mRNA_M-pyrifera_M_contig114028.2919.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114028.2919.1
Unique NamemRNA_M-pyrifera_M_contig114028.2919.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114028.2919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114028contigM-pyrifera_M_contig114028:91..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.4419785-CDS-M-pyrifera_M_contig114028:90..5731622815655.4419785-CDS-M-pyrifera_M_contig114028:90..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114028 91..573 -
1692277507.1432245-CDS-M-pyrifera_M_contig114028:90..5731692277507.1432245-CDS-M-pyrifera_M_contig114028:90..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114028 91..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114028.2919.1prot_M-pyrifera_M_contig114028.2919.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114028 91..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114028.2919.1

>prot_M-pyrifera_M_contig114028.2919.1 ID=prot_M-pyrifera_M_contig114028.2919.1|Name=mRNA_M-pyrifera_M_contig114028.2919.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
GSLIKLTSLRLSQNNFTGTIPTEFGNLVNLTSLQLTENNLNGNIPSELGD
LKLISTLSLNKNGLSGNIPISLGNLTQLKYLRLSENNLDGEIPKELGNLT
ELLWLFLHKNQLSGSLPSELGELSNLIYLFAFSNNLSGEIPSSYANMTKL
ENLSLSENNIS
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mRNA from alignment at M-pyrifera_M_contig114028:91..573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114028.2919.1 ID=mRNA_M-pyrifera_M_contig114028.2919.1|Name=mRNA_M-pyrifera_M_contig114028.2919.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig114028:91..573- (Macrocystis pyrifera P11B4 male)
GGGAGTTTAATTAAACTAACGAGCCTGAGATTATCTCAAAATAATTTTAC
TGGAACTATTCCAACCGAATTTGGAAACTTGGTCAATCTTACATCCTTGC
AATTGACGGAAAATAATCTCAACGGTAATATTCCAAGTGAACTCGGAGAC
CTCAAGCTCATCTCAACACTTAGTCTCAATAAAAACGGATTAAGTGGTAA
CATTCCAATTTCTCTTGGAAATCTTACTCAGTTAAAATACCTGAGGCTCA
GCGAAAATAATCTAGATGGCGAAATACCTAAGGAATTAGGTAATCTAACG
GAGTTACTATGGCTATTTCTTCATAAGAACCAACTTTCTGGATCACTGCC
TTCAGAACTGGGAGAATTAAGCAATCTGATATATCTCTTCGCCTTCTCTA
ACAATTTGAGTGGTGAAATCCCTTCCTCGTATGCAAACATGACGAAACTT
GAGAATCTATCATTATCCGAAAATAACATTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114028:91..573-

>mRNA_M-pyrifera_M_contig114028.2919.1 ID=mRNA_M-pyrifera_M_contig114028.2919.1|Name=mRNA_M-pyrifera_M_contig114028.2919.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig114028:91..573- (Macrocystis pyrifera P11B4 male)
GGGAGTTTAATTAAACTAACGAGCCTGAGATTATCTCAAAATAATTTTAC
TGGAACTATTCCAACCGAATTTGGAAACTTGGTCAATCTTACATCCTTGC
AATTGACGGAAAATAATCTCAACGGTAATATTCCAAGTGAACTCGGAGAC
CTCAAGCTCATCTCAACACTTAGTCTCAATAAAAACGGATTAAGTGGTAA
CATTCCAATTTCTCTTGGAAATCTTACTCAGTTAAAATACCTGAGGCTCA
GCGAAAATAATCTAGATGGCGAAATACCTAAGGAATTAGGTAATCTAACG
GAGTTACTATGGCTATTTCTTCATAAGAACCAACTTTCTGGATCACTGCC
TTCAGAACTGGGAGAATTAAGCAATCTGATATATCTCTTCGCCTTCTCTA
ACAATTTGAGTGGTGAAATCCCTTCCTCGTATGCAAACATGACGAAACTT
GAGAATCTATCATTATCCGAAAATAACATTTCTGGGAGTTTAATTAAACT
AACGAGCCTGAGATTATCTCAAAATAATTTTACTGGAACTATTCCAACCG
AATTTGGAAACTTGGTCAATCTTACATCCTTGCAATTGACGGAAAATAAT
CTCAACGGTAATATTCCAAGTGAACTCGGAGACCTCAAGCTCATCTCAAC
ACTTAGTCTCAATAAAAACGGATTAAGTGGTAACATTCCAATTTCTCTTG
GAAATCTTACTCAGTTAAAATACCTGAGGCTCAGCGAAAATAATCTAGAT
GGCGAAATACCTAAGGAATTAGGTAATCTAACGGAGTTACTATGGCTATT
TCTTCATAAGAACCAACTTTCTGGATCACTGCCTTCAGAACTGGGAGAAT
TAAGCAATCTGATATATCTCTTCGCCTTCTCTAACAATTTGAGTGGTGAA
ATCCCTTCCTCGTATGCAAACATGACGAAACTTGAGAATCTATCATTATC
CGAAAATAACATTTCT
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