mRNA_M-pyrifera_M_contig114053.2928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114053.2928.1
Unique NamemRNA_M-pyrifera_M_contig114053.2928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A5A8CUE3_CAFRO (DRIM domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CUE3_CAFRO)

HSP 1 Score: 119 bits (297), Expect = 1.190e-27
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = 1
Query:   37 AMRAAAALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            A+RAA A+L        S  Q++A++ V+  ++    R   AL LL AV++R++++PEVYD MD V    +R  +P++RT++SRL L FL  YP+ D RLR HL FFLRNL+Y    GRLA L  L  +  R P A L      + + +L +L  D    CRAAA A++  L
Sbjct: 3519 AVRAATAVLLHVPTARPSSAQVRAMLSVIRPDLTAPSRQGAALALLRAVVTRRMVAPEVYDAMDDVARMMVRSLQPASRTKASRLFLLFLMNYPLTDARLRAHLAFFLRNLDYSEPHGRLAVLDVLTTVAGRFPVAALDREGPVMFVAVLTKLASDSDPRCRAAAGAMISML 3690          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A6J1SMN0_FRAOC (small subunit processome component 20 homolog n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SMN0_FRAOC)

HSP 1 Score: 105 bits (262), Expect = 5.740e-23
Identity = 63/167 (37.72%), Postives = 98/167 (58.68%), Query Frame = 1
Query:   22 EILTRAMRAAAALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECR 522
            +++  A +A A L++  +  T+S+EQLKAL+   E ++    +H  A  LL A++SRKL+ PE++DVMDKV   +I    P  R ++  +  +FL  YP+  ++L GHL F+L  L Y    GR +AL+ + +++T  P   L+ HS    L L  RLV D + ECR
Sbjct: 2247 DLVVAAFKAVAVLVRDVKYHTLSQEQLKALLLYAEQDLSDANKHATAFALLKAILSRKLVVPEIHDVMDKVATLSITSDLPHVRVQARVVFHQFLMDYPL-GKKLEGHLSFYLSQLNYELQPGRESALEMVNSVITSFPVHVLSNHSGLFFLMLGARLVNDDAPECR 2412          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: I0YZQ7_COCSC (ARM repeat-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZQ7_COCSC)

HSP 1 Score: 101 bits (252), Expect = 1.260e-21
Identity = 65/169 (38.46%), Postives = 96/169 (56.80%), Query Frame = 1
Query:   52 AALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTT--HSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            AALL+S      ++ QL+AL+     +V      V A  LL A+++R+L+  EVY +M +V+   I     S R + S +LL FL  YP+ ++RL  HLDF + NLE+    GR AA+ A++A++ + P   L     +S   LPL+ RLV DPS +CRA     L+AL
Sbjct: 2340 AALLRSCESYKPTQGQLRALLATAFVDVEAAANTVAAFNLLKAILARRLMLEEVYQLMKRVQELMISSHSASVRAQCSAILLMFLLDYPLGEQRLEHHLDFLVANLEFEHESGREAAIDAMIAVIQKFPEEVLVKKDRASAFFLPLVARLVSDPSPKCRALVGRALKAL 2508          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A2P6VR64_9CHLO (Small subunit processome component 20-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VR64_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 1.260e-21
Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  130 EVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            E G G+++  A  LL A+++RKL+ PEVYD+M++V+   +R      R   S  LL+FL  YP+ ++RL+ HL F L N  Y    GR AAL  L  ++T+ P A ++  +  I LPL+ RLV DPS +CRA   A L  L
Sbjct: 2429 EEGAGRQN--AFHLLKAILARKLVMPEVYDLMNRVQELMVRSQAAPVRAACSSALLQFLLDYPLGEKRLQEHLQFLLTNAGYEHESGREAALDMLTVVLTKFPEALVSQWAEMIFLPLVARLVNDPSSKCRAMVGAALAVL 2567          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A8J9REP7_9CHLO (Probable small subunit processome component 20 homolog n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REP7_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 2.300e-21
Identity = 66/167 (39.52%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   52 AALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            AALL+S         QL+ L+     +V      V A  LL AVI+R+L+ PEVYD+M +V+   I+    S R + S +LL FL  YP+   RL  HL+F + N  +    GR AAL A+LA++ + P + L T +    +PL+ RLV DPS +CRA     L+AL
Sbjct: 1779 AALLRSCSSYKPKEGQLRDLLARAFADVEAAANTVAAFNLLKAVIARRLVLPEVYDLMSRVQELMIKSHSASVRAQCSAILLAFLLDYPLGGARLSHHLNFLVANAGFEHEAGRAAALDAMLAVIQKFPDSLLETWAPVFFVPLVARLVSDPSPKCRALVGRTLKAL 1945          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A835W190_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W190_CHLIN)

