mRNA_M-pyrifera_M_contig114003.2908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114003.2908.1
Unique NamemRNA_M-pyrifera_M_contig114003.2908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: A0A2P6MN57_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MN57_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 3.460e-16
Identity = 44/125 (35.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 RKEVVSIEGTAMVAEALLLMSSKGVSSLAIVDAS-GKLYSTFTLKDLRVVTNARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVT 372
            RKEVV++       EA  LM  K +S LA+++   G L+S  + +D++++     F KLFKTV E+I DVR  +  A FP ++      +  V++++ + R+HR++V++E    V V+SL D+ T
Sbjct:  180 RKEVVTVYTDTPALEAFRLMLEKKISGLAVINREEGTLFSNLSARDIKLIAGEALFTKLFKTVKEFIQDVRSTSNEAYFPIVYVSPDAKIRDVMVKLVSTRMHRLYVVDESVRPVGVVSLGDLTT 304          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: F4QF63_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QF63_CAVFA)

HSP 1 Score: 82.4 bits (202), Expect = 3.940e-16
Identity = 45/128 (35.16%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 KEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTN-ARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFIK 384
            K V+SI       EA  LM+   V+ +A+VD  G + +  + +DL+ + N  R F  L+ TV E+I  VR++   A+ P+I C   D+L++++ RM AA+IHR++V+++  + V VISL D++ + ++
Sbjct:  189 KPVISINFHKTAIEAFELMAEHRVNGIAVVDDKGVIIANISARDLKELLNETRIFENLYLTVGEFISRVRQQDYKAVHPSISCNMNDSLDKLMTRMCAAKIHRVYVVDQDRKPVGVISLHDILEKILE 316          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: D3BNG4_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BNG4_POLPP)

HSP 1 Score: 82.0 bits (201), Expect = 5.110e-16
Identity = 44/127 (34.65%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 KEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTN-ARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFI 381
            K VV+I       EA  LM+ K V+ +A+VD   ++ +  + +DL+ + N  R F  L+ +V E+I  VR++   A+ P+I C   ++L +++ RMAAA+IHR++++N   +LV V+SL D++ + +
Sbjct:  184 KPVVTINSHKRALEAFQLMTEKRVTGIAVVDEKQQILANISARDLKELLNETRIFENLYLSVGEFISKVRQQDYKAVNPSICCTKDESLRKLMTRMAAAKIHRVYMVNNDRKLVGVVSLHDILEKLL 310          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: F0ZL99_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZL99_DICPU)

HSP 1 Score: 82.0 bits (201), Expect = 5.110e-16
Identity = 41/128 (32.03%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    4 KEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTN-ARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFIK 384
            K+V+SI+      +A  LM+S  V+ +A+ D  G + +  + +DL+ + N  R F  L+ +V E+I  VR++   A+ P+I C+  D+L  ++ RM AA+IHR+++++E+ + + VIS+ D++ + ++
Sbjct:  182 KKVISIDFNKRALDAFELMASHRVNGVAVNDEKGHIIANISARDLKELLNETRVFENLYLSVGEFISKVRQQDYKAVNPSISCHMNDSLASIITRMVAAKIHRVYIIDEERKPIGVISIHDILNKILE 309          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: UPI0006451169 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451169)

HSP 1 Score: 79.7 bits (195), Expect = 3.610e-15
Identity = 42/128 (32.81%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 RKEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTNA-RSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFI 381
            +K V+SI       EA  LM+ K V+ +A+VD   +L +  + +DLR + N  R F  L+K+V E++  VR++    + P+I C  +DT+ ++++ MAAA++HR+++++       VISL D++   +
Sbjct:  182 QKPVISINFHKRALEAFQLMAEKRVNGIAVVDDRNQLLANISARDLRELLNENRLFDDLYKSVGEFVTKVRQQDYRGVHPSICCSQEDTMRKLIMSMAAAKVHRVYMVDSDRRPTGVISLHDILLSLL 309          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: L8HEJ6_ACACA (CBS domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEJ6_ACACA)

