mRNA_M-pyrifera_M_contig113890.2884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113890.2884.1
Unique NamemRNA_M-pyrifera_M_contig113890.2884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig113890.2884.1 vs. uniprot
Match: UPI0019CE9512 (DUF4965 domain-containing protein n=2 Tax=Fibrella sp. TaxID=1871320 RepID=UPI0019CE9512)

HSP 1 Score: 53.9 bits (128), Expect = 2.980e-5
Identity = 51/172 (29.65%), Postives = 86/172 (50.00%), Query Frame = 1 
Query:   22 KLTARDVTYIRFSIASLDAAPHEVQIYTDVTAEL-VTDSNSIPVFFNSTTPSTSPTILHMGASSPQPITSIGSADRVHYGSMYFSSSSPAASFSASLA-TDARIKFTVDGTLPPSSTLQNA-TVADGDPVLAIVTSFNLQAEQSSQ-SATLVLAQSLPVAIEYFGQSYPPLW 525
            ++ +R VTY+ +S+ SLD  PH+VQ+Y D  A+L V D+N+  V +N  +     T L MG+     +   G   R+ +G +Y ++ + A   S   +  +A+  +   G LP S  +    T  D  PV A+   FNL A  +   S T+++A     ++ + G+   P W
Sbjct:  145 EVLSRPVTYVTYSMRSLDGKPHDVQLYADAGADLTVNDANAQQVTWNRASAGNL-TALRMGSVDQPVLAKRGDDLRIDWGHLYLAAPNVAGLQSVLTSRANAQTVWGRTGKLPASDDVAKPRTPNDRSPVAALA--FNLGAVGAKPISRTVMIAYDDLYSLNWMGRKLRPYW 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig113890.2884.1 vs. uniprot
Match: B9XAZ7_PEDPL (Uncharacterized protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XAZ7_PEDPL)

HSP 1 Score: 52.8 bits (125), Expect = 7.510e-5
Identity = 49/172 (28.49%), Postives = 84/172 (48.84%), Query Frame = 1 
Query:   22 KLTARDVTYIRFSIASLDAAPHEVQIYTDVTAELVTDSNSIPVFFNSTTPSTSPTILHMGASSPQPITSIGSADRVHYGSMYFSSSSPAASFSASLATDARI--KFTVDGTLPPSSTLQNA-TVADGDPVLAIVTSFNL-QAEQSSQSATLVLAQSLPVAIEYFGQSYPPLW 525
            ++ AR VTY+ +S+ S+D + H+VQIY   +++LV +     V + +   +   T+L +G      + S G   R+++G  Y ++  PAA   +S+ +   +   F  +G LP     +    V D  P LA V  FNL +         +++A     +I+YFGQ   P W
Sbjct:  137 EVLARPVTYLTWSVHSVDGSKHKVQIYDSTSSQLVVNQEQEQVTW-AREQAGDLTLLKVGTEEQPVLRSSGDDHRINWGYAYVAA--PAAQSKSSMGSGETMARSFARNGDLPDEDIKKMPRAVHDQQPALAFV--FNLGEVAAKPIMRQVMIAYDEVYSIKYFGQKLQPYW 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113890.2884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0019CE95122.980e-529.65DUF4965 domain-containing protein n=2 Tax=Fibrella... [more]
B9XAZ7_PEDPL7.510e-528.49Uncharacterized protein n=1 Tax=Pedosphaera parvul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113890contigM-pyrifera_M_contig113890:36..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.1
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog192875.XP_004365367.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF5127)
EggNOG OGs2CM9S@1,2QPQS@2759,38I1R@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.3059647-CDS-M-pyrifera_M_contig113890:35..5631622815653.3059647-CDS-M-pyrifera_M_contig113890:35..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113890 36..563 -
1692277506.3114061-CDS-M-pyrifera_M_contig113890:35..5631692277506.3114061-CDS-M-pyrifera_M_contig113890:35..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113890 36..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113890.2884.1prot_M-pyrifera_M_contig113890.2884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113890 36..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113890.2884.1

