mRNA_M-pyrifera_M_contig114029.2920.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114029.2920.1
Unique NamemRNA_M-pyrifera_M_contig114029.2920.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A7Y4WGG3_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4WGG3_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-8
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = 1
Query:   19 WEAYFEDT-PPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHT------DLSLASTYSRLLHPGGIAVVVAGN 438
            W A++     P +S +     VE + +G +P G   RA+EVGCGTG +  WLA R  +V+GVD S  A ++AR ++GD    C       L D          G FD +FD    H           A+  + +L PGG+ + + G+
Sbjct:    6 WNAHYASGFMPWDSDEPDPALVETMEAGTIPPG---RALEVGCGTGTNALWLAARGLDVLGVDLSPLAVDRARAKLGDAASACRFEVRDFLKD-------PPQGVFDFVFDRGCFHVFDAPRERKRFAALVAGVLAPGGLWLSLIGS 142          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: UPI00110C4349 (class I SAM-dependent methyltransferase n=1 Tax=Nonomuraea basaltis TaxID=2495887 RepID=UPI00110C4349)

HSP 1 Score: 56.6 bits (135), Expect = 7.990e-7
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   46 PGESGKVVSQFVEAV--SSGL--VPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARN---RVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHTDL-----SLASTYSRLLHPGGIAVVV 429
            P E+G+ V + VEAV  ++G   +PVG   RA+++GCGTG  + WLA R  +  GVD +  A ++AR    R G + R  W      +GD +   G  +  G+ +LFD   LH+       +     +R+  PG + +++
Sbjct:   16 PWETGEPVPELVEAVDGTAGFPALPVG---RALDIGCGTGTHVIWLAQRGWDAAGVDLTSVAVDRAREKAKRAGVEAR--W-----YVGDFMQPEGLGLGDGYGLLFDRGCLHSIPHGSRDAYVRAVTRIAAPGAVLLIL 145          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A3E0HET4_9PSEU (Methyltransferase family protein n=1 Tax=Kutzneria buriramensis TaxID=1045776 RepID=A0A3E0HET4_9PSEU)

HSP 1 Score: 53.9 bits (128), Expect = 6.620e-6
Identity = 44/147 (29.93%), Postives = 68/147 (46.26%), Query Frame = 1
Query:   31 FEDTPPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGS---VLGDVVLESGGDVAGGFDVLFDHQVLHTDLS-----LASTYSRLLHPGGIAVVVAGNARE 447
            +E   P E   V  + ++ V  G V      R +++GCGTG +  +LA    +VVGVD++  A E+A  R  D+     GV      V GD+      D+ G FD+L D+  +          +A T  RL  PG +  +   +AR+
Sbjct:   10 YEKGAPWERYGVGQEVIDLVEGGRVSPKTHPRVLDLGCGTGATTVYLAKLGYDVVGVDFTPIALERAEKRAADE-----GVADRCRFVHGDLTASQIPDLTGPFDLLIDYSTIDDARRPQRRLMARTVQRLSRPGSLYFLWCFSARK 151          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A1H6EXZ2_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Nonomuraea solani TaxID=1144553 RepID=A0A1H6EXZ2_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 3.010e-5
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   46 PGESGKVVSQFVEAV--SSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARN---RVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHT 366
            P E+   V + VEAV  ++G   +  G RA+++GCGTG  + WLAGR  +  GVD +  A  +AR    R G + R  W      +GD +  +G  +  G+ +LFD   LH+
Sbjct:   16 PWETRGPVPELVEAVDGTAGFPALPAG-RALDIGCGTGTHVIWLAGRGWDAAGVDLTPVAIARAREKAERAGVQAR--W-----YVGDFMDPAGLGLGDGYGLLFDRGCLHS 119          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A264DL00_9BACL (SAM-dependent methyltransferase n=1 Tax=Paenibacillus sp. VTT E-133280 TaxID=1986222 RepID=A0A264DL00_9BACL)

