mRNA_M-pyrifera_M_contig113998.2903.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113998.2903.1
Unique NamemRNA_M-pyrifera_M_contig113998.2903.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: A0A812W4J6_SYMMI (RABH1E protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W4J6_SYMMI)

HSP 1 Score: 127 bits (320), Expect = 1.580e-36
Identity = 61/80 (76.25%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:   16 RASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            RASFLN SKWI+DVRN+RGSD+II LVGNKTD S+RRQV+VEEGE K+ +EG++F+ETSAKAG+N+KALFRKLA+ALPG+
Sbjct:    1 RASFLNTSKWIEDVRNERGSDVIIVLVGNKTDASERRQVSVEEGEDKSTKEGIMFIETSAKAGFNIKALFRKLATALPGM 80
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BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: A0A662WQ97_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ97_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.680e-35
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    7 RADRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            R DRASFLN SKWI+DVR +RG D++I LVGNKTD+SDRRQV++EEG  KAKEE V+F+ETSAKAGYN+KALFRKLA+ LPG+
Sbjct:  141 RTDRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGM 223
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BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: A0A7S2UZT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZT5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.160e-35
Identity = 61/81 (75.31%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            +RASFLN SKW++DVRN+RG+D++I LVGNKTDLSDRRQV+VEEGE +AK E ++F+ETSAKAGYNVKALF KLA+ALPG+
Sbjct:  110 NRASFLNTSKWVEDVRNERGNDVVIMLVGNKTDLSDRRQVSVEEGEERAKSEQIMFIETSAKAGYNVKALFNKLATALPGM 190
[Close]
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.900e-35
Identity = 60/81 (74.07%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            +RASFLN SKW+DDVRN+RG+D+II LVGNKTDLSDRRQV+ EEGE KAK++ ++F+ETSAKAG+N+K LFRKLA+ALPG+
Sbjct:  108 NRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGM 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: A0A0G4EBT9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EBT9_VITBC)

HSP 1 Score: 127 bits (320), Expect = 2.990e-35
Identity = 62/81 (76.54%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            +RASFLN +KWI+DVR +RGSD+II LVGNKTDL+DRRQV+VEEGE KAKE  ++F+ETSAKAG+N+KALFRKLASALPG+
Sbjct:   99 NRASFLNTTKWIEDVRAERGSDVIIALVGNKTDLADRRQVSVEEGEQKAKENEIMFIETSAKAGFNIKALFRKLASALPGL 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: A0A7S3WKL6_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WKL6_9SPIT)

HSP 1 Score: 127 bits (320), Expect = 3.070e-35
Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPG 252
            +RASFLN SKWI+DVR++RGSD++I LVGNKTDL+DRRQV+ EEGE KAKE GV+F+ETSAK GYN+KALFR+LA ALPG
Sbjct:  100 NRASFLNTSKWIEDVRSERGSDVVIVLVGNKTDLADRRQVSTEEGEEKAKENGVMFIETSAKMGYNIKALFRQLAQALPG 179
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BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: U6L374_EIMTE (RAB6 protein, putative (Fragment) n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6L374_EIMTE)

HSP 1 Score: 124 bits (310), Expect = 6.100e-35
Identity = 58/80 (72.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:   16 RASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            RASF+N +KWI+DVR +RG D++I LVGNKTDLSDRRQV+ EEGE KA+E+G++F+ETSAKAG+NVK LFRKLA+ALPG+
Sbjct:    1 RASFINTTKWIEDVRAERGKDVVIALVGNKTDLSDRRQVSPEEGEQKAREQGILFIETSAKAGHNVKTLFRKLAAALPGL 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.020e-35
Identity = 59/81 (72.84%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            +RASFLN SKWI+DVRN+RG+D+++ LVGNKTDL +RRQV+VEEGE +AK EG++F+ETSAK GYN+KALFRKLA+ALPG+
Sbjct:  105 NRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQVSVEEGEDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGM 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: U6MPP8_9EIME (RAB6 protein, putative (Fragment) n=1 Tax=Eimeria necatrix TaxID=51315 RepID=U6MPP8_9EIME)

HSP 1 Score: 124 bits (311), Expect = 9.300e-35
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            +RASF+N +KWI+DVR +RG D++I LVGNKTDLSDRRQV+ EEGE KA+E+G++F+ETSAKAG+NVK LFRKLA+ALPG+
Sbjct:   11 NRASFINTTKWIEDVRAERGKDVVIALVGNKTDLSDRRQVSPEEGEQKAREQGILFIETSAKAGHNVKTLFRKLAAALPGL 91
[Close]
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Match: UPI001E1E0672 (ras-related protein RABH1d-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0672)

