mRNA_M-pyrifera_M_contig113816.2862.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113816.2862.1
Unique NamemRNA_M-pyrifera_M_contig113816.2862.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A7S4HL09_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HL09_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 1.560e-40
Identity = 88/155 (56.77%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   37 REERRELELT-NAVITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFAS-SVQGRKLHLHQVKIVKDQTRVDDK-GKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRK 492
            +E++R L L    VIT QDEA+  MSK DL KRQRA  EKK KL+NPNFFVS+TRLS+RN+P++  +  L+ +F   S  G  L   QVKIV++  R D   GKA+S+G+GFVEF  H DAL ALRALNN+PKI++ Q RPIVEFA+ENA+ ++K
Sbjct:  125 KEDKRNLYLAYEGVITEQDEASNDMSKADLAKRQRALIEKKNKLQNPNFFVSKTRLSIRNIPKDYDDKDLRALFKKHSPPGATLK--QVKIVRETNRTDSSTGKARSRGFGFVEFIDHSDALEALRALNNNPKIWKKQERPIVEFAVENAKALQK 277          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: UPI0009E4F466 (RNA-binding protein 28-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4F466)

HSP 1 Score: 149 bits (376), Expect = 1.530e-38
Identity = 82/153 (53.59%), Postives = 112/153 (73.20%), Query Frame = 1
Query:   34 EREERRELELTN-AVITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLHLHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMR 489
            E +++R L L    +I     AA+G+SK DL KRQ+A  EKK KL+NPN+FVS+TRL VRN+  NV + +LKEIF+++  GR+ H+ +V I++ + R+D  G+ +S GYGFVEF  H DALAALRA NN+P IF A RRPIVEFALEN+ +++
Sbjct: 1038 EAKDKRNLYLAKEGLILPGSTAAEGLSKADLLKRQKAEKEKKVKLENPNYFVSQTRLCVRNLALNVDDKKLKEIFSTAA-GRRSHVQKVLIIRSKDRLDSSGRGRSMGYGFVEFANHKDALAALRATNNNPAIFGADRRPIVEFALENSLVLK 1189          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A7S0CRV9_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CRV9_MICPS)

HSP 1 Score: 137 bits (344), Expect = 3.800e-37
Identity = 75/138 (54.35%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   94 AAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLH-----LHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRK 492
            AA+G+S+ D++KR+RA +E+  KLKNPNFF+S+TRL VRNVP  + + QLK +F  +V+ R        LH  K++ D TR D+ GK +S+G GFVEF +H  ALAALRALNN+P  F  QRRPIVEFA+E+A+ +RK
Sbjct:   88 AARGVSQTDIQKRRRAREEQAMKLKNPNFFISKTRLQVRNVPLEMDQKQLKRVFFDAVKQRATQANPRVLH-AKLLFDPTRPDENGKPRSRGIGFVEFAEHEHALAALRALNNNPATFTPQRRPIVEFAVEDARAVRK 224          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A1Y5I107_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I107_OSTTA)

HSP 1 Score: 142 bits (357), Expect = 5.160e-36
Identity = 76/137 (55.47%), Postives = 99/137 (72.26%), Query Frame = 1
Query:   94 AAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLH----LHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRK 492
            AA G+SK D+EKR+RA +E++ KLKNPNFFVSRTRLSVRN+P  +    LK++F  +VQ R  H    +   K++ D  R+D+ GK K+KG GFVEF +H  AL ALRALNN+P  F   RRPIVEFA+E+A+ +RK
Sbjct:  607 AADGVSKSDIEKRRRANEERQLKLKNPNFFVSRTRLSVRNIPPEMDSKTLKKMFIEAVQKRATHAAPKVMHAKLLYDSERMDENGKPKNKGIGFVEFSEHEHALTALRALNNNPDAFTRARRPIVEFAIEDARAVRK 743          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A7D9DWU5_PARCT (RNA-binding 28-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DWU5_PARCT)

HSP 1 Score: 136 bits (343), Expect = 5.660e-36
Identity = 74/154 (48.05%), Postives = 104/154 (67.53%), Query Frame = 1
Query:   31 TEREERRELELTNAVITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLHLHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRK 492
            T R++R        VI    EAA G+SK DL+KRQ+A +EKK KLK P+F VS+TRL  RN+P ++ + +L E+  +   G+   + +V+I+++  RVD  G  +SKG+GF EFK H DAL  LRA NN+P IF A RRPIVEFA+EN+ I+++
Sbjct:   30 TPRDKRNLYLAKEGVIMPGTEAAAGLSKSDLQKRQKAEEEKKVKLKMPHFIVSKTRLCFRNLPLHIDDKKLSEVLRTVCDGKPKTVGKVRIMRNMERVDSSGLGRSKGFGFAEFKGHDDALDVLRATNNNPAIFGADRRPIVEFAIENSLILQR 183          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A2B4SW49_STYPI (RNA-binding protein 28 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SW49_STYPI)