HSP 1 Score: 52.0 bits (123), Expect = 3.830e-5
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  106 PVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHTD-----LSLASTYSRLLHPGG 414
            P  K ++ +EVGCGTG +L ++A     V G+D SK A EKA  R+  ++ G W  G  ++GD++     D +  FD + D++ + T+     + + +   R+L P G
Sbjct:   36 PNRKEIKILEVGCGTGANLWYVAREGFSVYGIDGSKTAVEKANARLNSEIPG-WS-GELLIGDIISLPYNDAS--FDAVIDNEAIATNSYDNAVEMYNEIYRVLKPNG 139          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A536ADU6_9CHLR (Methyltransferase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536ADU6_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 4.980e-5
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   43 PPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHTDLSLASTYSRLLHPGGIAVVV 429
            PP ++G    +    V+S   P G   RA+++GCGTG ++ +LA +  E  GVD++ +A  KAR R  D    C       +GDV   S   VAG FD+  D   LH   S+A++ SR  +  G+A V+
Sbjct:   16 PPWDTGVTPPELERFVASH--PPG---RAVDLGCGTGTNVVYLARQGWEAAGVDFAGRAIAKARRRARDAGVACT----LTVGDVTRLS---VAGPFDLALDIGCLH---SIAAS-SRAGYAAGLARVM 128          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A535HIH8_9CHLR (Class I SAM-dependent methyltransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HIH8_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 4.980e-5
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   43 PPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHT-----DLSLASTYSRLLHPGG 414
            PP ++G    + V  V S   P G   RA+++GCGTG ++ +LA      VGVD++ +A  KAR R  +    C      V+GDV   +   V G FD+  D   LH+         A+  SR++ PGG
Sbjct:   16 PPWDTGVTPPELVRFVESH--PAG---RALDLGCGTGTNVVYLARHGWSAVGVDFAGRAIAKARRRAREAGVTCT----FVVGDVTRLA---VPGPFDLALDIGCLHSIPPSGRPGYATGLSRVVRPGG 132          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A3N5AAZ5_9ACTN (Methyltransferase family protein n=1 Tax=Streptomyces sp. TLI_185 TaxID=2485151 RepID=A0A3N5AAZ5_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 7.090e-5
Identity = 45/111 (40.54%), Postives = 55/111 (49.55%), Query Frame = 1
Query:  124 RAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLHTDLSLASTYSRL---LHPGGIAVVVAGNARE 447
            RA++VGCGTG  +  LAGR EEV GVD       +AR   G++        G V   V     G   G +DV+    VLH  L LA   +R    L PGG  +VV G ARE
Sbjct:   41 RALDVGCGTGDLVRLLAGRAEEVCGVDSDPAIVARARELSGERY-------GHVTFAVADAPDGLPPGSYDVITCVAVLH-HLPLAGALTRFREQLAPGGTLLVV-GLARE 142          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: A0A1N7DW68_9EURY (Methyltransferase domain-containing protein n=1 Tax=Haladaptatus litoreus TaxID=553468 RepID=A0A1N7DW68_9EURY)

HSP 1 Score: 50.8 bits (120), Expect = 8.670e-5
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   16 RW--EAYFEDT-PPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDK 252
            RW  E Y  +T PP ++GK     V AV S     G   R ++VGCGTG    W+A      VG+D+S+K  E+AR +  ++
Sbjct:   14 RWWNEVYESETAPPWDTGKPQPALVNAVKSD----GLSGRVLDVGCGTGTHALWVAAEGHTAVGIDFSEKGIEQAREKAEER 91          
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Match: UPI0006787092 (class I SAM-dependent methyltransferase n=1 Tax=Haladaptatus cibarius TaxID=453847 RepID=UPI0006787092)

HSP 1 Score: 50.8 bits (120), Expect = 8.670e-5
Identity = 37/117 (31.62%), Postives = 55/117 (47.01%), Query Frame = 1
Query:   19 WEAYFED--TPPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGTGVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVVLESGGDVAGGFDVLFDHQVLH 363
            W   +E   TPP + G+     V AV S     G   R ++VGCGTG    W+A      VG+D+S+K  E+AR R  ++     G+  +      L+   D+ G FD + D  + H
Sbjct:   16 WNEVYESETTPPWDIGEPQPALVNAVRSD----GLSGRVLDVGCGTGTHALWVAAEGHTAVGIDFSEKGIEQARERAEER-----GLDATFRVADALDVSDDI-GTFDTVLDSGLFH 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114029.2920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7Y4WGG3_9BACT1.870e-831.97Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]
UPI00110C43497.990e-732.14class I SAM-dependent methyltransferase n=1 Tax=No... [more]
A0A3E0HET4_9PSEU6.620e-629.93Methyltransferase family protein n=1 Tax=Kutzneria... [more]
A0A1H6EXZ2_9ACTN3.010e-535.71Methyltransferase domain-containing protein n=1 Ta... [more]
A0A264DL00_9BACL3.830e-532.41SAM-dependent methyltransferase n=1 Tax=Paenibacil... [more]
A0A536ADU6_9CHLR4.980e-535.66Methyltransferase domain-containing protein n=1 Ta... [more]
A0A535HIH8_9CHLR4.980e-534.11Class I SAM-dependent methyltransferase n=1 Tax=Ch... [more]
A0A3N5AAZ5_9ACTN7.090e-540.54Methyltransferase family protein n=1 Tax=Streptomy... [more]
A0A1N7DW68_9EURY8.670e-537.80Methyltransferase domain-containing protein n=1 Ta... [more]
UPI00067870928.670e-531.62class I SAM-dependent methyltransferase n=1 Tax=Ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114029contigM-pyrifera_M_contig114029:2..556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue9.1e-11
Seed eggNOG ortholog81824.XP_001744588.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thiopurine S-methyltransferase (TPMT)
EggNOG OGs2CVMP@1,2S4GW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.4764884-CDS-M-pyrifera_M_contig114029:1..3171622815655.4764884-CDS-M-pyrifera_M_contig114029:1..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114029 2..317 +
1692277507.1542106-CDS-M-pyrifera_M_contig114029:1..3171692277507.1542106-CDS-M-pyrifera_M_contig114029:1..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114029 2..317 +
1622815655.4912808-CDS-M-pyrifera_M_contig114029:422..5561622815655.4912808-CDS-M-pyrifera_M_contig114029:422..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114029 423..556 +
1692277507.1727788-CDS-M-pyrifera_M_contig114029:422..5561692277507.1727788-CDS-M-pyrifera_M_contig114029:422..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114029 423..556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114029.2920.1prot_M-pyrifera_M_contig114029.2920.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114029 2..556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114029.2920.1

