mRNA_M-pyrifera_M_contig114153.2947.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114153.2947.1
Unique NamemRNA_M-pyrifera_M_contig114153.2947.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: F1A4B5_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A4B5_DICPU)

HSP 1 Score: 108 bits (271), Expect = 7.640e-25
Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMAAK 420
            L+SPK+ + +F NI  + +++  +L ++E+          +G  FL +S  L +Y+ YCS+   A +L+E+    + A R FLD   + P  +GL L +F+IKP+QRICKYPL ++E+I+ +P DHPD A +    K
Sbjct: 1224 LLSPKDIQTLFSNIEILISVNSNVLKELEKHQDPTYENVNIGKAFLDMSHYLKMYTAYCSHQEAALKLLEEEKLKNPAFREFLDSCMNDPRCRGLPLNSFIIKPVQRICKYPLLIKEVIRFTPDDHPDRAPLEEVDK 1360          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: UPI00064492ED (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064492ED)

HSP 1 Score: 107 bits (268), Expect = 1.880e-24
Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            L+  K+  LIF NI  + N+++VLL+D+E+ +++      +G CF  L+  L +YS YC+N   +   +++ +  S   + FLD   + PE +   L +FLIKPIQR+CKYPL LRELIK S   HPD+ ++  A
Sbjct:  368 LLVDKDFSLIFSNIQMLMNVNEVLLADLEK-MAKANEGMSVGPCFKYLAGYLKIYSSYCANQQVSHDHLQQCIKKSPVFKQFLDEKQAMPECRQNHLDSFLIKPIQRLCKYPLLLRELIKNSDPAHPDIPSLEEA 501          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: A0A7S4MN16_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MN16_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 2.820e-24
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLI------------EKLLASSKALR---SFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            +++ K++ +IF NI  + NL+      +  +  +   EQ +G+CFL + + L +YSEYCSN   A + +            E    S + +    SF DY  ++PE + L L +FLIKP+QR+CKYPL LRE+IK + + HPD A++  A
Sbjct:  106 ILTKKQNRIIFSNIELLFNLNVRFYESLSNEAKKEDEEQMIGNCFLQVGQFLKMYSEYCSNQTTALRYVSLARGVKEPTPNESFDMSREQISEFSSFCDYTQTRPESRKLDLPSFLIKPVQRVCKYPLLLREMIKSTDESHPDHASLQQA 255          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: A0A507FFF5_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FFF5_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 4.880e-24
Identity = 53/139 (38.13%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    4 ATLISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSR--PTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            A ++ PK+  +IF N+ AI N+++ LL  +EE+ ++      +++GD F+ ++  L +Y+ YCSNHP A   ++ +   +K++   LD   + PE + L L  FL+KP+QRICKYPL +RE IKC+ + HPD   ++ A
Sbjct:  439 AKVLRPKDVAVIFSNLEAILNVNKELLMRLEERQAKHGDGVIEQVGDIFIGVTDYLKMYNMYCSNHPYALMKLQAV-RQTKSVAKLLDSLKALPECRNLDLSNFLLKPVQRICKYPLLVREAIKCTDKTHPDFENLTKA 576          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: A0A0L0HU94_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HU94_SPIPD)

HSP 1 Score: 106 bits (264), Expect = 6.550e-24
Identity = 49/135 (36.30%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            L+ PK+  ++F N+  +  ++Q L+  +E++ S+    +++GD F+ +S  L +Y+ YC NHP A   ++ +   +K++  FLD     PE + L L  FLIKP+QRICKYPL +RE++K +   HPD   +  A
Sbjct:  323 LLPPKDMAIVFSNVEQLLPVNQQLMKWLEDRTSQHPVVEQIGDIFIRVSDFLKMYTMYCRNHPFALMKLQAV-RQNKSVAKFLDQCAMMPESRNLNLANFLIKPVQRICKYPLLIREVMKNTEPSHPDFQNLEKA 456          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: F0ZC52_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZC52_DICPU)

