mRNA_M-pyrifera_M_contig101351.287.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101351.287.1
Unique NamemRNA_M-pyrifera_M_contig101351.287.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A2E7K6Z7_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K6Z7_9PLAN)

HSP 1 Score: 273 bits (699), Expect = 8.810e-93
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 1
Query:    1 ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTPQRAP 417
            ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAE+DRKLLFQKLDPQESQASQ QFKITTTPQ+AP
Sbjct:   10 ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAEIDRKLLFQKLDPQESQASQAQFKITTTPQQAP 148          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A518A341_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A341_9PLAN)

HSP 1 Score: 238 bits (608), Expect = 4.570e-79
Identity = 114/133 (85.71%), Postives = 127/133 (95.49%), Query Frame = 1
Query:    7 LAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTP 405
            +AA+ LL+ACQQ+DEEFL+GRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQES+PATMIMDMR SEINAVLYFDY+AFSPKHFQLTPTYVQRTGEKK+ ++L RKLLFQKLDPQ+ Q SQ+QFKI+TTP
Sbjct:    1 MAAVCLLTACQQADEEFLIGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESSPATMIMDMRRSEINAVLYFDYKAFSPKHFQLTPTYVQRTGEKKKPSDLKRKLLFQKLDPQDPQMSQSQFKISTTP 133          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A518I8R0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I8R0_9PLAN)

HSP 1 Score: 187 bits (475), Expect = 1.240e-58
Identity = 88/135 (65.19%), Postives = 111/135 (82.22%), Query Frame = 1
Query:    1 ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTP 405
            +LLA + + S+CQQS+ E LVGRW S+GGPNMIF +DGTVYSINRGPRRKGRYYL+ E+ PAT+IMDMR S+INAVLYFDY AFS +H +LTPT+VQRTGEKK+ +E+ RK+LF+K+DP +    + +F   TTP
Sbjct:   10 LLLALVCVSSSCQQSEHENLVGRWQSTGGPNMIFREDGTVYSINRGPRRKGRYYLNTETEPATIIMDMRKSDINAVLYFDYAAFSDRHIELTPTFVQRTGEKKKESEIKRKMLFRKIDPNDPLMGEKRFAAKTTP 144          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A517RC89_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RC89_9PLAN)

HSP 1 Score: 174 bits (440), Expect = 2.470e-53
Identity = 78/135 (57.78%), Postives = 107/135 (79.26%), Query Frame = 1
Query:    1 ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTP 405
            +LL  + + S+CQQS+ E L+GRW +S GPNMIF +DGTV+SIN GPR+KGRYYL+ ES P+T++MDMR S INAVLYFD+  FS +H +LTPT++QRTGEKK+ +E+ RK+LF+K+DP +    + +F + TTP
Sbjct:   10 LLLILVCVSSSCQQSEHENLIGRWQNSNGPNMIFREDGTVFSINNGPRQKGRYYLNTESKPSTIVMDMRKSNINAVLYFDFTPFSARHIELTPTHIQRTGEKKKESEIKRKMLFRKIDPNDPLLGEKRFTVKTTP 144          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A517VBT2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VBT2_9PLAN)

HSP 1 Score: 173 bits (438), Expect = 5.640e-53
Identity = 79/139 (56.83%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTPQRAP 417
            +LL+ + L S+CQ+S+ + LVGRW +S GPNMIF KDG+VYS+++G RRKG YYLD E+ P  M++DMR +EINAVL+FD+ AFS KHF+LTPTYVQRTG +K +++L RKLLFQK+DP +      +F    TP   P
Sbjct:   13 VLLSLVCLASSCQKSERDLLVGRWQNSSGPNMIFNKDGSVYSVHQGQRRKGAYYLDMETKPKQMVLDMRKTEINAVLFFDFNAFSEKHFELTPTYVQRTGGRKRKSDLSRKLLFQKIDPNDPTMGINRFSAEATPTETP 151          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A355GL91_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GL91_9PLAN)

