mRNA_M-pyrifera_M_contig113919.2893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113919.2893.1
Unique NamemRNA_M-pyrifera_M_contig113919.2893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113919.2893.1 vs. uniprot
Match: A0A517PLL4_9PLAN (WD domain, G-beta repeat n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517PLL4_9PLAN)

HSP 1 Score: 390 bits (1002), Expect = 7.600e-125
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 1 
Query:    1 NVKFISCYQQPEIKIFETVSFTEVASLKLPADKPVKAHRVSNTGKYIAVALADQVELWEVATQSRIAEINIRAKETMVDKYDWRDFLQLVREVHFTADDSKLAFVRGGIYKKFNPGFWSPGALPHVVDVLYVWDLQQKKLIYTGQPFLPNINSIGFTENGLELLVSGTKWSLANRSPDYYPETVETHTIGL 573
            NVKFISCYQQPEIKIFETVSFTEVASLKLPADKPVKAHRVSNTGKYIAVALADQVELWEVATQSRIAEINIRAKETMVDKYDWRDFLQLVREVHFTADDSKLAFVRGGIYKKFNPGFWSPGALPHVVDVLYVWDLQQKKLIYTGQPFLPNINSIGFTENGLELLVSGTKWSLANRSPD YPETVETHTIGL
Sbjct:  654 NVKFISCYQQPEIKIFETVSFTEVASLKLPADKPVKAHRVSNTGKYIAVALADQVELWEVATQSRIAEINIRAKETMVDKYDWRDFLQLVREVHFTADDSKLAFVRGGIYKKFNPGFWSPGALPHVVDVLYVWDLQQKKLIYTGQPFLPNINSIGFTENGLELLVSGTKWSLANRSPDSYPETVETHTIGL 844
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BLAST of mRNA_M-pyrifera_M_contig113919.2893.1 vs. uniprot
Match: A6CCV9_9PLAN (WD-40 repeat n=2 Tax=Gimesia maris TaxID=122 RepID=A6CCV9_9PLAN)

HSP 1 Score: 269 bits (688), Expect = 2.290e-80
Identity = 124/191 (64.92%), Postives = 158/191 (82.72%), Query Frame = 1 
Query:    1 NVKFISCYQQPEIKIFETVSFTEVASLKLPADKPVKAHRVSNTGKYIAVALADQVELWEVATQSRIAEINIRAKETMVDKYDWRDFLQLVREVHFTADDSKLAFVRGGIYKKFNPGFWSPGALPHVVDVLYVWDLQQKKLIYTGQPFLPNINSIGFTENGLELLVSGTKWSLANRSPDYYPETVETHTIGL 573
              K+I+CYQ PEIK++ET SF+EVASLKLP  +PVK+HR+SNTGKY+ VA+A+QVE+W+VATQS++AEINIRA +T V +++WRDFLQ +RE+ F ADDS+LAFVRG + KKF PG+W+PGALPHVV+VLYVWDL+Q+KL+Y G PF PNIN+I FT+   ELL+SGT+WSL    P   PET ET +I L
Sbjct:  649 GAKYITCYQHPEIKVYETESFSEVASLKLPGTEPVKSHRISNTGKYLVVAVAEQVEIWDVATQSKLAEINIRAVQTKVYEFEWRDFLQHIREICFNADDSQLAFVRGVVIKKFRPGYWAPGALPHVVNVLYVWDLEQQKLVYQGIPFQPNINAIEFTDTENELLISGTEWSLVEFEPGARPETRETCSIKL 839
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113919.2893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517PLL4_9PLAN7.600e-12599.48WD domain, G-beta repeat n=8 Tax=Gimesia TaxID=164... [more]
A6CCV9_9PLAN2.290e-8064.92WD-40 repeat n=2 Tax=Gimesia maris TaxID=122 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113919contigM-pyrifera_M_contig113919:2..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score272.3
Seed ortholog evalue1.7e-70
Seed eggNOG ortholog344747.PM8797T_02219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anaphase-promoting complex binding
EggNOG OGsCOG2319@1,COG2319@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.7192376-CDS-M-pyrifera_M_contig113919:1..5741622815653.7192376-CDS-M-pyrifera_M_contig113919:1..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113919 2..574 -
1692277506.4744353-CDS-M-pyrifera_M_contig113919:1..5741692277506.4744353-CDS-M-pyrifera_M_contig113919:1..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113919 2..574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113919.2893.1prot_M-pyrifera_M_contig113919.2893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113919 2..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113919.2893.1

