mRNA_M-pyrifera_M_contig113925.2895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113925.2895.1
Unique NamemRNA_M-pyrifera_M_contig113925.2895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5KAQ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.480e-24
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:  124 ANIAQTSAPVKEALIRALEKY--RHVFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            AN+ Q  A  K+ L+  L  +    +FP++PK V AC  ++L+LPL D  CTPHAAKQRR+SPEE  MI++E+ +    G IR S S WAA C+ V KKDGT R+C D+R LN
Sbjct:  124 ANMGQLGALQKQELVEVLATFVEEGLFPIDPKRVAACGGSELELPLIDEFCTPHAAKQRRFSPEERRMIRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLN 236
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BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.130e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:  124 ANIAQTSAPVKEALIRALEKY--RHVFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            AN+ Q  A  K+ L+  L  +    +FP++PK V AC   +L+LPL D  CTPHAAKQRR+SPEE  MI++E+ +    G IR S S WAA C+ V KKDGT R+C D+R LN
Sbjct:  266 ANMGQLGALQKQELVEVLATFVEEGLFPIDPKRVAACGGTELELPLIDEFCTPHAAKQRRFSPEERRMIRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLN 378
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BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5L7W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.240e-23
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:   91 GADADGVDLSLANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            GA    V +  AN+    +  K  L+  L  +    +FP++PK VPAC   +L+LPL +  CTP AAKQRR SPEE  MI++E+ +    G IR+S S WAA C+ V KKDGT R+C D+R LN
Sbjct:   42 GASVPRVRVEDANLGTLGSLKKHQLVNVLAAFIEDGLFPIDPKRVPACINGELELPLINEFCTPFAAKQRRVSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELN 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.940e-23
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:   91 GADADGVDLSLANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            GA    V +  AN+    +  K  L+  L  +    +FP++PK VPAC   +L+LPL +  CTP AAKQRR+SPEE  MI++E+ +    G IR+S S WAA C+ V KKDGT R+C D+R LN
Sbjct:   93 GASVPRVRVEDANLGTLGSLKKHQLVNVLAAFIEDGLFPIDPKRVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELN 216
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.410e-23
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:   91 GADADGVDLSLANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            GA    V +  AN+    +  K  L+  L  +    +FP++PK VPAC   +L+LPL +  CTP AAKQRR+SPEE  MI++E+ +    G IR+S S WAA C+ V KKDGT R+C D+R LN
Sbjct:   95 GASVPRVRVEDANLGTLGSLKKHQLVNVLAAFIEDGLFPIDPKRVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELN 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.800e-23
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:   91 GADADGVDLSLANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            GA    V +  AN+    +  K  L+  L  +    +FP++PK VPAC   +L+LPL +  CTP AAKQRR+SPEE  MI++E+ +    G IR+S S WAA C+ V KKDGT R+C D+R LN
Sbjct:  617 GASVPRVRVEDANLGTLGSLKKHQLVNVLAAFIEDGLFPIDPKRVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELN 740
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.830e-22
Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:  124 ANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            AN+    +  K  ++  L  +    +FP++PK VPAC   +L+LPL +  CTP AAKQRR SPEE  MI++E+ +    G IR+S SAWAA C+ V KKDGT R+C D+R LN
Sbjct:   29 ANLGTLGSLKKRQVVNVLAAFIEDGLFPIDPKRVPACINGELELPLINEFCTPFAAKQRRLSPEERRMIRAEIQQLVDRGVIRQSMSAWAAQCLCVKKKDGTLRLCIDWRELN 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 9.730e-22
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:   91 GADADGVDLSLANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            GA    V +  AN+    +  K  L+  L  +    +FP++PK VPAC   +L+LPL +  CTP AAKQRR+SPEE  MI++E+ +    G IR+  S WAA C  V KKDGT R+C D+R LN
Sbjct:  146 GASVPRVRVEDANLGTLGSLKKHQLVNVLAAFIEDGLFPIDPKRVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQPMSLWAAQCSCVKKKDGTLRLCIDWRELN 269
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5L7I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.750e-19
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:  124 ANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            AN+    +  K+ L+  L  +    +FP++PK VPAC   + +LPL +  CTP AAKQRR++P    MI++E+ +    G IR+S S WAA C+ V KKDGT R+C D+R LN
Sbjct:  125 ANLGTAGSLKKQQLVNVLAAFIEDGLFPLDPKRVPACINGEYELPLINEFCTPFAAKQRRFAPAGRRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELN 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.390e-18
Identity = 60/147 (40.82%), Postives = 83/147 (56.46%), Query Frame = 1 