HSP 1 Score: 79.3 bits (194), Expect = 4.230e-15
Identity = 44/127 (34.65%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    4 KEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVT-NARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFI 381
            K+V++I   A   +A  +M+ +G+S++ +VD  GKL    +++D+RVV  +AR   +L+  V E+I  +     + I PAI C  KDT   V+ ++AA+R+HR++V+ E H  + +ISL D +   +
Sbjct:  175 KDVITIGVNARAIDAFKIMTDRGISAVGVVDEEGKLVGNISVRDIRVVAGDARLIQRLYLGVREFIYKINSERIDIINPAIGCSAKDTYGLVVQKLAASRVHRIYVV-ENHVPIGLISLSDALLPLV 300          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: A0A8J4V5S4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V5S4_9MYCE)

HSP 1 Score: 79.3 bits (194), Expect = 5.090e-15
Identity = 41/128 (32.03%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    4 KEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTN-ARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFIK 384
            KEV+SI+      +A  LM+   V+ +A+ D  G + +  + +DL+ + N +R F  L+ +V E+I  VR++   A+ P+I C   ++L+ ++ +MAAARIHR++++N + + V V+S+ D++ + ++
Sbjct:  185 KEVISIDFNKRALDAFQLMAHHRVNGIAVNDEKGHIIANISARDLKEILNKSRMFDDLYISVGEFISKVRQQDFKAVNPSICCTLDESLQHLITKMAAARIHRVYLVNNERKPVGVVSIHDILEKLLE 312          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: UPI000644CB87 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CB87)

HSP 1 Score: 78.2 bits (191), Expect = 1.330e-14
Identity = 41/127 (32.28%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 KEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTN-ARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVTEFI 381
            K V++I       EA  LM+   V+ +A+VD   ++ +  + +DL+ + N  R F  LF +V E+I  VR++   A+ P+I C   + L++++ RMAAA+IHR+F++++  + + V+SL+D++ + +
Sbjct:  183 KHVITINYHKRALEAFQLMAEHRVNGIAVVDEKNQILANISARDLKELLNETRIFENLFLSVGEFISKVRQQDYKAVHPSICCSKDEPLKKLITRMAAAKIHRVFMVDQDRKPIGVVSLQDILEKIL 309          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: D2VQZ4_NAEGR (Cystathionine-beta-synthase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VQZ4_NAEGR)

HSP 1 Score: 69.7 bits (169), Expect = 1.090e-11
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   58 MSSKGVSSLAIVDASGKLYSTFTLKDLRVVTNARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMV 369
            M    VS LA+VDA+G L    + +D++ +  +  +  L + V  ++  +R ++ N   PAI C  +  L  V+ R+AA RIHRM+V ++Q   V VISLRD++
Sbjct:  157 MQQMKVSGLAVVDATGILIGNLSARDIKAINPSNLYHSLHQGVHTFVQHIREQSYNESHPAISCSEETELGFVIGRLAANRIHRMYVCDKQLHPVKVISLRDII 260          
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Match: A0A6A5BFQ3_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BFQ3_NAEFO)

HSP 1 Score: 66.6 bits (161), Expect = 2.010e-10
Identity = 37/121 (30.58%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   10 VVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVTNARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAARIHRMFVLNEQHELVDVISLRDMVT 372
            V+++E      +    M    VS LA++D +G L    + +D++ +  +  +  L ++V  ++  +R ++ N   PAI C  +  L  V+ R+AA RIHRM+V ++Q     VISLRD+++
Sbjct:  180 VITLEKHMRTIDCFKKMHQMKVSGLAVIDNTGILIGNLSARDIKAINPSNLYHSLHQSVHTFVQHIREQSFNESHPAISCSEETELGFVIGRLAANRIHRMYVCDKQLHPCKVISLRDIIS 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114003.2908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6MN57_9EUKA3.460e-1635.20Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F4QF63_CAVFA3.940e-1635.16Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
D3BNG4_POLPP5.110e-1634.65Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
F0ZL99_DICPU5.110e-1632.03Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
UPI00064511693.610e-1532.81hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
L8HEJ6_ACACA4.230e-1534.65CBS domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A8J4V5S4_9MYCE5.090e-1532.03Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000644CB871.330e-1432.28hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D2VQZ4_NAEGR1.090e-1136.54Cystathionine-beta-synthase n=1 Tax=Naegleria grub... [more]
A0A6A5BFQ3_NAEFO2.010e-1030.58Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114003contigM-pyrifera_M_contig114003:97..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog5786.XP_003288206.1
KEGG koko:K07200
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain in cystathionine beta-synthase and other proteins.
EggNOG OGs3XCUE@554915,COG0517@1,KOG1764@2759
COG Functional cat.C
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.6939414-CDS-M-pyrifera_M_contig114003:96..4831622815654.6939414-CDS-M-pyrifera_M_contig114003:96..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114003 97..483 -
1692277506.9757218-CDS-M-pyrifera_M_contig114003:96..4831692277506.9757218-CDS-M-pyrifera_M_contig114003:96..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114003 97..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114003.2908.1prot_M-pyrifera_M_contig114003.2908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114003 97..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114003.2908.1