HSP 1 Score: 100 bits (250), Expect = 2.350e-21
Identity = 64/167 (38.32%), Postives = 97/167 (58.08%), Query Frame = 1
Query:   52 AALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            AALL+     + +  QL+ L++   +++G       +  LL A++ R+++ PEVYDVM++V+   +R    + R+     LL FL  +P+   RL+ H+ F L NLEY    GRLAAL  L  +V + PS  L   S  +L+PL+VRLV D S + RAA+  VLR+L
Sbjct: 2972 AALLRDCAAYSPTTAQLRFLLRWAFEDLGEAGSQPTSFALLRALLGRRVVLPEVYDVMERVQQIMVRSQSAAVRSCCGAALLAFLLDFPLGPARLKAHVGFLLANLEYEYESGRLAALDMLGQVVAKFPSEVLQAQSDLLLMPLVVRLVNDSSSKARAASGDVLRSL 3138          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A2K3DBV4_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DBV4_CHLRE)

HSP 1 Score: 100 bits (250), Expect = 2.350e-21
Identity = 64/167 (38.32%), Postives = 97/167 (58.08%), Query Frame = 1
Query:   52 AALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            AALL+     + +  QL+ L++   +++G       +  LL A++ R+++ PEVYDVM++V+   +R    + R+     LL FL  +P+   RL+ H+ F L NLEY    GRLAAL  L  +V + PS  L   S  +L+PL+VR+V D S + RAAA  VLR+L
Sbjct: 3018 AALLRDCAAYSPTTAQLRFLLRWAFEDLGEAGSQPTSFALLRALLGRRVVLPEVYDVMERVQQIMVRSQSAAVRSCCGAALLAFLLDFPLGPARLKSHVGFLLANLEYEYESGRLAALDMLGQVVAKFPSELLQAQSDLLLMPLVVRMVNDSSSKARAAAGDVLRSL 3184          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: D8LFK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.970e-21
Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   85 VSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            +S +QL+AL+ V++  V   +       L+ AV++R+++ PEVYD+M K+   A+   RP+ R  S +  L FL  YP+ ++RL+ HL+  +  + Y   +GRLAAL     L+ RLP   L   SS   L L+VRLV D + ECRAAAS  +R L
Sbjct:  436 LSPKQLRALLVVLQMAVAETEHQNATFALMKAVVARRVMLPEVYDIMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIVSGVSYEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAGECRAAASTAVRTL 591          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A836B6V6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B6V6_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 3.200e-21
Identity = 64/167 (38.32%), Postives = 97/167 (58.08%), Query Frame = 1
Query:   52 AALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            AALL+     + +  QL+ L++   +++G       +  LL A++ R+++ PEVYDVM++V+   +R    S R+  S  LL FL  +P+   RL+ H+ F L NLEY    GRLA L  L  +V + P+  L   S  +L+PL+VR+V D S + RAAA  VLR+L
Sbjct: 3013 AALLRDCDAYSPTTAQLRFLLRWAFEDLGEAGSQPTSFALLRALLGRRVVLPEVYDVMERVQQIMVRSQSASVRSCCSAALLAFLLDFPLGPARLKQHVGFLLANLEYEYESGRLAVLDMLGQVVAKFPAEVLQAQSDLLLMPLVVRMVNDSSAKARAAAGDVLRSL 3179          
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Match: A0A8J4F954_9CHLO (Uncharacterized protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F954_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 3.890e-21