Query:   25 AEGTSEMKEQSVLVTPEERAG-EGADADGVDLSLANIAQTSAPVKEALIRALEKYRH--VFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRYSPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRGLN 456
            A G      Q V+V P ER   E     GV  + AN+    +  ++ L   L  +    +FP++PK VPAC   +L+L L +  CTP AAKQR +SPEE  +I++E  + +  G IR+S S WAA C+ V KKD T R+C D+R LN
Sbjct:  823 AVGPQPQDRQLVMVLPTERLDLEQGAVVGVARADANLGTLGSLKQQQLGNVLAAFIEDGLFPIDPKRVPACINGELELLLINEFCTPFAAKQRLFSPEERRIIRAENQQLEDRGVIRQSMSPWAAQCLCVKKKDDTLRLCIDWRELN 969
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113925.2895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAQ6_9PHAE2.480e-2450.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBF4_9PHAE7.130e-2450.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W0_9PHAE1.240e-2345.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV6_9PHAE7.940e-2345.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE8.410e-2345.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE8.800e-2345.97RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KGF2_9PHAE6.830e-2247.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J659_9PHAE9.730e-2245.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7I8_9PHAE1.750e-1944.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY5_9PHAE2.390e-1840.82Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113925contigM-pyrifera_M_contig113925:120..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog7668.SPU_028383-tr
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs38F42@33154,3BHS6@33208,3E42R@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.8746636-CDS-M-pyrifera_M_contig113925:119..5751622815653.8746636-CDS-M-pyrifera_M_contig113925:119..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113925 120..575 +
1692277506.5447254-CDS-M-pyrifera_M_contig113925:119..5751692277506.5447254-CDS-M-pyrifera_M_contig113925:119..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113925 120..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113925.2895.1prot_M-pyrifera_M_contig113925.2895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113925 120..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113925.2895.1

>prot_M-pyrifera_M_contig113925.2895.1 ID=prot_M-pyrifera_M_contig113925.2895.1|Name=mRNA_M-pyrifera_M_contig113925.2895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MLLDPVVQAEGTSEMKEQSVLVTPEERAGEGADADGVDLSLANIAQTSAP
VKEALIRALEKYRHVFPVNPKIVPACNRAKLQLPLTDNSCTPHAAKQRRY
SPEETAMIQSEVAKQQKAGTIRRSQSAWAANCVVVAKKDGTARVCQDYRG
LN
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mRNA from alignment at M-pyrifera_M_contig113925:120..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113925.2895.1 ID=mRNA_M-pyrifera_M_contig113925.2895.1|Name=mRNA_M-pyrifera_M_contig113925.2895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig113925:120..575+ (Macrocystis pyrifera P11B4 male)
ATGCTATTAGACCCCGTCGTGCAGGCAGAAGGCACATCGGAGATGAAGGA
ACAGTCAGTGCTGGTGACGCCGGAGGAACGCGCAGGTGAGGGGGCGGACG
CCGACGGGGTAGACTTGTCGTTGGCCAACATCGCTCAGACGAGTGCCCCA
GTGAAGGAAGCCCTGATTCGAGCATTGGAGAAGTACCGCCATGTCTTCCC
GGTGAACCCGAAGATTGTCCCGGCCTGCAATCGAGCTAAGTTGCAGCTTC
CGCTGACTGACAACAGCTGCACGCCCCACGCAGCAAAACAGCGACGGTAT
TCGCCGGAGGAAACGGCCATGATCCAGAGCGAGGTGGCGAAGCAACAGAA
AGCGGGGACGATTCGCCGGTCGCAGTCAGCGTGGGCAGCAAACTGCGTCG
TTGTGGCAAAAAAGGATGGCACGGCGAGGGTCTGTCAGGATTATCGAGGG
CTGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113925:120..575+

>mRNA_M-pyrifera_M_contig113925.2895.1 ID=mRNA_M-pyrifera_M_contig113925.2895.1|Name=mRNA_M-pyrifera_M_contig113925.2895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig113925:120..575+ (Macrocystis pyrifera P11B4 male)
ATGCTATTAGACCCCGTCGTGCAGGCAGAAGGCACATCGGAGATGAAGGA
ACAGTCAGTGCTGGTGACGCCGGAGGAACGCGCAGGTGAGGGGGCGGACG
CCGACGGGGTAGACTTGTCGTTGGCCAACATCGCTCAGACGAGTGCCCCA
GTGAAGGAAGCCCTGATTCGAGCATTGGAGAAGTACCGCCATGTCTTCCC
GGTGAACCCGAAGATTGTCCCGGCCTGCAATCGAGCTAAGTTGCAGCTTC
CGCTGACTGACAACAGCTGCACGCCCCACGCAGCAAAACAGCGACGGTAT
TCGCCGGAGGAAACGGCCATGATCCAGAGCGAGGTGGCGAAGCAACAGAA
AGCGGGGACGATTCGCCGGTCGCAGTCAGCGTGGGCAGCAAACTGCGTCG
TTGTGGCAAAAAAGGATGGCACGGCGAGGGTCTGTCAGGATTATCGAGGG
CTGAACATGCTATTAGACCCCGTCGTGCAGGCAGAAGGCACATCGGAGAT
GAAGGAACAGTCAGTGCTGGTGACGCCGGAGGAACGCGCAGGTGAGGGGG
CGGACGCCGACGGGGTAGACTTGTCGTTGGCCAACATCGCTCAGACGAGT
GCCCCAGTGAAGGAAGCCCTGATTCGAGCATTGGAGAAGTACCGCCATGT
CTTCCCGGTGAACCCGAAGATTGTCCCGGCCTGCAATCGAGCTAAGTTGC
AGCTTCCGCTGACTGACAACAGCTGCACGCCCCACGCAGCAAAACAGCGA
CGGTATTCGCCGGAGGAAACGGCCATGATCCAGAGCGAGGTGGCGAAGCA
ACAGAAAGCGGGGACGATTCGCCGGTCGCAGTCAGCGTGGGCAGCAAACT
GCGTCGTTGTGGCAAAAAAGGATGGCACGGCGAGGGTCTGTCAGGATTAT
CGAGGGCTGAAC
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