mRNA_M-pyrifera_M_contig10141.294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10141.294.1
Unique NamemRNA_M-pyrifera_M_contig10141.294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10141.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10141contigM-pyrifera_M_contig10141:8812..9489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10141.294.1prot_M-pyrifera_M_contig10141.294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10141 9040..9390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.8790693-UTR-M-pyrifera_M_contig10141:8811..90391622815511.8790693-UTR-M-pyrifera_M_contig10141:8811..9039Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10141 8812..9039 +
1692277444.6645286-UTR-M-pyrifera_M_contig10141:8811..90391692277444.6645286-UTR-M-pyrifera_M_contig10141:8811..9039Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10141 8812..9039 +
1622815511.9120657-UTR-M-pyrifera_M_contig10141:9390..94891622815511.9120657-UTR-M-pyrifera_M_contig10141:9390..9489Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10141 9391..9489 +
1692277444.7000449-UTR-M-pyrifera_M_contig10141:9390..94891692277444.7000449-UTR-M-pyrifera_M_contig10141:9390..9489Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10141 9391..9489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.898352-CDS-M-pyrifera_M_contig10141:9039..93901622815511.898352-CDS-M-pyrifera_M_contig10141:9039..9390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10141 9040..9390 +
1692277444.682645-CDS-M-pyrifera_M_contig10141:9039..93901692277444.682645-CDS-M-pyrifera_M_contig10141:9039..9390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10141 9040..9390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10141.294.1

>prot_M-pyrifera_M_contig10141.294.1 ID=prot_M-pyrifera_M_contig10141.294.1|Name=mRNA_M-pyrifera_M_contig10141.294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MSLSRREHPSQVYRSEMPRRNLSQHFLHMNKIYHAAWLRLPCKLKLASES
PIENPRRPTSNKKNVRCSLMTQQNPTHIIYMCVPVADCRRRLIVCTGTPS
SRVLSRKPLRHAPVLV*
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mRNA from alignment at M-pyrifera_M_contig10141:8812..9489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10141.294.1 ID=mRNA_M-pyrifera_M_contig10141.294.1|Name=mRNA_M-pyrifera_M_contig10141.294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig10141:8812..9489+ (Macrocystis pyrifera P11B4 male)
TCCCTCTTCGTGGGCAGCGTACTTTCTTACTACAGTATTGTCTGACTAGC
ACGTGGCTCTACAATATTAAAACAAAAGGGAGGTGCAAATCTACTCTGCC
TGCTCGACGCAATGGTAAAGCCCTCTCGCTTAGAAATCCCAACGCCGCAC
CAACTTAAATGACCCACAGGTAAAGAGCCGGAGGGCATATGGTGACCGCA
GTTGACCAAAGTCAACAGCGGGCACAGAATGTCTCTCTCACGTCGAGAAC
ACCCCTCGCAGGTGTATAGGTCAGAGATGCCTCGGCGAAACCTCTCACAG
CATTTTCTACACATGAATAAAATTTACCACGCTGCCTGGCTTCGGCTTCC
TTGCAAGCTTAAGCTTGCGTCCGAGTCCCCTATAGAAAATCCCAGACGCC
CTACTTCGAATAAAAAAAATGTGCGCTGCTCGCTGATGACCCAACAAAAT
CCGACGCACATCATATACATGTGTGTGCCGGTCGCCGACTGCCGACGTCG
CTTGATCGTCTGTACGGGCACGCCTTCATCTAGAGTGCTTTCACGAAAGC
CCCTCCGTCATGCACCGGTGTTGGTGTGAATTACAACAAGCATAGTGCGC
TTCATCAGCAGCCGCGATTTATATGAGATGGTCACATCTGGAGGGACACC
GGCGACAATGAGCGTAAAAACGTAAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10141:8812..9489+

>mRNA_M-pyrifera_M_contig10141.294.1 ID=mRNA_M-pyrifera_M_contig10141.294.1|Name=mRNA_M-pyrifera_M_contig10141.294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig10141:8812..9489+ (Macrocystis pyrifera P11B4 male)
ATGTCTCTCTCACGTCGAGAACACCCCTCGCAGGTGTATAGGTCAGAGAT
GCCTCGGCGAAACCTCTCACAGCATTTTCTACACATGAATAAAATTTACC
ACGCTGCCTGGCTTCGGCTTCCTTGCAAGCTTAAGCTTGCGTCCGAGTCC
CCTATAGAAAATCCCAGACGCCCTACTTCGAATAAAAAAAATGTGCGCTG
CTCGCTGATGACCCAACAAAATCCGACGCACATCATATACATGTGTGTGC
CGGTCGCCGACTGCCGACGTCGCTTGATCGTCTGTACGGGCACGCCTTCA
TCTAGAGTGCTTTCACGAAAGCCCCTCCGTCATGCACCGGTGTTGGTGTG
AATGTCTCTCTCACGTCGAGAACACCCCTCGCAGGTGTATAGGTCAGAGA
TGCCTCGGCGAAACCTCTCACAGCATTTTCTACACATGAATAAAATTTAC
CACGCTGCCTGGCTTCGGCTTCCTTGCAAGCTTAAGCTTGCGTCCGAGTC
CCCTATAGAAAATCCCAGACGCCCTACTTCGAATAAAAAAAATGTGCGCT
GCTCGCTGATGACCCAACAAAATCCGACGCACATCATATACATGTGTGTG
CCGGTCGCCGACTGCCGACGTCGCTTGATCGTCTGTACGGGCACGCCTTC
ATCTAGAGTGCTTTCACGAAAGCCCCTCCGTCATGCACCGGTGTTGGTGT
GA
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