mRNA_M-pyrifera_M_contig114162.2950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114162.2950.1
Unique NamemRNA_M-pyrifera_M_contig114162.2950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: E2A3F8_CAMFO (Breast cancer type 2 susceptibility protein-like protein n=3 Tax=Camponotus floridanus TaxID=104421 RepID=E2A3F8_CAMFO)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-7
Identity = 44/140 (31.43%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 MFSTAGGRQLSVSAGALERAKALLQADGDVEMEELHDGE-----GEKEQRSDVTESLFATAGGRKLTVSKAAVARAQSLLGD-DDREADEKSSATEEATISAGLKGVKRKASGSEASGFSMFSTAGGRALRVSEKALKQA 402
            +FSTA G  +S+S  +L +AK LL+ + + E + + + E     G   + ++VT SLF+TAGG+ + +SK ++ +A+ LL D  ++E D     ++++ I             ++ +  ++FSTA G+A+ +SEK+L +A
Sbjct:  442 LFSTASGNTISISEKSLAKAKMLLEDESEKENDIIKNYEKSFTGGNSTKSNNVTSSLFSTAGGKPINISKTSLTKAKILLADTSEKENDILIKYSDKSFIDG---------DSTKPNNMTLFSTAAGKAINISEKSLAKA 572          
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: UPI0011443744 (breast cancer type 2 susceptibility protein homolog isoform X1 n=4 Tax=Formica exsecta TaxID=72781 RepID=UPI0011443744)

HSP 1 Score: 57.0 bits (136), Expect = 8.810e-7
Identity = 45/144 (31.25%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 MFSTAGGRQLSVSAGALERAKALLQADGDVEME------ELHDGEGEKEQRSDVTESLFATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAGLKGVKRKASGSEASG----FSMFSTAGGRALRVSEKALKQA 402
            +FSTAGG+ +S+S  +L +AK LL  + + E E      E    +    +  ++T  LF+TAGG+ + +S+ ++A+A+ LL D+  +  +K            L     ++S  E S       +FSTAGG+++ +SEK+L +A
Sbjct:  446 LFSTAGGKPISISEKSLSKAKMLLADESEKENEILIKCPEKSFTDANSVKPDNITLPLFSTAGGKSINISEKSLAKAKRLLADESEKDSDK------------LIKYSERSSTDENSAKNITLPLFSTAGGKSINISEKSLAKA 577          
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: UPI0010FB46C2 (breast cancer type 2 susceptibility protein homolog n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB46C2)

HSP 1 Score: 55.8 bits (133), Expect = 2.240e-6
Identity = 41/140 (29.29%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 MFSTAGGRQLSVSAGALERAKALLQADGD------VEMEELHDGEGEKEQRSDVTESLFATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAGLKGVKRKASGSEASGFSMFSTAGGRALRVSEKALKQA 402
            +FSTAGG+ +++S  +L +AK LL  + +      ++  E    +    + +++T +LF+TAGG+ + +S+ ++A+A+ LL D++++ D      E++        +    S +  S  ++FSTAGG+ + +SEK+L +A
Sbjct:  742 LFSTAGGKSINISEKSLAKAKKLLADEAENKNDMLIKYPEKSFTDVNSMESNNMTSTLFSTAGGKSINISEKSLAKAKKLLADEEKKNDISIKYPEKSFTD-----INSMESNNMTS--TLFSTAGGKPINISEKSLAKA 874          
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: A0A2G8JP18_STIJA (Putative breast cancer type 2 susceptibility protein-like (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JP18_STIJA)

HSP 1 Score: 53.1 bits (126), Expect = 1.820e-5
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    4 FSTAGGRQLSVSAGALERAKALLQADGDV-EMEELHDGEGEKEQRSDVTESLFATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAG--LKGVKRKAS----GSEASGFSMFSTAGGRALRVSEKALKQA 402
            F TA G  + VS  ALE+AK L   +G + E +E         +R +   S FATA G K+T+S  ++ RA+ +L D D+E      + +   +SAG  L G  RK      G  A+G   F T  G+A+ +SE ALKQA
Sbjct:  282 FQTASGSHVKVSEAALEKAKRLWDDEGSIKESDERTGNPSSSHERLERCPSGFATASGGKVTISSTSLERAKDILTDGDKEMQMGQGSRK---LSAGQHLCGTSRKEDCPDVGRIATGG--FLTGKGKAVAISELALKQA 416          
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: A0A4W4F401_ELEEL (Breast cancer type 2 susceptibility protein-like n=5 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4F401_ELEEL)