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   52 AALLQSQRQMTVSREQLKALVQVVEDEVGVGKRHVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLRFLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATLTTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL 552
            AALL+       +  Q++ L++   +++G       A  LL A++SR+++ PEVYDVMD+V+   +R      R      LL+FL  +P+  +RL+ H+ F L NLEY    GRL  L  L  +V + P   L  H+  +L+PL+VRLV D S + RAA   +LRAL
Sbjct:  168 AALLRDCEAYQPTTAQVQYLLRWAFEDLGEAGAQPTAFALLRALLSRRVVVPEVYDVMDRVQQIMVRSQSAPVRNACGVALLQFLLDFPLGPQRLKQHVGFLLANLEYEYESGRLQVLDMLAQVVAKFPVEVLQAHADVLLMPLIVRLVSDTSAKARAATGDLLRAL 334          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114053.2928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CUE3_CAFRO1.190e-2741.28DRIM domain-containing protein n=4 Tax=Cafeteria r... [more]
A0A6J1SMN0_FRAOC5.740e-2337.72small subunit processome component 20 homolog n=1 ... [more]
I0YZQ7_COCSC1.260e-2138.46ARM repeat-containing protein n=1 Tax=Coccomyxa su... [more]
A0A2P6VR64_9CHLO1.260e-2141.84Small subunit processome component 20-like protein... [more]
A0A8J9REP7_9CHLO2.300e-2139.52Probable small subunit processome component 20 hom... [more]
A0A835W190_CHLIN2.350e-2138.32Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A2K3DBV4_CHLRE2.350e-2138.32Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
D8LFK0_ECTSI2.970e-2139.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836B6V6_9CHLO3.200e-2138.32Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A8J4F954_9CHLO3.890e-2137.72Uncharacterized protein n=3 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114053contigM-pyrifera_M_contig114053:8..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.1
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog248742.XP_005648420.1
KEGG koko:K14772
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Small subunit processome component 20 homolog
EggNOG OGs34IYZ@3041,37PER@33090,KOG1823@1,KOG1823@2759
COG Functional cat.V
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.8047254-CDS-M-pyrifera_M_contig114053:7..5591622815655.8047254-CDS-M-pyrifera_M_contig114053:7..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114053 8..559 +
1692277507.2724762-CDS-M-pyrifera_M_contig114053:7..5591692277507.2724762-CDS-M-pyrifera_M_contig114053:7..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114053 8..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114053.2928.1prot_M-pyrifera_M_contig114053.2928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114053 8..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114053.2928.1

