGGTTGCGCTGCGTGAAATCCGCCGCTACCAGAAGTCCACGG
AGCTCCTCATCCGTAAGCTCCCCTTCCAGCGCCTGGTGCGCGAGATCGCC
CAGGACTTCAAGACCGACCTTCGCTTCCAGAGCACGGCAATCCTCGCCCT
GCAGGAGGCCGCTGAGGCTTACCTGGTACAGGCCCGGCACGGTTGCGCTG
CGTGAAATCCGCCGCTACCAGAAGTCCACGGAGCTCCTCATCCGTAAGCT
CCCCTTCCAGCGCCTGGTGCGCGAGATCGCCCAGGACTTCAAGACCGACC
TTCGCTTCCAGAGCACGGCAATCCTCGCCCTGCAGGAGGCCGCTGAGGCT
TACCTGGTCGGCCTGTTCGAAGACACGAACCTGTGTGCCATCCACGCGAA
GCGCGTGACCATCATGCCTAAGGACATCCAGCTCGCTCGCCGTATCCGCG
GAGAGAGGGCATGAGTCGGCCTGTTCGAAGACACGAACCTGTGTGCCATC
CACGCGAAGCGCGTGACCATCATGCCTAAGGACATCCAGCTCGCTCGCCG
TATCCGCGGAGAGAGGGCATGA
back to top