mRNA_M-pyrifera_M_contig113836.2867.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113836.2867.1
Unique NamemRNA_M-pyrifera_M_contig113836.2867.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113836.2867.1 vs. uniprot
Match: A0A2P6NLZ4_9EUKA (Activating signal cointegrator 1 complex subunit 2-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NLZ4_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 2.370e-7
Identity = 49/170 (28.82%), Postives = 86/170 (50.59%), Query Frame = 1 
Query:   10 ETVKDLDRRWIGDLSFFEYLPS-------DNSSLQSLETLKYLNNDLRELLLAPYHVFWSYVLLDKSFSLFLDSFLRYFDEPSLPLPDLQRAELGSLDAAGLKGALFQRVFLVVCRMSQMEEAPHLFISSSFYTQEVAKNHLLDLPKLIDFTRLYGCHNRQKVAPTLKFL 498
            +TV DL ++ I  L F  Y+ +       D S++  L  ++ +N DL  LL   Y  FW  ++ D+SF +FLD+FLRY      P     + E    D    +  L +R + ++ R+ Q +E     ++  ++ + V  +HLL++P LID   LYG  + + ++  ++ L
Sbjct:  103 QTVLDLSKK-IPSLDFLPYVITAQTNEAFDTSTISEL--IQNINLDLSSLLKTDYVTFWHQIISDRSFHMFLDTFLRY-----CPRVWSTKGEAFLNDYEHKQ--LTKRAYALIVRILQHQEDVDHHMNKEYHAKLV-HDHLLNVPSLIDICSLYGSVDTESLSTMMEDL 261
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BLAST of mRNA_M-pyrifera_M_contig113836.2867.1 vs. uniprot
Match: A0A7S3WKY5_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WKY5_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 1.130e-5
Identity = 50/160 (31.25%), Postives = 71/160 (44.38%), Query Frame = 1 
Query:    7 IETVKDLDRRWIGD-LSFFEYLPSDNSSLQSLE--TLKYLNNDLRELLLAPYHVFWSYVLLDKSFSLFLDSFLRYFDEP---SLPLPDLQRAELGSLDAAGLKGALFQRVFLVVCRMSQME-EAPHLFISSSFYTQEVAKNHLLDLPKLIDFTRLYGCHN 465
            +  V  +D  W    L    YLP D      LE   L+     L +LL AP HVFWS +L D+S S FLD  LR+       S P  D         D +  +G L   +  V+ R++  E +     +  + ++  V    LLD PKL+D + L+G  N
Sbjct:   28 VRRVNAIDEHWASPPLDLPPYLPPDADEAAPLEPEALEASVRALEQLLRAPMHVFWSRLLHDRSLSDFLDGVLRFSPRGFGRSAPRAD-------EADGSPGEGQLRACLLRVLLRLASPEKDGGAAALPPADWSSLVYDRWLLDAPKLLDASALFGFSN 180
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BLAST of mRNA_M-pyrifera_M_contig113836.2867.1 vs. uniprot
Match: R1DKB7_EMIHU (SAM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKB7_EMIHU)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-5
Identity = 53/166 (31.93%), Postives = 72/166 (43.37%), Query Frame = 1 
Query:    7 IETVKDLDRRWIGD-LSFFEYLPSDNSSLQSLE--TLKYLNNDLRELLLAPYHVFWSYVLLDKSFSLFLDSFLRYFDEP---SLPLPDLQRAELGSLDAAGLKGALFQRVFLVVCRMSQMEE-------APHLFISSSFYTQEVAKNHLLDLPKLIDFTRLYGCHN 465
            +  V  +D  W    L    YLP D      LE   L+     L +LL AP HVFWS +L D+S S FLD  LR+       S P  D         D +  +G L   +  V+ R++  E+        P  + S S  +  V    LLD PKL+D + L+G  N
Sbjct:   20 VRRVNAIDEHWTSPPLDLPPYLPPDADEAAPLEPEALEASVRALEQLLRAPMHVFWSRLLHDRSLSEFLDGVLRFSPRGFGRSAPRAD-------EADGSPGEGQLRACLLRVLLRLASPEKDGGAAALPPADWRSHSRESSLVYDRWLLDAPKLLDASALFGFSN 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113836.2867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2P6NLZ4_9EUKA2.370e-728.82Activating signal cointegrator 1 complex subunit 2... [more]
A0A7S3WKY5_EMIHU1.130e-531.25Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
R1DKB7_EMIHU1.190e-531.93SAM domain-containing protein n=1 Tax=Emiliania hu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113836contigM-pyrifera_M_contig113836:14..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog5786.XP_003286894.1
KEGG koko:K18667
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CUE domain
