mRNA_M-pyrifera_M_contig114113.2939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114113.2939.1
Unique NamemRNA_M-pyrifera_M_contig114113.2939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.370e-15
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 ATRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALAASS 168
            + RRYGASMYR +F  FSE YHRQEVVGAL+TH G+GSE ETD AL+ALSALA+ S
Sbjct:  369 SVRRYGASMYREIFSGFSEAYHRQEVVGALITHCGAGSELETDSALSALSALASPS 424
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: UPI001263CDFE (Fanconi anemia group D2 protein homolog n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263CDFE)

HSP 1 Score: 51.2 bits (121), Expect = 5.470e-6
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
            TR +G  MY  +F EF++ Y RQEV+GAL+TH GSG   E   AL  ++ LA
Sbjct:  425 TREFGIYMYTSLFEEFTDTYSRQEVLGALITHVGSGVSFEVSSALETMALLA 476
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A7S4BLE8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BLE8_CHRCT)

HSP 1 Score: 48.9 bits (115), Expect = 5.990e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    7 RRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTAL 147
            R  G S+YR +F EF+E +HRQE++  ++TH GSG E E D AL AL
Sbjct:    3 RNLGKSVYRILFCEFAEPFHRQELLHQMVTHVGSGLEPEMDSALQAL 49
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A835UL84_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UL84_VANPL)

HSP 1 Score: 50.4 bits (119), Expect = 1.020e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
             R +G  +Y+ +F E  ++Y RQEV+GALLTH GSG + E + AL  L+ LA
Sbjct:  452 VRYFGIHLYKSLFEELKDIYSRQEVLGALLTHIGSGHDQEVNSALETLNLLA 503
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A7S0HN29_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HN29_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-5
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTAL 147
             R+ G S+Y  +  EF E Y RQE++G LLTH GSG+E E D AL  L
Sbjct:  428 ARQLGRSLYVMLLQEFGESYDRQELIGCLLTHVGSGNEPEVDAALQVL 475
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A2R6PKT2_ACTCC (Fanconi anemia group D2 protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PKT2_ACTCC)

HSP 1 Score: 49.3 bits (116), Expect = 2.620e-5
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    7 RRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
            R +G  +YR +F EF + Y RQEV+GAL+TH GSG   E   AL AL  LA
Sbjct:  442 RAFGIHIYRSLFEEFVDTYSRQEVLGALVTHVGSGISFEVSSALEALVLLA 492
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A061DKR3_THECC (Uncharacterized protein n=8 Tax=Byttnerioideae TaxID=214909 RepID=A0A061DKR3_THECC)

HSP 1 Score: 48.9 bits (115), Expect = 3.590e-5
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
             R +G  MY  +F EF++ Y RQEV+GAL+TH GSG ++E   AL  +++LA
Sbjct:  431 ARDFGIYMYTLLFEEFADTYSRQEVLGALVTHVGSGVKSEVSSALQVMASLA 482
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: UPI00084934DF (Fanconi anemia group D2 protein isoform X1 n=6 Tax=Theobroma cacao TaxID=3641 RepID=UPI00084934DF)

HSP 1 Score: 48.9 bits (115), Expect = 3.600e-5
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
             R +G  MY  +F EF++ Y RQEV+GAL+TH GSG ++E   AL  +++LA
Sbjct:  739 ARDFGIYMYTLLFEEFADTYSRQEVLGALVTHVGSGVKSEVSSALQVMASLA 790
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A1R3JQH3_COCAP (Uncharacterized protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3JQH3_COCAP)

HSP 1 Score: 48.5 bits (114), Expect = 4.920e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
             R +G  MY  +F EF++ Y RQEV+GAL+TH GSG  +E   AL  +++LA
Sbjct:  433 ARDFGIYMYTLLFQEFADAYSRQEVLGALVTHVGSGVSSEVSSALQIMASLA 484
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BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Match: A0A5J5BPD2_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BPD2_9ASTE)