HSP 1 Score: 172 bits (437), Expect = 8.010e-53
Identity = 80/137 (58.39%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    7 LAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTPQRAP 417
            L+   L S+CQ+S+ + LVGRW +S GPNMIF +DG+VYS+++G RRKG YYLD ES P  M++DMR +EINAVLYFD++AFS KH QLTPTYVQRTG KK ++++ RKLLFQK+DP +     + F   TTP   P
Sbjct:   15 LSLTCLASSCQKSERDLLVGRWQNSSGPNMIFNEDGSVYSVHQGKRRKGAYYLDTESKPQQMVLDMRNTEINAVLYFDFDAFSDKHMQLTPTYVQRTGNKKVKSDITRKLLFQKVDPNDPLMGVSSFSAKTTPSETP 151          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A6CDG8_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CDG8_9PLAN)

HSP 1 Score: 165 bits (417), Expect = 8.800e-50
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 1
Query:    4 LLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDPQESQASQTQFKITTTPQRAP 417
            LL+ + L S+CQ+S+ + L+GRW +S GPNMIF +DG+VYS++ G RRKG +YLD ES+P  M++DMR +EINAVL+FD+ AFS KH +LTPTYVQRTG  K+++ + RKLLFQK+DP +     ++F    TP  AP
Sbjct:   14 LLSLVCLASSCQKSERDLLIGRWQNSSGPNMIFNRDGSVYSVHLGKRRKGAFYLDTESDPQQMVLDMRKTEINAVLFFDFHAFSEKHLELTPTYVQRTGGPKKKSNVTRKLLFQKIDPNDPLMGASRFSAKATPTVAP 151          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: A0A517X1T2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1T2_9PLAN)

HSP 1 Score: 149 bits (375), Expect = 2.050e-43
Identity = 69/120 (57.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRR-KGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTGEKKERAELDRKLLFQKLDP 357
            +LL  + + S+CQ+S+   L+GRW S GGPNMIF++DG VY+IN+G RR KG YYL+ E+ P T+IMDMR S++ ++LYFDY AFS KH +LTPT+++R GE K+ +E  RKLLFQK+DP
Sbjct:   10 LLLVVVCITSSCQKSERANLIGRWTSRGGPNMIFQEDGIVYTINKGDRRQKGIYYLNTETKPQTIIMDMRKSDLKSILYFDYAAFSSKHIELTPTHLKRVGENKKESERKRKLLFQKVDP 129          
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Match: UPI0012D3786E (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI0012D3786E)

HSP 1 Score: 141 bits (356), Expect = 6.120e-41
Identity = 61/99 (61.62%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    4 LLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRKGRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTG 300
            LL+ + L S+CQ+S+ + L+GRW +S GPNMIF +DG+VYS++ G RRKG +YLD ES+P  M++DMR +EINAVL+FD+ AFS KH +LTPTYVQRTG
Sbjct:   14 LLSLVCLASSCQKSERDLLIGRWQNSSGPNMIFNRDGSVYSVHLGKRRKGAFYLDTESDPQQMVLDMRKTEINAVLFFDFHAFSEKHLELTPTYVQRTG 112          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101351.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7K6Z7_9PLAN8.810e-9397.84Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A341_9PLAN4.570e-7985.71Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518I8R0_9PLAN1.240e-5865.19Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517RC89_9PLAN2.470e-5357.78Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A517VBT2_9PLAN5.640e-5356.83Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A355GL91_9PLAN8.010e-5358.39Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A6CDG8_9PLAN8.800e-5055.07Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A517X1T2_9PLAN2.050e-4357.50Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
UPI0012D3786E6.120e-4161.62hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101351contigM-pyrifera_M_contig101351:251..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.4305305-CDS-M-pyrifera_M_contig101351:250..6701622815511.4305305-CDS-M-pyrifera_M_contig101351:250..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101351 251..670 -
1692277444.45581-CDS-M-pyrifera_M_contig101351:250..6701692277444.45581-CDS-M-pyrifera_M_contig101351:250..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101351 251..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101351.287.1prot_M-pyrifera_M_contig101351.287.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101351 251..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101351.287.1