>prot_M-pyrifera_M_contig113890.2884.1 ID=prot_M-pyrifera_M_contig113890.2884.1|Name=mRNA_M-pyrifera_M_contig113890.2884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
PGTTQGDKLTARDVTYIRFSIASLDAAPHEVQIYTDVTAELVTDSNSIPV
FFNSTTPSTSPTILHMGASSPQPITSIGSADRVHYGSMYFSSSSPAASFS
ASLATDARIKFTVDGTLPPSSTLQNATVADGDPVLAIVTSFNLQAEQSSQ
SATLVLAQSLPVAIEYFGQSYPPLWT
back to top

mRNA from alignment at M-pyrifera_M_contig113890:36..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113890.2884.1 ID=mRNA_M-pyrifera_M_contig113890.2884.1|Name=mRNA_M-pyrifera_M_contig113890.2884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig113890:36..563- (Macrocystis pyrifera P11B4 male)
CCAGGAACAACACAAGGTGACAAGCTCACAGCAAGAGATGTGACTTACAT
CCGCTTCTCTATCGCTTCCCTTGACGCAGCACCACATGAAGTCCAAATCT
ACACAGACGTCACCGCAGAACTTGTCACCGATTCCAACTCCATCCCAGTC
TTTTTCAACTCCACCACCCCTTCCACCTCCCCTACAATCCTTCACATGGG
GGCGTCGTCACCACAACCTATCACTTCCATTGGGTCTGCTGATAGAGTGC
ATTACGGATCCATGTACTTCTCCTCCTCATCCCCTGCGGCTTCGTTCTCA
GCCTCACTTGCCACGGATGCGAGAATTAAGTTCACCGTTGATGGCACCTT
ACCCCCAAGTTCTACACTTCAGAACGCTACTGTTGCTGATGGAGACCCAG
TGCTTGCTATTGTGACTTCATTCAACCTCCAAGCAGAGCAATCGTCTCAA
TCTGCGACTCTTGTCTTGGCACAATCATTGCCAGTTGCAATTGAATACTT
TGGACAATCCTACCCACCATTGTGGACA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113890:36..563-

>mRNA_M-pyrifera_M_contig113890.2884.1 ID=mRNA_M-pyrifera_M_contig113890.2884.1|Name=mRNA_M-pyrifera_M_contig113890.2884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig113890:36..563- (Macrocystis pyrifera P11B4 male)
CCAGGAACAACACAAGGTGACAAGCTCACAGCAAGAGATGTGACTTACAT
CCGCTTCTCTATCGCTTCCCTTGACGCAGCACCACATGAAGTCCAAATCT
ACACAGACGTCACCGCAGAACTTGTCACCGATTCCAACTCCATCCCAGTC
TTTTTCAACTCCACCACCCCTTCCACCTCCCCTACAATCCTTCACATGGG
GGCGTCGTCACCACAACCTATCACTTCCATTGGGTCTGCTGATAGAGTGC
ATTACGGATCCATGTACTTCTCCTCCTCATCCCCTGCGGCTTCGTTCTCA
GCCTCACTTGCCACGGATGCGAGAATTAAGTTCACCGTTGATGGCACCTT
ACCCCCAAGTTCTACACTTCAGAACGCTACTGTTGCTGATGGAGACCCAG
TGCTTGCTATTGTGACTTCATTCAACCTCCAAGCAGAGCAATCGTCTCAA
TCTGCGACTCTTGTCTTGGCACAATCATTGCCAGTTGCAATTGAATACTT
TGGACAATCCTACCCACCATTGTGGACACCAGGAACAACACAAGGTGACA
AGCTCACAGCAAGAGATGTGACTTACATCCGCTTCTCTATCGCTTCCCTT
GACGCAGCACCACATGAAGTCCAAATCTACACAGACGTCACCGCAGAACT
TGTCACCGATTCCAACTCCATCCCAGTCTTTTTCAACTCCACCACCCCTT
CCACCTCCCCTACAATCCTTCACATGGGGGCGTCGTCACCACAACCTATC
ACTTCCATTGGGTCTGCTGATAGAGTGCATTACGGATCCATGTACTTCTC
CTCCTCATCCCCTGCGGCTTCGTTCTCAGCCTCACTTGCCACGGATGCGA
GAATTAAGTTCACCGTTGATGGCACCTTACCCCCAAGTTCTACACTTCAG
AACGCTACTGTTGCTGATGGAGACCCAGTGCTTGCTATTGTGACTTCATT
CAACCTCCAAGCAGAGCAATCGTCTCAATCTGCGACTCTTGTCTTGGCAC
AATCATTGCCAGTTGCAATTGAATACTTTGGACAATCCTACCCACCATTG
TGGACA
back to top