HSP 1 Score: 47.8 bits (112), Expect = 9.210e-5
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    4 TRRYGASMYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALA 159
            T ++G  MY  +F EF + Y RQEV+GAL+TH GSG   E   AL  +  LA
Sbjct:  455 TTKFGVHMYMSLFEEFVDTYSRQEVLGALVTHVGSGVSFEVSSALDTMVLLA 506
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114113.2939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G0C8_ECTSI4.370e-1573.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001263CDFE5.470e-650.00Fanconi anemia group D2 protein homolog n=1 Tax=Pi... [more]
A0A7S4BLE8_CHRCT5.990e-653.19Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A835UL84_VANPL1.020e-548.08Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A7S0HN29_9EUKA1.900e-552.08Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A2R6PKT2_ACTCC2.620e-552.94Fanconi anemia group D2 protein n=1 Tax=Actinidia ... [more]
A0A061DKR3_THECC3.590e-548.08Uncharacterized protein n=8 Tax=Byttnerioideae Tax... [more]
UPI00084934DF3.600e-548.08Fanconi anemia group D2 protein isoform X1 n=6 Tax... [more]
A0A1R3JQH3_COCAP4.920e-548.08Uncharacterized protein n=2 Tax=Corchorus TaxID=93... [more]
A0A5J5BPD2_9ASTE9.210e-548.08Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114113contigM-pyrifera_M_contig114113:272..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.2e-09
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size171
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.6307418-UTR-M-pyrifera_M_contig114113:271..2951622815656.6307418-UTR-M-pyrifera_M_contig114113:271..295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114113 272..295 +
1692277507.6783977-UTR-M-pyrifera_M_contig114113:271..2951692277507.6783977-UTR-M-pyrifera_M_contig114113:271..295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114113 272..295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.6438873-CDS-M-pyrifera_M_contig114113:295..4421622815656.6438873-CDS-M-pyrifera_M_contig114113:295..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114113 296..442 +
1692277507.6909893-CDS-M-pyrifera_M_contig114113:295..4421692277507.6909893-CDS-M-pyrifera_M_contig114113:295..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114113 296..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114113.2939.1prot_M-pyrifera_M_contig114113.2939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114113 296..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114113.2939.1

>prot_M-pyrifera_M_contig114113.2939.1 ID=prot_M-pyrifera_M_contig114113.2939.1|Name=mRNA_M-pyrifera_M_contig114113.2939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MYRGMFWEFSELYHRQEVVGALLTHAGSGSETETDCALTALSALAASSS
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mRNA from alignment at M-pyrifera_M_contig114113:272..442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114113.2939.1 ID=mRNA_M-pyrifera_M_contig114113.2939.1|Name=mRNA_M-pyrifera_M_contig114113.2939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig114113:272..442+ (Macrocystis pyrifera P11B4 male)
GCGACGAGGAGGTACGGGGCCAGCATGTACCGCGGAATGTTCTGGGAATT
TTCCGAGCTTTACCACCGCCAGGAGGTGGTGGGTGCCCTTCTGACCCACG
CGGGCTCGGGCTCCGAGACGGAGACCGATTGCGCCCTGACTGCCCTGTCC
GCCCTGGCGGCTTCATCATCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114113:272..442+

>mRNA_M-pyrifera_M_contig114113.2939.1 ID=mRNA_M-pyrifera_M_contig114113.2939.1|Name=mRNA_M-pyrifera_M_contig114113.2939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig114113:272..442+ (Macrocystis pyrifera P11B4 male)
ATGTACCGCGGAATGTTCTGGGAATTTTCCGAGCTTTACCACCGCCAGGA
GGTGGTGGGTGCCCTTCTGACCCACGCGGGCTCGGGCTCCGAGACGGAGA
CCGATTGCGCCCTGACTGCCCTGTCCGCCCTGGCGGCTTCATCATCCATG
TACCGCGGAATGTTCTGGGAATTTTCCGAGCTTTACCACCGCCAGGAGGT
GGTGGGTGCCCTTCTGACCCACGCGGGCTCGGGCTCCGAGACGGAGACCG
ATTGCGCCCTGACTGCCCTGTCCGCCCTGGCGGCTTCATCATCC
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