HSP 1 Score: 52.4 bits (124), Expect = 3.620e-5
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    4 FSTAGGRQLSVSAGALERAKALLQADGDV----EMEELHDGEGEKEQRSDVTESL--FATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAGL-KGVKRKASGSEASGFSMFSTAGGRALRVSEKALKQ 399
            FSTA G+ +SVSA AL+RAKA+L    D     +  E+ + +   E+RS +      F+TA G+K+ VS  A+ +A+SL  + +          E + +  GL K  +  A+  E +    FSTA G+++ VSEKAL +
Sbjct: 1047 FSTANGKTVSVSAEALQRAKAVLADSADTSPCEKRMEISEEKNVPEKRSTIPGRSWNFSTASGKKVAVSDKALRKAKSLFSECE---------VEGSLLDEGLSKTAETSATEPECARCLGFSTASGKSVAVSEKALME 1176          
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: A0A3B1J8R5_ASTMX (BRCA2 DNA repair associated n=5 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J8R5_ASTMX)

HSP 1 Score: 51.6 bits (122), Expect = 6.740e-5
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    4 FSTAGGRQLSVSAGALERAKALLQADGDVEMEELHDGEGEKEQRSDVTE--------SL-FATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAGLKGVKRKASGSEASGFSMFSTAGGRALRVSEKALKQA 402
            FSTA G+ +SVSA AL++AKA+L         E+     E++ +  V +        SL F+TA GRK+ +S  A+ +A++L  + + E        + A   + L   + K  GSE +    FSTA G+ + VSEK LK+A
Sbjct: 1205 FSTASGKMVSVSAEALQKAKAVLDDSSAASPCEIKADVSEEKNKKGVPKTDTYIPGRSLGFSTASGRKVAISDRALEKAKNLFTEVEVE--------DLANNGSILNSAQTKPLGSEQTRCLGFSTASGKGVAVSEKTLKEA 1338          
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Match: A0A0J7NXY3_LASNI (Breast cancer type 2 susceptibility protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NXY3_LASNI)

HSP 1 Score: 51.2 bits (121), Expect = 8.970e-5
Identity = 43/140 (30.71%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    1 MFSTAGGRQLSVSAGALERAKALL----QADGD--VEMEELHDGEGEKEQRSDVTESLFATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAGLKGVKRKASGSEASGFSMFSTAGGRALRVSEKALKQA 402
            +FSTA G  ++VS  AL +AK LL    + D D  ++  E    +G   + +++T  LF+TAGG+ + +S+ ++A+A+ LL D+  + ++ S    + + +  +   K+          S+FSTA G+ + +SEK+L +A
Sbjct:  397 LFSTASGAPINVSKEALSKAKTLLADESEKDNDKLIKYSERSSIDGNSMKPNNITLPLFSTAGGKPINISEKSLAKAKMLLADESEKENDISIKYPQKSFT-DVNTTKQNDMT-----LSLFSTAAGKPVNISEKSLAKA 530          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114162.2950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
E2A3F8_CAMFO1.880e-731.43Breast cancer type 2 susceptibility protein-like p... [more]
UPI00114437448.810e-731.25breast cancer type 2 susceptibility protein homolo... [more]
UPI0010FB46C22.240e-629.29breast cancer type 2 susceptibility protein homolo... [more]
A0A2G8JP18_STIJA1.820e-537.14Putative breast cancer type 2 susceptibility prote... [more]
A0A4W4F401_ELEEL3.620e-535.25Breast cancer type 2 susceptibility protein-like n... [more]
A0A3B1J8R5_ASTMX6.740e-534.51BRCA2 DNA repair associated n=5 Tax=Astyanax mexic... [more]
A0A0J7NXY3_LASNI8.970e-530.71Breast cancer type 2 susceptibility protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114162contigM-pyrifera_M_contig114162:55..456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.166553-CDS-M-pyrifera_M_contig114162:54..4561622815657.166553-CDS-M-pyrifera_M_contig114162:54..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114162 55..456 -
1692277507.9296813-CDS-M-pyrifera_M_contig114162:54..4561692277507.9296813-CDS-M-pyrifera_M_contig114162:54..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114162 55..456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114162.2950.1prot_M-pyrifera_M_contig114162.2950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114162 55..456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114162.2950.1