HSP 1 Score: 105 bits (262), Expect = 1.210e-23
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            +I+ K+   IF NI ++ N+++ LLSD+         E  +G  F+     L +YS YC+N   ++  I +      A + FL+   + PE +   L++FLIKP+QR+CKYPL LRELIK SP DHPDL  +  A
Sbjct:  392 IITEKDISTIFSNIQSLLNVNKELLSDLIRVAPDEKPESTIGIRFIFFFNYLKIYSSYCANQTISSDHIVRCSKKIPAFKQFLEEKQASPECRQCNLESFLIKPVQRLCKYPLLLRELIKNSPPDHPDLENLETA 526          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: A0A507CK92_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CK92_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 1.230e-23
Identity = 53/128 (41.41%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPD 393
            L+ PK+  +IF NI  +  ++Q LL  +EE+ ++     ++GD F+ +   + +Y+ YCSN+P A   ++ L   SKA++ FLD   + PE + L L  +LIKP+QRICKYPL LRELIK +  ++PD
Sbjct:  360 LLRPKDLAVIFSNIEMLLPMNQELLKLLEERQAQNHVVDRVGDIFIRVCDYMKMYTMYCSNYPYALVKLQAL-RHSKAVQKFLDQCQAMPESRHLNLATYLIKPVQRICKYPLLLRELIKSTDPENPD 486          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: Q1ZXN6_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q1ZXN6_DICDI)

HSP 1 Score: 104 bits (260), Expect = 2.270e-23
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            +I  K+  +IF NI  + N+++ LLSD+ ++         +G CF+   K L +YS YC+N   +A  I +      + + FL+   +  E +   L++FLIKP+QR+CKYPL LRELIK S + HPDLA +  A
Sbjct:  490 IIPDKDISIIFSNIQLLLNVNKELLSDLLQKAPDEKPNHTVGTCFIYFFKYLKIYSGYCANQTISADHIARCSKKIPSFKQFLEEKQASTECRQCNLESFLIKPVQRLCKYPLLLRELIKNSCEGHPDLANLEKA 624          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: A0A177WYZ4_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WYZ4_BATDL)

HSP 1 Score: 104 bits (259), Expect = 3.100e-23
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPD 393
            LI  K+  +IF NI  +  ++  LL  + ++       + +GD F+ +S  L +Y+ YCSNHP A   ++ +   +K++  FLD    QPE + L L  FL+KP+QR+CKYPLFLRELIK +  DH D
Sbjct:  431 LIRSKDMAIIFSNIEQLLPVNMELLKSLVKRQETNKVIEYVGDAFIRVSDYLKMYTMYCSNHPYALIKLQSV-RQNKSVAKFLDQCAQQPECRNLNLANFLLKPVQRVCKYPLFLRELIKATEPDHVD 557          
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Match: A0A507CJM4_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CJM4_9FUNG)

HSP 1 Score: 104 bits (259), Expect = 3.210e-23
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 LISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLLLSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGLQAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMA 414
            LIS K  E +F N+  + +++Q LL  +EE+ +      KLGD F+ + +  ++Y+ YC N   A   ++  + S+KA+R+FL+     P L+ L L  FLIKP+QR+CKYPL L+E++K +P+   D A + +A
Sbjct:  596 LISAKNVEAVFSNLEQLLSVNQDLLKRLEERRAAYPVIDKLGDIFVSMGEHFLVYTMYCGNQGSALSKMQSTIHSNKAVRAFLEEIYKLPILRNLDLGGFLIKPVQRLCKYPLLLKEIMKYTPETKADYAALKLA 730          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114153.2947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F1A4B5_DICPU7.640e-2537.23Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
UPI00064492ED1.880e-2440.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S4MN16_9EUKA2.820e-2436.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A507FFF5_9FUNG4.880e-2438.13Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A0L0HU94_SPIPD6.550e-2436.30Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
F0ZC52_DICPU1.210e-2339.26Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A507CK92_9FUNG1.230e-2341.41Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
Q1ZXN6_DICDI2.270e-2338.52Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A177WYZ4_BATDL3.100e-2340.63Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A507CJM4_9FUNG3.210e-2337.78Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114153contigM-pyrifera_M_contig114153:22..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue8.2e-22
Seed eggNOG ortholog5786.XP_003294509.1
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005085,GO:0005088,GO:0005089,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0006950,GO:0006970,GO:0006971,GO:0006972,GO:0008092,GO:0008144,GO:0008150,GO:0009628,GO:0009966,GO:0009987,GO:0010646,GO:0015629,GO:0016043,GO:0016459,GO:0016461,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017048,GO:0017076,GO:0017111,GO:0019899,GO:0023051,GO:0030030,GO:0030554,GO:0030676,GO:0031267,GO:0031268,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035020,GO:0035639,GO:0036094,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0046578,GO:0048365,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051020,GO:0051056,GO:0065007,GO:0065009,GO:0071840,GO:0097159,GO:0097367,GO:0098772,GO:0120036,GO:1901265,GO:1901363,GO:1902531
EggNOG free text desc.Myosin. Large ATPases.
EggNOG OGs3XEKG@554915,COG5022@1,KOG0160@2759,KOG3519@1,KOG3519@2759
COG Functional cat.Z
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Exons1
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.9927578-CDS-M-pyrifera_M_contig114153:21..4441622815656.9927578-CDS-M-pyrifera_M_contig114153:21..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114153 22..444 -
1692277507.8397884-CDS-M-pyrifera_M_contig114153:21..4441692277507.8397884-CDS-M-pyrifera_M_contig114153:21..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114153 22..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114153.2947.1prot_M-pyrifera_M_contig114153.2947.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114153 22..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114153.2947.1