EggNOG OGs3XETY@554915,KOG4501@1,KOG4501@2759
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.5341537-CDS-M-pyrifera_M_contig113836:13..5501622815652.5341537-CDS-M-pyrifera_M_contig113836:13..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113836 14..550 +
1692277505.993553-CDS-M-pyrifera_M_contig113836:13..5501692277505.993553-CDS-M-pyrifera_M_contig113836:13..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113836 14..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113836.2867.1prot_M-pyrifera_M_contig113836.2867.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113836 14..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113836.2867.1

>prot_M-pyrifera_M_contig113836.2867.1 ID=prot_M-pyrifera_M_contig113836.2867.1|Name=mRNA_M-pyrifera_M_contig113836.2867.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
GEIETVKDLDRRWIGDLSFFEYLPSDNSSLQSLETLKYLNNDLRELLLAP
YHVFWSYVLLDKSFSLFLDSFLRYFDEPSLPLPDLQRAELGSLDAAGLKG
ALFQRVFLVVCRMSQMEEAPHLFISSSFYTQEVAKNHLLDLPKLIDFTRL
YGCHNRQKVAPTLKFLFYQLPRLKKSPEE
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mRNA from alignment at M-pyrifera_M_contig113836:14..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113836.2867.1 ID=mRNA_M-pyrifera_M_contig113836.2867.1|Name=mRNA_M-pyrifera_M_contig113836.2867.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig113836:14..550+ (Macrocystis pyrifera P11B4 male)
GGAGAGATAGAGACAGTCAAAGACCTCGACAGGAGGTGGATTGGCGACCT
CTCGTTCTTTGAATACCTCCCGAGCGATAATTCATCTTTGCAGTCGCTGG
AGACGCTCAAATACCTCAACAACGACCTCCGCGAGCTTCTCTTGGCACCA
TACCACGTATTTTGGAGCTATGTTCTGCTCGACAAGTCATTTTCTTTGTT
CCTTGACTCGTTCCTTCGTTACTTTGACGAGCCATCGCTCCCTCTTCCCG
ACCTGCAGCGCGCAGAGCTCGGTTCGCTTGATGCAGCCGGCCTCAAAGGA
GCCCTCTTTCAGAGGGTGTTCCTTGTGGTGTGCAGAATGTCACAGATGGA
GGAAGCCCCCCATTTGTTCATATCGAGCAGCTTCTACACGCAAGAGGTAG
CCAAGAACCATCTGCTTGACCTCCCGAAGCTCATCGACTTCACTCGCCTT
TACGGCTGCCACAACCGCCAGAAAGTGGCCCCAACCCTGAAGTTCCTTTT
CTACCAACTGCCCCGGCTGAAGAAGAGCCCGGAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113836:14..550+

>mRNA_M-pyrifera_M_contig113836.2867.1 ID=mRNA_M-pyrifera_M_contig113836.2867.1|Name=mRNA_M-pyrifera_M_contig113836.2867.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig113836:14..550+ (Macrocystis pyrifera P11B4 male)
GGAGAGATAGAGACAGTCAAAGACCTCGACAGGAGGTGGATTGGCGACCT
CTCGTTCTTTGAATACCTCCCGAGCGATAATTCATCTTTGCAGTCGCTGG
AGACGCTCAAATACCTCAACAACGACCTCCGCGAGCTTCTCTTGGCACCA
TACCACGTATTTTGGAGCTATGTTCTGCTCGACAAGTCATTTTCTTTGTT
CCTTGACTCGTTCCTTCGTTACTTTGACGAGCCATCGCTCCCTCTTCCCG
ACCTGCAGCGCGCAGAGCTCGGTTCGCTTGATGCAGCCGGCCTCAAAGGA
GCCCTCTTTCAGAGGGTGTTCCTTGTGGTGTGCAGAATGTCACAGATGGA
GGAAGCCCCCCATTTGTTCATATCGAGCAGCTTCTACACGCAAGAGGTAG
CCAAGAACCATCTGCTTGACCTCCCGAAGCTCATCGACTTCACTCGCCTT
TACGGCTGCCACAACCGCCAGAAAGTGGCCCCAACCCTGAAGTTCCTTTT
CTACCAACTGCCCCGGCTGAAGAAGAGCCCGGAAGAGGGAGAGATAGAGA
CAGTCAAAGACCTCGACAGGAGGTGGATTGGCGACCTCTCGTTCTTTGAA
TACCTCCCGAGCGATAATTCATCTTTGCAGTCGCTGGAGACGCTCAAATA
CCTCAACAACGACCTCCGCGAGCTTCTCTTGGCACCATACCACGTATTTT
GGAGCTATGTTCTGCTCGACAAGTCATTTTCTTTGTTCCTTGACTCGTTC
CTTCGTTACTTTGACGAGCCATCGCTCCCTCTTCCCGACCTGCAGCGCGC
AGAGCTCGGTTCGCTTGATGCAGCCGGCCTCAAAGGAGCCCTCTTTCAGA
GGGTGTTCCTTGTGGTGTGCAGAATGTCACAGATGGAGGAAGCCCCCCAT
TTGTTCATATCGAGCAGCTTCTACACGCAAGAGGTAGCCAAGAACCATCT
GCTTGACCTCCCGAAGCTCATCGACTTCACTCGCCTTTACGGCTGCCACA
ACCGCCAGAAAGTGGCCCCAACCCTGAAGTTCCTTTTCTACCAACTGCCC
CGGCTGAAGAAGAGCCCGGAAGAG
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