mRNA_M-pyrifera_M_contig114033.2923.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114033.2923.1
Unique NamemRNA_M-pyrifera_M_contig114033.2923.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114033.2923.1 vs. uniprot
Match: A0A3E0PL81_9BACT (Exo-alpha-sialidase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PL81_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.730e-7
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   19 GEELDIERSTVVEGDAEWDWTQARTVMVPVENPYFLT 129
            G++L ++ ST++EGDAEWDWTQART  VP + P +LT
Sbjct:    9 GDDLHVKLSTMIEGDAEWDWTQARTAYVPGDEPLWLT 45
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BLAST of mRNA_M-pyrifera_M_contig114033.2923.1 vs. uniprot
Match: A0A518HPS3_9BACT (Uncharacterized protein n=2 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HPS3_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   25 ELDIERSTVVEGDAEWDWTQARTVMVPV-ENPYFLT 129
            EL+IERS +VEGD++WDWTQART +    ENP+ LT
Sbjct:   27 ELEIERSVIVEGDSDWDWTQARTAIARRRENPFVLT 62
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BLAST of mRNA_M-pyrifera_M_contig114033.2923.1 vs. uniprot
Match: A0A5B9M5A0_9BACT (Uncharacterized protein n=2 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9M5A0_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   28 LDIERSTVVEGDAEWDWTQARTVMVPV-ENPYFLT 129
            L I RS +V GD+ WDWTQART  VP  ++P+FLT
Sbjct:   34 LQINRSVIVAGDSNWDWTQARTAKVPYSDHPFFLT 68
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BLAST of mRNA_M-pyrifera_M_contig114033.2923.1 vs. uniprot
Match: M5RTP5_9BACT (Sialidase n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RTP5_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   13 VVGEELDIERSTVVEGDAEWDWTQARTVMVPVENPYFLT 129
            ++G++L I R  V EGDA+WDWTQART +V  E+ + LT
Sbjct:   29 LLGQDLTITRGIVAEGDAQWDWTQARTGVVSGEDGFALT 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114033.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3E0PL81_9BACT1.730e-759.46Exo-alpha-sialidase n=1 Tax=Planctomycetes bacteri... [more]
A0A518HPS3_9BACT2.920e-663.89Uncharacterized protein n=2 Tax=Stieleria neptunia... [more]
A0A5B9M5A0_9BACT2.620e-560.00Uncharacterized protein n=2 Tax=Stieleria maiorica... [more]
M5RTP5_9BACT4.900e-553.85Sialidase n=2 Tax=Rhodopirellula TaxID=265488 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114033contigM-pyrifera_M_contig114033:447..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.608595-CDS-M-pyrifera_M_contig114033:446..5751622815655.608595-CDS-M-pyrifera_M_contig114033:446..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114033 447..575 +
1692277507.1999054-CDS-M-pyrifera_M_contig114033:446..5751692277507.1999054-CDS-M-pyrifera_M_contig114033:446..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114033 447..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114033.2923.1prot_M-pyrifera_M_contig114033.2923.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114033 447..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114033.2923.1

>prot_M-pyrifera_M_contig114033.2923.1 ID=prot_M-pyrifera_M_contig114033.2923.1|Name=mRNA_M-pyrifera_M_contig114033.2923.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
ACVVVVGEELDIERSTVVEGDAEWDWTQARTVMVPVENPYFLT
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mRNA from alignment at M-pyrifera_M_contig114033:447..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114033.2923.1 ID=mRNA_M-pyrifera_M_contig114033.2923.1|Name=mRNA_M-pyrifera_M_contig114033.2923.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig114033:447..575+ (Macrocystis pyrifera P11B4 male)
GCGTGCGTCGTTGTCGTCGGCGAGGAACTGGACATCGAGCGATCGACGGT
CGTCGAAGGCGATGCCGAGTGGGACTGGACTCAGGCGCGAACGGTGATGG
TGCCGGTCGAGAATCCGTATTTCCTGACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114033:447..575+

>mRNA_M-pyrifera_M_contig114033.2923.1 ID=mRNA_M-pyrifera_M_contig114033.2923.1|Name=mRNA_M-pyrifera_M_contig114033.2923.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig114033:447..575+ (Macrocystis pyrifera P11B4 male)
GCGTGCGTCGTTGTCGTCGGCGAGGAACTGGACATCGAGCGATCGACGGT
CGTCGAAGGCGATGCCGAGTGGGACTGGACTCAGGCGCGAACGGTGATGG
TGCCGGTCGAGAATCCGTATTTCCTGACCGCGTGCGTCGTTGTCGTCGGC
GAGGAACTGGACATCGAGCGATCGACGGTCGTCGAAGGCGATGCCGAGTG
GGACTGGACTCAGGCGCGAACGGTGATGGTGCCGGTCGAGAATCCGTATT
TCCTGACC
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