>prot_M-pyrifera_M_contig114153.2947.1 ID=prot_M-pyrifera_M_contig114153.2947.1|Name=mRNA_M-pyrifera_M_contig114153.2947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MATLISPKEHELIFGNIVAIRNLHQVLLSDMEEQVSRPTAEQKLGDCFLL
LSKCLVLYSEYCSNHPRAAQLIEKLLASSKALRSFLDYATSQPELKGLGL
QAFLIKPIQRICKYPLFLRELIKCSPQDHPDLATISMAAKV
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mRNA from alignment at M-pyrifera_M_contig114153:22..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114153.2947.1 ID=mRNA_M-pyrifera_M_contig114153.2947.1|Name=mRNA_M-pyrifera_M_contig114153.2947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig114153:22..444- (Macrocystis pyrifera P11B4 male)
ATGGCCACACTCATCTCCCCCAAGGAGCACGAGCTTATCTTTGGAAACAT CGTGGCCATTAGGAACCTCCACCAAGTGCTCCTCTCTGACATGGAGGAGC AGGTGAGCCGTCCCACTGCGGAGCAGAAGCTGGGCGACTGCTTTCTCCTC CTCAGCAAGTGCCTTGTCCTCTATTCTGAGTACTGCTCCAACCACCCAAG GGCTGCACAGCTGATTGAGAAGCTGCTCGCTTCCAGCAAGGCGCTGCGTT CTTTCCTCGACTACGCTACCTCACAGCCAGAGCTGAAGGGCCTGGGCCTC CAGGCGTTCCTCATCAAACCCATCCAGCGCATCTGCAAGTACCCTCTCTT TCTCAGGGAGCTCATCAAGTGCTCTCCCCAGGACCACCCAGACTTGGCCA CCATATCGATGGCAGCTAAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114153:22..444-

>mRNA_M-pyrifera_M_contig114153.2947.1 ID=mRNA_M-pyrifera_M_contig114153.2947.1|Name=mRNA_M-pyrifera_M_contig114153.2947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig114153:22..444- (Macrocystis pyrifera P11B4 male)
ATGGCCACACTCATCTCCCCCAAGGAGCACGAGCTTATCTTTGGAAACAT
CGTGGCCATTAGGAACCTCCACCAAGTGCTCCTCTCTGACATGGAGGAGC
AGGTGAGCCGTCCCACTGCGGAGCAGAAGCTGGGCGACTGCTTTCTCCTC
CTCAGCAAGTGCCTTGTCCTCTATTCTGAGTACTGCTCCAACCACCCAAG
GGCTGCACAGCTGATTGAGAAGCTGCTCGCTTCCAGCAAGGCGCTGCGTT
CTTTCCTCGACTACGCTACCTCACAGCCAGAGCTGAAGGGCCTGGGCCTC
CAGGCGTTCCTCATCAAACCCATCCAGCGCATCTGCAAGTACCCTCTCTT
TCTCAGGGAGCTCATCAAGTGCTCTCCCCAGGACCACCCAGACTTGGCCA
CCATATCGATGGCAGCTAAGGTAATGGCCACACTCATCTCCCCCAAGGAG
CACGAGCTTATCTTTGGAAACATCGTGGCCATTAGGAACCTCCACCAAGT
GCTCCTCTCTGACATGGAGGAGCAGGTGAGCCGTCCCACTGCGGAGCAGA
AGCTGGGCGACTGCTTTCTCCTCCTCAGCAAGTGCCTTGTCCTCTATTCT
GAGTACTGCTCCAACCACCCAAGGGCTGCACAGCTGATTGAGAAGCTGCT
CGCTTCCAGCAAGGCGCTGCGTTCTTTCCTCGACTACGCTACCTCACAGC
CAGAGCTGAAGGGCCTGGGCCTCCAGGCGTTCCTCATCAAACCCATCCAG
CGCATCTGCAAGTACCCTCTCTTTCTCAGGGAGCTCATCAAGTGCTCTCC
CCAGGACCACCCAGACTTGGCCACCATATCGATGGCAGCTAAGGTA
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