>prot_M-pyrifera_M_contig114003.2908.1 ID=prot_M-pyrifera_M_contig114003.2908.1|Name=mRNA_M-pyrifera_M_contig114003.2908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
RKEVVSIEGTAMVAEALLLMSSKGVSSLAIVDASGKLYSTFTLKDLRVVT
NARSFLKLFKTVDEYILDVRRRTANAIFPAIHCYTKDTLERVLLRMAAAR
IHRMFVLNEQHELVDVISLRDMVTEFIK*
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mRNA from alignment at M-pyrifera_M_contig114003:97..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114003.2908.1 ID=mRNA_M-pyrifera_M_contig114003.2908.1|Name=mRNA_M-pyrifera_M_contig114003.2908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig114003:97..483- (Macrocystis pyrifera P11B4 male)
AGGAAGGAGGTGGTTTCCATCGAGGGCACTGCCATGGTGGCCGAGGCCCT GCTCCTCATGAGCTCCAAGGGTGTGTCTTCACTCGCCATTGTTGATGCCA GCGGCAAGCTCTACAGCACCTTCACCCTCAAGGACCTGCGCGTCGTGACC AACGCAAGGTCGTTCCTCAAGCTCTTCAAGACCGTGGACGAGTACATCCT GGACGTGCGCCGCCGTACGGCCAACGCCATCTTCCCTGCCATCCACTGCT ACACGAAGGACACCCTGGAGAGGGTGCTCCTCCGCATGGCGGCTGCTCGC ATCCACCGCATGTTCGTGCTCAACGAACAGCACGAGCTCGTGGACGTCAT CTCCCTACGCGACATGGTCACGGAGTTCATCAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114003:97..483-

>mRNA_M-pyrifera_M_contig114003.2908.1 ID=mRNA_M-pyrifera_M_contig114003.2908.1|Name=mRNA_M-pyrifera_M_contig114003.2908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig114003:97..483- (Macrocystis pyrifera P11B4 male)
AGGAAGGAGGTGGTTTCCATCGAGGGCACTGCCATGGTGGCCGAGGCCCT
GCTCCTCATGAGCTCCAAGGGTGTGTCTTCACTCGCCATTGTTGATGCCA
GCGGCAAGCTCTACAGCACCTTCACCCTCAAGGACCTGCGCGTCGTGACC
AACGCAAGGTCGTTCCTCAAGCTCTTCAAGACCGTGGACGAGTACATCCT
GGACGTGCGCCGCCGTACGGCCAACGCCATCTTCCCTGCCATCCACTGCT
ACACGAAGGACACCCTGGAGAGGGTGCTCCTCCGCATGGCGGCTGCTCGC
ATCCACCGCATGTTCGTGCTCAACGAACAGCACGAGCTCGTGGACGTCAT
CTCCCTACGCGACATGGTCACGGAGTTCATCAAGTGAAGGAAGGAGGTGG
TTTCCATCGAGGGCACTGCCATGGTGGCCGAGGCCCTGCTCCTCATGAGC
TCCAAGGGTGTGTCTTCACTCGCCATTGTTGATGCCAGCGGCAAGCTCTA
CAGCACCTTCACCCTCAAGGACCTGCGCGTCGTGACCAACGCAAGGTCGT
TCCTCAAGCTCTTCAAGACCGTGGACGAGTACATCCTGGACGTGCGCCGC
CGTACGGCCAACGCCATCTTCCCTGCCATCCACTGCTACACGAAGGACAC
CCTGGAGAGGGTGCTCCTCCGCATGGCGGCTGCTCGCATCCACCGCATGT
TCGTGCTCAACGAACAGCACGAGCTCGTGGACGTCATCTCCCTACGCGAC
ATGGTCACGGAGTTCATCAAGTGA
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