>prot_M-pyrifera_M_contig101351.287.1 ID=prot_M-pyrifera_M_contig101351.287.1|Name=mRNA_M-pyrifera_M_contig101351.287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
ILLAAISLLSACQQSDEEFLVGRWHSSGGPNMIFEKDGTVYSINRGPRRK
GRYYLDQESNPATMIMDMRGSEINAVLYFDYEAFSPKHFQLTPTYVQRTG
EKKERAELDRKLLFQKLDPQESQASQTQFKITTTPQRAP*
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mRNA from alignment at M-pyrifera_M_contig101351:251..670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101351.287.1 ID=mRNA_M-pyrifera_M_contig101351.287.1|Name=mRNA_M-pyrifera_M_contig101351.287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig101351:251..670- (Macrocystis pyrifera P11B4 male)
ATCTTACTGGCAGCCATCAGCCTGTTATCTGCCTGCCAGCAATCAGATGA AGAGTTTCTGGTCGGGCGCTGGCACAGCTCCGGCGGTCCCAACATGATTT TTGAGAAGGATGGAACGGTCTACAGTATTAACCGTGGACCACGGCGAAAG GGACGCTATTACCTGGACCAGGAATCAAACCCGGCAACCATGATCATGGA CATGCGAGGGTCAGAGATTAACGCCGTACTGTACTTCGATTATGAGGCGT TTTCACCGAAGCACTTCCAGTTAACCCCAACCTACGTGCAGCGAACCGGG GAGAAAAAAGAGCGTGCTGAACTCGATCGCAAGCTGTTGTTCCAGAAACT GGATCCACAGGAGTCCCAAGCAAGCCAGACTCAGTTCAAGATCACCACAA CGCCACAACGGGCCCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101351:251..670-

>mRNA_M-pyrifera_M_contig101351.287.1 ID=mRNA_M-pyrifera_M_contig101351.287.1|Name=mRNA_M-pyrifera_M_contig101351.287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig101351:251..670- (Macrocystis pyrifera P11B4 male)
ATCTTACTGGCAGCCATCAGCCTGTTATCTGCCTGCCAGCAATCAGATGA
AGAGTTTCTGGTCGGGCGCTGGCACAGCTCCGGCGGTCCCAACATGATTT
TTGAGAAGGATGGAACGGTCTACAGTATTAACCGTGGACCACGGCGAAAG
GGACGCTATTACCTGGACCAGGAATCAAACCCGGCAACCATGATCATGGA
CATGCGAGGGTCAGAGATTAACGCCGTACTGTACTTCGATTATGAGGCGT
TTTCACCGAAGCACTTCCAGTTAACCCCAACCTACGTGCAGCGAACCGGG
GAGAAAAAAGAGCGTGCTGAACTCGATCGCAAGCTGTTGTTCCAGAAACT
GGATCCACAGGAGTCCCAAGCAAGCCAGACTCAGTTCAAGATCACCACAA
CGCCACAACGGGCCCCCTGAATCTTACTGGCAGCCATCAGCCTGTTATCT
GCCTGCCAGCAATCAGATGAAGAGTTTCTGGTCGGGCGCTGGCACAGCTC
CGGCGGTCCCAACATGATTTTTGAGAAGGATGGAACGGTCTACAGTATTA
ACCGTGGACCACGGCGAAAGGGACGCTATTACCTGGACCAGGAATCAAAC
CCGGCAACCATGATCATGGACATGCGAGGGTCAGAGATTAACGCCGTACT
GTACTTCGATTATGAGGCGTTTTCACCGAAGCACTTCCAGTTAACCCCAA
CCTACGTGCAGCGAACCGGGGAGAAAAAAGAGCGTGCTGAACTCGATCGC
AAGCTGTTGTTCCAGAAACTGGATCCACAGGAGTCCCAAGCAAGCCAGAC
TCAGTTCAAGATCACCACAACGCCACAACGGGCCCCCTGA
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