>prot_M-pyrifera_M_contig113919.2893.1 ID=prot_M-pyrifera_M_contig113919.2893.1|Name=mRNA_M-pyrifera_M_contig113919.2893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
NVKFISCYQQPEIKIFETVSFTEVASLKLPADKPVKAHRVSNTGKYIAVA
LADQVELWEVATQSRIAEINIRAKETMVDKYDWRDFLQLVREVHFTADDS
KLAFVRGGIYKKFNPGFWSPGALPHVVDVLYVWDLQQKKLIYTGQPFLPN
INSIGFTENGLELLVSGTKWSLANRSPDYYPETVETHTIGL
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mRNA from alignment at M-pyrifera_M_contig113919:2..574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113919.2893.1 ID=mRNA_M-pyrifera_M_contig113919.2893.1|Name=mRNA_M-pyrifera_M_contig113919.2893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig113919:2..574- (Macrocystis pyrifera P11B4 male)
AATGTGAAATTCATCAGTTGCTATCAGCAGCCTGAAATCAAAATCTTTGA
AACCGTATCATTTACCGAAGTTGCCAGTCTGAAGCTGCCCGCTGACAAGC
CCGTGAAAGCACATCGTGTTTCGAATACCGGCAAGTACATCGCAGTGGCA
CTGGCAGATCAGGTGGAACTCTGGGAAGTCGCTACGCAGAGCAGGATTGC
TGAAATCAACATTCGAGCTAAAGAAACGATGGTTGATAAATACGACTGGC
GGGATTTTCTACAGCTTGTCAGGGAAGTTCATTTTACCGCGGATGATAGT
AAGCTGGCCTTTGTGCGAGGTGGCATCTATAAGAAATTCAATCCGGGGTT
CTGGTCGCCCGGAGCACTGCCGCATGTGGTGGATGTTCTGTATGTCTGGG
ATTTGCAACAGAAAAAGCTGATTTATACGGGGCAGCCATTCCTGCCTAAC
ATCAATTCGATCGGATTTACCGAAAACGGATTGGAACTGCTGGTCTCCGG
AACGAAATGGAGTCTAGCTAACCGGAGTCCGGATTACTATCCGGAAACGG
TCGAAACCCACACGATCGGGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113919:2..574-

>mRNA_M-pyrifera_M_contig113919.2893.1 ID=mRNA_M-pyrifera_M_contig113919.2893.1|Name=mRNA_M-pyrifera_M_contig113919.2893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig113919:2..574- (Macrocystis pyrifera P11B4 male)
AATGTGAAATTCATCAGTTGCTATCAGCAGCCTGAAATCAAAATCTTTGA
AACCGTATCATTTACCGAAGTTGCCAGTCTGAAGCTGCCCGCTGACAAGC
CCGTGAAAGCACATCGTGTTTCGAATACCGGCAAGTACATCGCAGTGGCA
CTGGCAGATCAGGTGGAACTCTGGGAAGTCGCTACGCAGAGCAGGATTGC
TGAAATCAACATTCGAGCTAAAGAAACGATGGTTGATAAATACGACTGGC
GGGATTTTCTACAGCTTGTCAGGGAAGTTCATTTTACCGCGGATGATAGT
AAGCTGGCCTTTGTGCGAGGTGGCATCTATAAGAAATTCAATCCGGGGTT
CTGGTCGCCCGGAGCACTGCCGCATGTGGTGGATGTTCTGTATGTCTGGG
ATTTGCAACAGAAAAAGCTGATTTATACGGGGCAGCCATTCCTGCCTAAC
ATCAATTCGATCGGATTTACCGAAAACGGATTGGAACTGCTGGTCTCCGG
AACGAAATGGAGTCTAGCTAACCGGAGTCCGGATTACTATCCGGAAACGG
TCGAAACCCACACGATCGGGTTGAATGTGAAATTCATCAGTTGCTATCAG
CAGCCTGAAATCAAAATCTTTGAAACCGTATCATTTACCGAAGTTGCCAG
TCTGAAGCTGCCCGCTGACAAGCCCGTGAAAGCACATCGTGTTTCGAATA
CCGGCAAGTACATCGCAGTGGCACTGGCAGATCAGGTGGAACTCTGGGAA
GTCGCTACGCAGAGCAGGATTGCTGAAATCAACATTCGAGCTAAAGAAAC
GATGGTTGATAAATACGACTGGCGGGATTTTCTACAGCTTGTCAGGGAAG
TTCATTTTACCGCGGATGATAGTAAGCTGGCCTTTGTGCGAGGTGGCATC
TATAAGAAATTCAATCCGGGGTTCTGGTCGCCCGGAGCACTGCCGCATGT
GGTGGATGTTCTGTATGTCTGGGATTTGCAACAGAAAAAGCTGATTTATA
CGGGGCAGCCATTCCTGCCTAACATCAATTCGATCGGATTTACCGAAAAC
GGATTGGAACTGCTGGTCTCCGGAACGAAATGGAGTCTAGCTAACCGGAG
TCCGGATTACTATCCGGAAACGGTCGAAACCCACACGATCGGGTTG
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