>prot_M-pyrifera_M_contig114162.2950.1 ID=prot_M-pyrifera_M_contig114162.2950.1|Name=mRNA_M-pyrifera_M_contig114162.2950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MFSTAGGRQLSVSAGALERAKALLQADGDVEMEELHDGEGEKEQRSDVTE
SLFATAGGRKLTVSKAAVARAQSLLGDDDREADEKSSATEEATISAGLKG
VKRKASGSEASGFSMFSTAGGRALRVSEKALKQA
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mRNA from alignment at M-pyrifera_M_contig114162:55..456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114162.2950.1 ID=mRNA_M-pyrifera_M_contig114162.2950.1|Name=mRNA_M-pyrifera_M_contig114162.2950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig114162:55..456- (Macrocystis pyrifera P11B4 male)
ATGTTCTCTACGGCAGGTGGGCGGCAGCTCTCTGTTAGTGCTGGGGCGTT GGAGCGTGCGAAGGCTCTACTGCAGGCCGACGGCGATGTGGAGATGGAGG AGCTGCACGACGGCGAAGGGGAGAAAGAGCAACGCAGCGATGTTACAGAG AGTCTCTTTGCCACTGCTGGCGGCAGAAAGCTCACTGTCAGCAAGGCAGC GGTAGCGAGGGCACAGTCGCTCCTTGGCGACGACGATAGAGAGGCCGACG AGAAGAGCAGCGCCACCGAGGAGGCCACCATCTCTGCTGGCCTGAAGGGT GTAAAGAGAAAGGCTTCTGGGAGTGAGGCATCTGGCTTCTCGATGTTCTC CACTGCTGGAGGGCGGGCCCTGCGTGTCAGCGAGAAGGCCCTCAAACAGG CT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114162:55..456-

>mRNA_M-pyrifera_M_contig114162.2950.1 ID=mRNA_M-pyrifera_M_contig114162.2950.1|Name=mRNA_M-pyrifera_M_contig114162.2950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig114162:55..456- (Macrocystis pyrifera P11B4 male)
ATGTTCTCTACGGCAGGTGGGCGGCAGCTCTCTGTTAGTGCTGGGGCGTT
GGAGCGTGCGAAGGCTCTACTGCAGGCCGACGGCGATGTGGAGATGGAGG
AGCTGCACGACGGCGAAGGGGAGAAAGAGCAACGCAGCGATGTTACAGAG
AGTCTCTTTGCCACTGCTGGCGGCAGAAAGCTCACTGTCAGCAAGGCAGC
GGTAGCGAGGGCACAGTCGCTCCTTGGCGACGACGATAGAGAGGCCGACG
AGAAGAGCAGCGCCACCGAGGAGGCCACCATCTCTGCTGGCCTGAAGGGT
GTAAAGAGAAAGGCTTCTGGGAGTGAGGCATCTGGCTTCTCGATGTTCTC
CACTGCTGGAGGGCGGGCCCTGCGTGTCAGCGAGAAGGCCCTCAAACAGG
CTATGTTCTCTACGGCAGGTGGGCGGCAGCTCTCTGTTAGTGCTGGGGCG
TTGGAGCGTGCGAAGGCTCTACTGCAGGCCGACGGCGATGTGGAGATGGA
GGAGCTGCACGACGGCGAAGGGGAGAAAGAGCAACGCAGCGATGTTACAG
AGAGTCTCTTTGCCACTGCTGGCGGCAGAAAGCTCACTGTCAGCAAGGCA
GCGGTAGCGAGGGCACAGTCGCTCCTTGGCGACGACGATAGAGAGGCCGA
CGAGAAGAGCAGCGCCACCGAGGAGGCCACCATCTCTGCTGGCCTGAAGG
GTGTAAAGAGAAAGGCTTCTGGGAGTGAGGCATCTGGCTTCTCGATGTTC
TCCACTGCTGGAGGGCGGGCCCTGCGTGTCAGCGAGAAGGCCCTCAAACA
GGCT
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