>prot_M-pyrifera_M_contig114053.2928.1 ID=prot_M-pyrifera_M_contig114053.2928.1|Name=mRNA_M-pyrifera_M_contig114053.2928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
SSSTTSAEILTRAMRAAAALLQSQRQMTVSREQLKALVQVVEDEVGVGKR
HVVALQLLHAVISRKLLSPEVYDVMDKVRVAAIRDARPSTRTRSSRLLLR
FLTTYPMEDRRLRGHLDFFLRNLEYPTIQGRLAALQALLALVTRLPSATL
TTHSSRILLPLLVRLVQDPSLECRAAASAVLRAL
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mRNA from alignment at M-pyrifera_M_contig114053:8..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114053.2928.1 ID=mRNA_M-pyrifera_M_contig114053.2928.1|Name=mRNA_M-pyrifera_M_contig114053.2928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig114053:8..559+ (Macrocystis pyrifera P11B4 male)
TCTTCTTCCACAACATCTGCGGAAATTCTGACACGTGCTATGCGTGCTGC TGCTGCTTTGCTTCAATCTCAGAGGCAAATGACAGTGAGTCGCGAGCAAT TAAAAGCATTGGTTCAGGTCGTTGAGGATGAAGTTGGGGTGGGGAAGCGA CATGTGGTTGCATTGCAATTGTTGCATGCTGTGATTTCAAGAAAGCTCCT GTCACCTGAAGTCTATGATGTCATGGATAAAGTAAGGGTAGCTGCCATTC GAGATGCACGTCCCTCAACCCGCACCCGTTCTTCTCGACTCCTCTTACGC TTCCTCACTACATATCCAATGGAAGATCGCCGACTTCGAGGTCACTTGGA CTTTTTCCTTCGCAACCTTGAATATCCAACAATTCAAGGTCGATTAGCAG CACTCCAAGCTCTCCTTGCACTTGTCACTCGACTACCCTCCGCCACCCTC ACCACTCATTCCTCTCGCATCCTCCTCCCTCTACTTGTTCGTCTTGTACA AGATCCATCGCTTGAATGTCGAGCTGCTGCTAGTGCTGTGTTACGTGCTC TT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114053:8..559+

>mRNA_M-pyrifera_M_contig114053.2928.1 ID=mRNA_M-pyrifera_M_contig114053.2928.1|Name=mRNA_M-pyrifera_M_contig114053.2928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig114053:8..559+ (Macrocystis pyrifera P11B4 male)
TCTTCTTCCACAACATCTGCGGAAATTCTGACACGTGCTATGCGTGCTGC
TGCTGCTTTGCTTCAATCTCAGAGGCAAATGACAGTGAGTCGCGAGCAAT
TAAAAGCATTGGTTCAGGTCGTTGAGGATGAAGTTGGGGTGGGGAAGCGA
CATGTGGTTGCATTGCAATTGTTGCATGCTGTGATTTCAAGAAAGCTCCT
GTCACCTGAAGTCTATGATGTCATGGATAAAGTAAGGGTAGCTGCCATTC
GAGATGCACGTCCCTCAACCCGCACCCGTTCTTCTCGACTCCTCTTACGC
TTCCTCACTACATATCCAATGGAAGATCGCCGACTTCGAGGTCACTTGGA
CTTTTTCCTTCGCAACCTTGAATATCCAACAATTCAAGGTCGATTAGCAG
CACTCCAAGCTCTCCTTGCACTTGTCACTCGACTACCCTCCGCCACCCTC
ACCACTCATTCCTCTCGCATCCTCCTCCCTCTACTTGTTCGTCTTGTACA
AGATCCATCGCTTGAATGTCGAGCTGCTGCTAGTGCTGTGTTACGTGCTC
TTTCTTCTTCCACAACATCTGCGGAAATTCTGACACGTGCTATGCGTGCT
GCTGCTGCTTTGCTTCAATCTCAGAGGCAAATGACAGTGAGTCGCGAGCA
ATTAAAAGCATTGGTTCAGGTCGTTGAGGATGAAGTTGGGGTGGGGAAGC
GACATGTGGTTGCATTGCAATTGTTGCATGCTGTGATTTCAAGAAAGCTC
CTGTCACCTGAAGTCTATGATGTCATGGATAAAGTAAGGGTAGCTGCCAT
TCGAGATGCACGTCCCTCAACCCGCACCCGTTCTTCTCGACTCCTCTTAC
GCTTCCTCACTACATATCCAATGGAAGATCGCCGACTTCGAGGTCACTTG
GACTTTTTCCTTCGCAACCTTGAATATCCAACAATTCAAGGTCGATTAGC
AGCACTCCAAGCTCTCCTTGCACTTGTCACTCGACTACCCTCCGCCACCC
TCACCACTCATTCCTCTCGCATCCTCCTCCCTCTACTTGTTCGTCTTGTA
CAAGATCCATCGCTTGAATGTCGAGCTGCTGCTAGTGCTGTGTTACGTGC
TCTT
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