HSP 1 Score: 141 bits (355), Expect = 9.590e-36
Identity = 72/139 (51.80%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   73 VITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLHLHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMR 489
            +ITS  EAA+G+SK DL KRQ+A  EKK KL+NPN FVS TRL VRN+P NV + +L+EIF ++  G+++ + +V I++ + R+D  G+ +S GYGF+EF  H DALAALR  NN+P +F   RRPIV+F++EN  +++
Sbjct:  534 LITSGSEAARGLSKADLLKRQKAEAEKKTKLENPNNFVSTTRLCVRNLPLNVDDKKLQEIFGTAT-GKRVRVKKVLIIRSKERLDSAGRGRSMGYGFIEFTNHKDALAALRVTNNNPALFGPDRRPIVDFSIENGLVLK 671          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: T2M3Z4_HYDVU (RNA-binding protein 28 n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3Z4_HYDVU)

HSP 1 Score: 139 bits (349), Expect = 6.240e-35
Identity = 72/139 (51.80%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   73 VITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLHLHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMR 489
            +IT    AA+G+S  DL+KR++A  EKKAKLKNPN+FVSRTRLSVRN+P N++  +LK+ F  +V+   + ++ VKI+  + R D KG  +S G+GF+E   H  ALA LRA NN+P +F   RRPIVEFA+ENA+ ++
Sbjct:  590 MITRNSPAAEGLSDADLKKREKALIEKKAKLKNPNYFVSRTRLSVRNLPLNISSIELKDAFLKAVKNDDIKINNVKIMTSKDRKDSKGMPRSLGFGFLEVGVHEHALAILRATNNNPDLFGKNRRPIVEFAIENAKAIK 728          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: UPI00077A8B1B (RNA-binding protein 28-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI00077A8B1B)

HSP 1 Score: 138 bits (348), Expect = 8.500e-35
Identity = 78/158 (49.37%), Postives = 112/158 (70.89%), Query Frame = 1
Query:   34 EREERRELEL-TNAVITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLHLHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRKRKIR 504
            E +++R L L T  +I     AA+G+S+ DL +RQ+A  EKKAKL +PN+FVS TRL VRN+P NV + +L EIF+++    K+H+ +V I++ + R D  G+ +S G+GFVEF+ H DALA LRA NN+P IF   RRPIVEFA+EN+ +++ +K R
Sbjct:  550 ENKDKRNLYLATEGLIYPGSTAAEGLSQSDLTRRQKAEREKKAKLADPNYFVSSTRLCVRNLPLNVDDKKLAEIFSTAT-SEKVHVKKVLIMRSKDRKDTAGRQRSLGFGFVEFRNHKDALATLRATNNNPGIFSEDRRPIVEFAVENSVVIKAKKRR 706          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A7S0I761_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I761_MICPS)

HSP 1 Score: 136 bits (343), Expect = 1.690e-34
Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 1
Query:   94 AAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLH-----LHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRK 492
            AA+G+S+ D+ KR+RA +E+  KLKNPNFF+SRTRL VRNVP  V + +LK+IF  +V+ R        LH  K++ D TR D +GK +S+G GFVEF +H  ALAALRALNN+P++F   RRPI+EFA+E+A+ ++K
Sbjct:  283 AARGVSQADIMKRRRAKEEQALKLKNPNFFISRTRLQVRNVPPEVDQKELKKIFLEAVKKRATQANPRVLH-AKLLYDPTRPDAEGKPRSRGIGFVEFAEHEHALAALRALNNNPEVFNKARRPIIEFAVEDARAVKK 419          
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Match: A0A7R9Y5M5_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y5M5_MICPS)