HSP 1 Score: 126 bits (317), Expect = 1.080e-34
Identity = 59/81 (72.84%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   13 DRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGEAKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV 255
            +R SFL+ SKWIDDVRN+RG+D+I+ LVGNKTD +++RQV+VEEGEAKAKE G++F+ETSAKAG+NVKALFRK+A+ALPG+
Sbjct:  101 NRTSFLSTSKWIDDVRNERGNDVILVLVGNKTDQAEKRQVSVEEGEAKAKEHGIMFIETSAKAGFNVKALFRKIAAALPGM 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113998.2903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812W4J6_SYMMI1.580e-3676.25RABH1E protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A662WQ97_9STRA1.680e-3574.70Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S2UZT5_9STRA2.160e-3575.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D1C8_9STRA2.900e-3574.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0G4EBT9_VITBC2.990e-3576.54Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3WKL6_9SPIT3.070e-3576.25Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
U6L374_EIMTE6.100e-3572.50RAB6 protein, putative (Fragment) n=1 Tax=Eimeria ... [more]
D7FMQ4_ECTSI7.020e-3572.84Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
U6MPP8_9EIME9.300e-3571.60RAB6 protein, putative (Fragment) n=1 Tax=Eimeria ... [more]
UPI001E1E06721.080e-3472.84ras-related protein RABH1d-like n=1 Tax=Mercenaria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113998contigM-pyrifera_M_contig113998:34..288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog115417.EPrPW00000022532
Preferred nameRab6
KEGG koko:K07893,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017076,GO:0019001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042147,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901265,GO:1901363
EggNOG free text desc.Rab6 family GTPase. Source PGD
EggNOG OGs1MFEZ@121069,KOG0094@1,KOG0094@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131,ko04147
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.2113965-CDS-M-pyrifera_M_contig113998:33..2881622815654.2113965-CDS-M-pyrifera_M_contig113998:33..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113998 34..288 +
1692277506.6726573-CDS-M-pyrifera_M_contig113998:33..2881692277506.6726573-CDS-M-pyrifera_M_contig113998:33..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113998 34..288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113998.2903.1prot_M-pyrifera_M_contig113998.2903.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113998 34..288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113998.2903.1

>prot_M-pyrifera_M_contig113998.2903.1 ID=prot_M-pyrifera_M_contig113998.2903.1|Name=mRNA_M-pyrifera_M_contig113998.2903.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
RRRADRASFLNVSKWIDDVRNQRGSDIIITLVGNKTDLSDRRQVTVEEGE
AKAKEEGVIFVETSAKAGYNVKALFRKLASALPGV
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mRNA from alignment at M-pyrifera_M_contig113998:34..288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113998.2903.1 ID=mRNA_M-pyrifera_M_contig113998.2903.1|Name=mRNA_M-pyrifera_M_contig113998.2903.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig113998:34..288+ (Macrocystis pyrifera P11B4 male)
CGGCGCCGCGCAGATCGTGCGTCCTTCCTCAACGTCTCCAAGTGGATCGA
CGACGTGCGCAACCAGCGCGGCAGCGACATCATCATCACGCTGGTGGGCA
ACAAGACGGACCTGTCGGACAGGAGGCAGGTGACGGTGGAAGAGGGAGAA
GCCAAGGCGAAGGAGGAGGGCGTGATCTTTGTGGAGACGAGCGCCAAGGC
GGGCTACAACGTCAAGGCGCTCTTCCGCAAGCTCGCTTCTGCTCTCCCCG
GCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113998:34..288+

>mRNA_M-pyrifera_M_contig113998.2903.1 ID=mRNA_M-pyrifera_M_contig113998.2903.1|Name=mRNA_M-pyrifera_M_contig113998.2903.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig113998:34..288+ (Macrocystis pyrifera P11B4 male)
CGGCGCCGCGCAGATCGTGCGTCCTTCCTCAACGTCTCCAAGTGGATCGA
CGACGTGCGCAACCAGCGCGGCAGCGACATCATCATCACGCTGGTGGGCA
ACAAGACGGACCTGTCGGACAGGAGGCAGGTGACGGTGGAAGAGGGAGAA
GCCAAGGCGAAGGAGGAGGGCGTGATCTTTGTGGAGACGAGCGCCAAGGC
GGGCTACAACGTCAAGGCGCTCTTCCGCAAGCTCGCTTCTGCTCTCCCCG
GCGTCCGGCGCCGCGCAGATCGTGCGTCCTTCCTCAACGTCTCCAAGTGG
ATCGACGACGTGCGCAACCAGCGCGGCAGCGACATCATCATCACGCTGGT
GGGCAACAAGACGGACCTGTCGGACAGGAGGCAGGTGACGGTGGAAGAGG
GAGAAGCCAAGGCGAAGGAGGAGGGCGTGATCTTTGTGGAGACGAGCGCC
AAGGCGGGCTACAACGTCAAGGCGCTCTTCCGCAAGCTCGCTTCTGCTCT
CCCCGGCGTC
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