mRNA_M-pyrifera_M_contig114030.2921.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114030.2921.1
Unique NamemRNA_M-pyrifera_M_contig114030.2921.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: S8DKD5_9LAMI (J domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DKD5_9LAMI)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-19
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDKADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVDAN 228
            +D+YKILGVA+  P   IKKAY+KLALQWHPDK ++E +AE  + KFQE+ AAYE+L D +KR RYD+GEDV+ N
Sbjct:  119 KDWYKILGVAKTAPVLEIKKAYKKLALQWHPDK-NTENRAEA-EAKFQEIAAAYEILGDDEKRARYDSGEDVEGN 191          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A812QCC3_SYMMI (P58IPK protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QCC3_SYMMI)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-19
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDKADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVDAN 228
            +D+YKILGV R+   K IKK+YR+LALQWHPDK   EE+ E  ++KFQ +  AYEVL+D +K+ +YD GE+V  N
Sbjct:   14 KDYYKILGVPRSADKKAIKKSYRELALQWHPDKHSGEEEKEKAEVKFQLIAEAYEVLSDDEKKGKYDRGEEVFEN 88          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A5A8CG78_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CG78_CAFRO)

HSP 1 Score: 89.7 bits (221), Expect = 9.890e-19
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    7 DFYKILGVARNTPDKVIKKAYRKLALQWHPDKADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVDANPEQXXXXXXXXXXXXXXXXXXXXXFHFHFG 318
            D+YK+L V R+   + IKKAYR+ AL+WHPDKA SE+  E +  KF+E+  AYEVL+D +K+ RYD GEDVD   +Q                     F FHFG
Sbjct:  392 DYYKVLAVPRSADARTIKKAYRRAALEWHPDKAPSEDVREQYDTKFKEINLAYEVLSDPEKKGRYDRGEDVDQPQQQQHRGGHPFGGFPGGFRSGGSTFTFHFG 495          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A068UE50_COFCA (J domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068UE50_COFCA)

HSP 1 Score: 89.4 bits (220), Expect = 1.320e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDK-ADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVD 222
            +D+YKILGV++  P   IKKAY+KLALQWHPDK  D+ E+AE    KF+E+ AAYEVL D++KR RYD+GED+D
Sbjct:  370 KDWYKILGVSKTAPVSEIKKAYKKLALQWHPDKNVDNREEAEA---KFREIAAAYEVLGDEEKRTRYDSGEDID 440          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: UPI00125D96D5 (dnaJ protein P58IPK homolog n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D96D5)

HSP 1 Score: 89.0 bits (219), Expect = 1.810e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDK-ADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVD 222
            +D+YKILG+++ +    IKKAY+KLALQWHPDK AD+ E+AE    KF+E+ AAYEVL D+DKR RYD GED+D
Sbjct:  371 KDWYKILGISKTSSASEIKKAYKKLALQWHPDKNADNSEEAEA---KFREIAAAYEVLGDEDKRTRYDRGEDID 441          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: G5A6K4_PHYSP (J domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A6K4_PHYSP)

HSP 1 Score: 89.0 bits (219), Expect = 1.840e-18
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 TEDFYKILGVARNTPDKVIKKAYRKLALQWHPDKADSEEQAE--TFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVDANPEQXXXXXXXXXXXXXXXXXXXXXFHFHFG 318
            T+++YKILGVARN+  K IKKAYRK AL+WHPDK   +++AE    + +F ++  AYE+L++++ R  YD GEDV  NP+Q                     FHF+FG
Sbjct:  383 TKNYYKILGVARNSEAKEIKKAYRKQALEWHPDKHTDKDEAEREAVEKRFHDIAEAYEILSNEETRAMYDRGEDVSGNPQQQQQHRGNPFSNAHFFQQGARTFHFNFG 490          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A7S0H4M3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H4M3_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 3.300e-18
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDKADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVD 222
            +D+Y+ILGVARN  DK IKKA+RKLAL++HPDK   +EQ E  + +F+++  AYEVLTD +KR RYD GEDV+
Sbjct:  138 KDYYQILGVARNANDKEIKKAFRKLALKFHPDKVSPDEQEEA-EARFRDIGEAYEVLTDSEKRGRYDRGEDVE 209          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A7S0J364_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J364_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 4.300e-18
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDK-ADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVDANPEQ 237
            ED+YK+L V+R+   + IKKAY +LA+++HPDK  D  + AE    KF+ V +AYEVL+D+DKR +YDAGED+ ANPEQ
Sbjct:   66 EDYYKVLQVSRSASSREIKKAYHRLAVEYHPDKNPDDRDGAEA---KFKAVASAYEVLSDEDKRVKYDAGEDITANPEQ 141          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A7S0DD79_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DD79_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 4.880e-18
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDK-ADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVD 222
            +D+YKILGV+++  D+ +KKAYRK+AL+WHPDK   SE +A+  + KF++V  AY++L+D  KRRRYDAGED+D
Sbjct:  389 KDYYKILGVSQDASDRDLKKAYRKMALKWHPDKNTGSESEAKEAEAKFKDVNEAYQILSDDQKRRRYDAGEDLD 462          
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Match: A0A0E0CH91_9ORYZ (J domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CH91_9ORYZ)

