mRNA_M-pyrifera_M_contig113997.2902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113997.2902.1
Unique NamemRNA_M-pyrifera_M_contig113997.2902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113997.2902.1 vs. uniprot
Match: L8GVX6_ACACA (CBS domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVX6_ACACA)

HSP 1 Score: 86.3 bits (212), Expect = 2.320e-18
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 FFMSLVHDKVDSPRTAEEKIFFCRREDKMVDVWKGLVQYNFLSVPVIQKTKNKYYGFVDLADIVTYVV 204
            F  +LV+ + +  R  E K+F   R DK+VDV++GLV +NFLSVPV+QKTK+K++GF+DLADIV YVV
Sbjct:   62 FLAALVYTRAEQLRVPENKVFVAERTDKIVDVFRGLVNHNFLSVPVLQKTKHKWFGFLDLADIVLYVV 129
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BLAST of mRNA_M-pyrifera_M_contig113997.2902.1 vs. uniprot
Match: A0A8J4PLZ4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLZ4_9MYCE)

HSP 1 Score: 75.1 bits (183), Expect = 2.600e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 FFMSLVHDKVDSPRTAEEKIFFCRREDKMVDVWKGLVQYNFLSVPVIQKT-KNKYYGFVDLADIVTYV 201
            FFM +++ K  S +T +E IF C R D +  V+KGL+ + FLSVPV Q+T K ++YGFVDL DIV YV
Sbjct:   48 FFMKMINTKAMSIKTRDEIIFSCERTDNLTQVFKGLINHRFLSVPVFQQTDKKRWYGFVDLFDIVRYV 115
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BLAST of mRNA_M-pyrifera_M_contig113997.2902.1 vs. uniprot
Match: F0ZKD3_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZKD3_DICPU)

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 FFMSLVHDKVDSPRTAEEKIFFCRREDKMVDVWKGLVQYNFLSVPVIQKT-KNKYYGFVDLADIVTYV 201
            F + LV+ +  S +T +E IF C R D +  V+KGL++  FLSVPV Q+T K K+YGF+DL DIV +V
Sbjct:   44 FLIKLVNTRAMSIKTRDEIIFSCERTDNLTKVFKGLIERGFLSVPVFQQTDKKKWYGFIDLLDIVRHV 111
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BLAST of mRNA_M-pyrifera_M_contig113997.2902.1 vs. uniprot
Match: A0A151Z956_9MYCE (CBS (Cystathionine-beta-synthase) domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z956_9MYCE)

HSP 1 Score: 68.9 bits (167), Expect = 4.380e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 FFMSLVHDKVDSPRTAEEKIFFCRREDKMVDVWKGLVQYNFLSVPVIQKT-KNKYYGFVDLADIVTYV 201
            FF  L+  K  + RT +E IF   + DK+  V+KGL +  FLSVPV QKT K K+YGFVDL+DIV YV
Sbjct:   52 FFQKLICTKAMNIRTRDEIIFSANKSDKLHFVFKGLCERRFLSVPVFQKTDKKKWYGFVDLSDIVHYV 119
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BLAST of mRNA_M-pyrifera_M_contig113997.2902.1 vs. uniprot
Match: Q54XK4_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54XK4_DICDI)

HSP 1 Score: 68.6 bits (166), Expect = 5.910e-12
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    7 MSLVHDKVDSPRTAEEKIFFCRREDKMVDVWKGLVQYNFLSVPVIQKT-KNKYYGFVDLADIVTYV 201
            + LV+ +  S +T +E IF C R D +  V+KGL +  FLSVPV Q+T K ++YGF+DL DIV YV
Sbjct:   47 LKLVNSRAMSIKTRDEVIFSCERNDNLTKVFKGLTERGFLSVPVFQQTDKKRWYGFIDLLDIVRYV 112
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113997.2902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
L8GVX6_ACACA2.320e-1857.35CBS domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A8J4PLZ4_9MYCE2.600e-1452.94Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F0ZKD3_DICPU3.100e-1250.00Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A151Z956_9MYCE4.380e-1254.41CBS (Cystathionine-beta-synthase) domain-containin... [more]
Q54XK4_DICDI5.910e-1250.00Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113997contigM-pyrifera_M_contig113997:17..223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog44689.DDB0231602
KEGG koko:K07200
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain in cystathionine beta-synthase and other proteins.
EggNOG OGs3XG5Q@554915,COG0517@1,KOG1764@2759
COG Functional cat.C
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size207
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.158846-CDS-M-pyrifera_M_contig113997:16..2171622815654.158846-CDS-M-pyrifera_M_contig113997:16..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113997 17..217 -
1692277506.6516924-CDS-M-pyrifera_M_contig113997:16..2171692277506.6516924-CDS-M-pyrifera_M_contig113997:16..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113997 17..217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.1759593-UTR-M-pyrifera_M_contig113997:217..2231622815654.1759593-UTR-M-pyrifera_M_contig113997:217..223Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113997 218..223 -
1692277506.6629775-UTR-M-pyrifera_M_contig113997:217..2231692277506.6629775-UTR-M-pyrifera_M_contig113997:217..223Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113997 218..223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113997.2902.1prot_M-pyrifera_M_contig113997.2902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113997 17..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113997.2902.1

>prot_M-pyrifera_M_contig113997.2902.1 ID=prot_M-pyrifera_M_contig113997.2902.1|Name=mRNA_M-pyrifera_M_contig113997.2902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MSLVHDKVDSPRTAEEKIFFCRREDKMVDVWKGLVQYNFLSVPVIQKTKN
KYYGFVDLADIVTYVV*
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mRNA from alignment at M-pyrifera_M_contig113997:17..223-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113997.2902.1 ID=mRNA_M-pyrifera_M_contig113997.2902.1|Name=mRNA_M-pyrifera_M_contig113997.2902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig113997:17..223- (Macrocystis pyrifera P11B4 male)
TTTTTCATGAGTCTCGTGCACGACAAGGTCGACAGCCCGAGGACTGCAGA
GGAAAAGATCTTCTTCTGCAGGAGAGAGGACAAGATGGTGGACGTTTGGA
AGGGCCTCGTGCAGTACAACTTCCTCAGCGTTCCCGTCATCCAGAAGACA
AAGAACAAGTACTATGGCTTCGTGGACCTTGCAGACATCGTCACCTACGT
TGTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113997:17..223-

>mRNA_M-pyrifera_M_contig113997.2902.1 ID=mRNA_M-pyrifera_M_contig113997.2902.1|Name=mRNA_M-pyrifera_M_contig113997.2902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig113997:17..223- (Macrocystis pyrifera P11B4 male)
ATGAGTCTCGTGCACGACAAGGTCGACAGCCCGAGGACTGCAGAGGAAAA
GATCTTCTTCTGCAGGAGAGAGGACAAGATGGTGGACGTTTGGAAGGGCC
TCGTGCAGTACAACTTCCTCAGCGTTCCCGTCATCCAGAAGACAAAGAAC
AAGTACTATGGCTTCGTGGACCTTGCAGACATCGTCACCTACGTTGTGTA
GATGAGTCTCGTGCACGACAAGGTCGACAGCCCGAGGACTGCAGAGGAAA
AGATCTTCTTCTGCAGGAGAGAGGACAAGATGGTGGACGTTTGGAAGGGC
CTCGTGCAGTACAACTTCCTCAGCGTTCCCGTCATCCAGAAGACAAAGAA
CAAGTACTATGGCTTCGTGGACCTTGCAGACATCGTCACCTACGTTGTGT
AG
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