>prot_M-pyrifera_M_contig114029.2920.1 ID=prot_M-pyrifera_M_contig114029.2920.1|Name=mRNA_M-pyrifera_M_contig114029.2920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
AGEADRWEAYFEDTPPGESGKVVSQFVEAVSSGLVPVGKGVRAIEVGCGT
GVSLEWLAGRFEEVVGVDWSKKACEKARNRVGDKVRGCWGVGGSVLGDVV
LESGGDVAGGFDVLFDHQVLHTDLSLASTYSRLLHPGGIAVVVAGNAREP
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mRNA from alignment at M-pyrifera_M_contig114029:2..556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114029.2920.1 ID=mRNA_M-pyrifera_M_contig114029.2920.1|Name=mRNA_M-pyrifera_M_contig114029.2920.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig114029:2..556+ (Macrocystis pyrifera P11B4 male)
GCTGGGGAAGCTGATCGCTGGGAGGCCTACTTTGAGGATACCCCGCCTGG GGAGAGCGGGAAGGTCGTGAGCCAATTTGTGGAGGCAGTTTCTAGCGGAC TGGTGCCAGTTGGGAAAGGTGTGAGGGCGATTGAGGTGGGGTGTGGGACT GGTGTATCGTTGGAGTGGTTGGCAGGGCGATTTGAAGAGGTGGTTGGTGT GGATTGGTCAAAGAAGGCTTGCGAAAAGGCAAGGAATCGAGTTGGGGACA AGGTAAGAGGGTGTTGGGGTGTAGGTGGGAGTGTTCTGGGTGATGTGGTG TTGGAAAGTGGGGGAGGTTGGGTGGTTGTAGGAGAACACTCGTCTATTCT CCATTCCATGCTCTTTTCACCCATTCTACCCTTTCTCCTGTAGGCGTCTG TGGTGTGTGGTGATTTGCGAGATGTAGCGGGTGGGTTTGACGTGTTGTTC GACCACCAAGTGCTGCACACGGACTTGTCATTGGCGTCGACGTATTCTCG GCTGCTGCATCCTGGAGGAATCGCGGTGGTGGTTGCCGGGAATGCGAGAG AGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114029:2..556+

>mRNA_M-pyrifera_M_contig114029.2920.1 ID=mRNA_M-pyrifera_M_contig114029.2920.1|Name=mRNA_M-pyrifera_M_contig114029.2920.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig114029:2..556+ (Macrocystis pyrifera P11B4 male)
GCTGGGGAAGCTGATCGCTGGGAGGCCTACTTTGAGGATACCCCGCCTGG
GGAGAGCGGGAAGGTCGTGAGCCAATTTGTGGAGGCAGTTTCTAGCGGAC
TGGTGCCAGTTGGGAAAGGTGTGAGGGCGATTGAGGTGGGGTGTGGGACT
GGTGTATCGTTGGAGTGGTTGGCAGGGCGATTTGAAGAGGTGGTTGGTGT
GGATTGGTCAAAGAAGGCTTGCGAAAAGGCAAGGAATCGAGTTGGGGACA
AGGTAAGAGGGTGTTGGGGTGTAGGTGGGAGTGTTCTGGGTGATGTGGTG
TTGGAAAGTGGGGGAGGCTGGGGAAGCTGATCGCTGGGAGGCCTACTTTG
AGGATACCCCGCCTGGGGAGAGCGGGAAGGTCGTGAGCCAATTTGTGGAG
GCAGTTTCTAGCGGACTGGTGCCAGTTGGGAAAGGTGTGAGGGCGATTGA
GGTGGGGTGTGGGACTGGTGTATCGTTGGAGTGGTTGGCAGGGCGATTTG
AAGAGGTGGTTGGTGTGGATTGGTCAAAGAAGGCTTGCGAAAAGGCAAGG
AATCGAGTTGGGGACAAGGTAAGAGGGTGTTGGGGTGTAGGTGGGAGTGT
TCTGGGTGATGTGGTGTTGGAAAGTGGGGGAGATGTAGCGGGTGGGTTTG
ACGTGTTGTTCGACCACCAAGTGCTGCACACGGACTTGTCATTGGCGTCG
ACGTATTCTCGGCTGCTGCATCCTGGAGGAATCGCGGTGGTGGTTGCCGG
GAATGCGAGAGAGCCAATGTAGCGGGTGGGTTTGACGTGTTGTTCGACCA
CCAAGTGCTGCACACGGACTTGTCATTGGCGTCGACGTATTCTCGGCTGC
TGCATCCTGGAGGAATCGCGGTGGTGGTTGCCGGGAATGCGAGAGAGCCA
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