HSP 1 Score: 82.4 bits (202), Expect = 6.930e-18
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 EDFYKILGVARNTPDKVIKKAYRKLALQWHPDK-ADSEEQAETFKLKFQEVTAAYEVLTDQDKRRRYDAGEDVD 222
            +D+YKILG+++      IK+AY+KLALQWHPDK  D+ E+AE     F+E+ AAYEVL D+DKR RYD GED+D
Sbjct:   20 KDWYKILGISKTASAAEIKRAYKKLALQWHPDKNVDNREEAENM---FREIAAAYEVLGDEDKRVRYDRGEDLD 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114030.2921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S8DKD5_9LAMI1.020e-1962.67J domain-containing protein (Fragment) n=1 Tax=Gen... [more]
A0A812QCC3_SYMMI1.270e-1956.00P58IPK protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A5A8CG78_CAFRO9.890e-1945.19Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A068UE50_COFCA1.320e-1862.16J domain-containing protein n=4 Tax=Coffea TaxID=1... [more]
UPI00125D96D51.810e-1862.16dnaJ protein P58IPK homolog n=2 Tax=Ipomoea TaxID=... [more]
G5A6K4_PHYSP1.840e-1843.52J domain-containing protein n=3 Tax=Phytophthora T... [more]
A0A7S0H4M3_9EUKA3.300e-1860.27Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0J364_9EUKA4.300e-1855.70Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0DD79_9EUKA4.880e-1856.76Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0E0CH91_9ORYZ6.930e-1858.11J domain-containing protein n=1 Tax=Oryza meridion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114030contigM-pyrifera_M_contig114030:253..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog4792.ETI41484
KEGG koko:K09523,ko:K09527
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005886,GO:0008150,GO:0012505,GO:0016020,GO:0031974,GO:0035821,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043902,GO:0043903,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044788,GO:0044794,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0065007,GO:0070013,GO:0071944
EggNOG free text desc.DnaJ molecular chaperone homology domain
EggNOG OGs3Q9X6@4776,COG0484@1,KOG0550@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.5345232-CDS-M-pyrifera_M_contig114030:252..5731622815655.5345232-CDS-M-pyrifera_M_contig114030:252..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114030 253..573 -
1692277507.1820571-CDS-M-pyrifera_M_contig114030:252..5731692277507.1820571-CDS-M-pyrifera_M_contig114030:252..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114030 253..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114030.2921.1prot_M-pyrifera_M_contig114030.2921.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114030 253..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114030.2921.1

>prot_M-pyrifera_M_contig114030.2921.1 ID=prot_M-pyrifera_M_contig114030.2921.1|Name=mRNA_M-pyrifera_M_contig114030.2921.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
TEDFYKILGVARNTPDKVIKKAYRKLALQWHPDKADSEEQAETFKLKFQE
VTAAYEVLTDQDKRRRYDAGEDVDANPEQQQQPHRQQHPFFRRRGGGGGG
FHFHFG*
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mRNA from alignment at M-pyrifera_M_contig114030:253..573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114030.2921.1 ID=mRNA_M-pyrifera_M_contig114030.2921.1|Name=mRNA_M-pyrifera_M_contig114030.2921.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig114030:253..573- (Macrocystis pyrifera P11B4 male)
ACCGAAGACTTTTACAAAATCCTCGGTGTCGCCCGCAACACACCAGACAA AGTCATCAAAAAGGCCTACCGCAAGCTCGCGCTCCAGTGGCACCCAGACA AGGCCGACTCGGAAGAGCAGGCCGAGACCTTCAAGCTCAAGTTCCAGGAA GTCACGGCGGCCTACGAAGTCCTCACCGACCAAGACAAACGCAGACGCTA CGACGCAGGAGAAGACGTGGACGCCAACCCCGAGCAGCAGCAGCAACCCC ACCGCCAACAACACCCCTTCTTCCGGAGGAGGGGAGGAGGCGGAGGGGGA TTTCACTTCCACTTCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114030:253..573-

>mRNA_M-pyrifera_M_contig114030.2921.1 ID=mRNA_M-pyrifera_M_contig114030.2921.1|Name=mRNA_M-pyrifera_M_contig114030.2921.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig114030:253..573- (Macrocystis pyrifera P11B4 male)
ACCGAAGACTTTTACAAAATCCTCGGTGTCGCCCGCAACACACCAGACAA
AGTCATCAAAAAGGCCTACCGCAAGCTCGCGCTCCAGTGGCACCCAGACA
AGGCCGACTCGGAAGAGCAGGCCGAGACCTTCAAGCTCAAGTTCCAGGAA
GTCACGGCGGCCTACGAAGTCCTCACCGACCAAGACAAACGCAGACGCTA
CGACGCAGGAGAAGACGTGGACGCCAACCCCGAGCAGCAGCAGCAACCCC
ACCGCCAACAACACCCCTTCTTCCGGAGGAGGGGAGGAGGCGGAGGGGGA
TTTCACTTCCACTTCGGGTGAACCGAAGACTTTTACAAAATCCTCGGTGT
CGCCCGCAACACACCAGACAAAGTCATCAAAAAGGCCTACCGCAAGCTCG
CGCTCCAGTGGCACCCAGACAAGGCCGACTCGGAAGAGCAGGCCGAGACC
TTCAAGCTCAAGTTCCAGGAAGTCACGGCGGCCTACGAAGTCCTCACCGA
CCAAGACAAACGCAGACGCTACGACGCAGGAGAAGACGTGGACGCCAACC
CCGAGCAGCAGCAGCAACCCCACCGCCAACAACACCCCTTCTTCCGGAGG
AGGGGAGGAGGCGGAGGGGGATTTCACTTCCACTTCGGGTGA
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