HSP 1 Score: 132 bits (331), Expect = 5.440e-34
Identity = 76/148 (51.35%), Postives = 101/148 (68.24%), Query Frame = 1
Query:   64 TNAVITSQDEAAKGMSKGDLEKRQRAFDEKKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLH-----LHQVKIVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRPIVEFALENAQIMRK 492
            T   I  +  AA+G+S+ D+ KR+RA +E+K KLKNPNFF+S+ RL VRNVP  V + QLK+IF  +V  R        LH  +++ D TR D  GK +S+G GFVEF  H  ALAALR LNN+P IF A +RPIVEFA+E+A+ ++K
Sbjct:  200 TEGQIHEEGPAAQGVSREDIMKRRRAKEEQKMKLKNPNFFISKNRLQVRNVPPEVDQKQLKKIFHDAVLQRATKANPKVLH-ARLLFDNTRPDANGKPRSRGIGFVEFDAHDHALAALRTLNNNPTIFTAAKRPIVEFAVEDARAVKK 346          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113816.2862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HL09_9EUKA1.560e-4056.77Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI0009E4F4661.530e-3853.59RNA-binding protein 28-like n=1 Tax=Orbicella fave... [more]
A0A7S0CRV9_MICPS3.800e-3754.35Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A1Y5I107_OSTTA5.160e-3655.47Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A7D9DWU5_PARCT5.660e-3648.05RNA-binding 28-like n=1 Tax=Paramuricea clavata Ta... [more]
A0A2B4SW49_STYPI9.590e-3651.80RNA-binding protein 28 n=2 Tax=Stylophora pistilla... [more]
T2M3Z4_HYDVU6.240e-3551.80RNA-binding protein 28 n=3 Tax=Hydra vulgaris TaxI... [more]
UPI00077A8B1B8.500e-3549.37RNA-binding protein 28-like isoform X1 n=3 Tax=Acr... [more]
A0A7S0I761_MICPS1.690e-3453.62Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
A0A7R9Y5M5_MICPS5.440e-3451.35Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113816contigM-pyrifera_M_contig113816:28..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score142.1
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog70448.A0A090M5J1
KEGG koko:K14573
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.RNA recognition motif
EggNOG OGs34GQB@3041,37NXK@33090,KOG0127@1,KOG0127@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.2987146-CDS-M-pyrifera_M_contig113816:27..5311622815652.2987146-CDS-M-pyrifera_M_contig113816:27..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113816 28..531 -
1692277505.9058447-CDS-M-pyrifera_M_contig113816:27..5311692277505.9058447-CDS-M-pyrifera_M_contig113816:27..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113816 28..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113816.2862.1prot_M-pyrifera_M_contig113816.2862.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113816 28..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113816.2862.1

>prot_M-pyrifera_M_contig113816.2862.1 ID=prot_M-pyrifera_M_contig113816.2862.1|Name=mRNA_M-pyrifera_M_contig113816.2862.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
KRGARQRDRETEREERRELELTNAVITSQDEAAKGMSKGDLEKRQRAFDE
KKAKLKNPNFFVSRTRLSVRNVPRNVTESQLKEIFASSVQGRKLHLHQVK
IVKDQTRVDDKGKAKSKGYGFVEFKKHHDALAALRALNNHPKIFEAQRRP
IVEFALENAQIMRKRKIR
back to top

mRNA from alignment at M-pyrifera_M_contig113816:28..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113816.2862.1 ID=mRNA_M-pyrifera_M_contig113816.2862.1|Name=mRNA_M-pyrifera_M_contig113816.2862.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig113816:28..531- (Macrocystis pyrifera P11B4 male)
AAGCGGGGGGCGAGACAGAGAGACAGAGAGACAGAGAGAGAGGAGAGACG AGAACTAGAGCTGACGAATGCAGTGATCACGAGCCAGGACGAGGCGGCGA AGGGAATGTCGAAGGGCGACCTGGAGAAGCGGCAGCGGGCGTTCGACGAG AAGAAGGCCAAGCTGAAGAACCCGAACTTCTTCGTGTCCCGCACTCGCCT CTCCGTTCGCAACGTTCCCCGAAATGTGACAGAGTCACAGCTGAAGGAAA TCTTCGCCTCCTCAGTGCAGGGCAGGAAACTCCATTTGCACCAAGTGAAG ATTGTGAAGGACCAGACGAGAGTGGACGACAAGGGAAAGGCCAAGTCGAA GGGCTACGGATTCGTGGAGTTCAAGAAACACCACGACGCCCTAGCTGCTC TGCGTGCGCTGAACAACCACCCAAAGATATTCGAGGCACAGAGGAGACCC ATTGTGGAGTTCGCACTGGAGAATGCGCAGATCATGAGGAAGAGAAAGAT CAGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113816:28..531-

>mRNA_M-pyrifera_M_contig113816.2862.1 ID=mRNA_M-pyrifera_M_contig113816.2862.1|Name=mRNA_M-pyrifera_M_contig113816.2862.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig113816:28..531- (Macrocystis pyrifera P11B4 male)
AAGCGGGGGGCGAGACAGAGAGACAGAGAGACAGAGAGAGAGGAGAGACG
AGAACTAGAGCTGACGAATGCAGTGATCACGAGCCAGGACGAGGCGGCGA
AGGGAATGTCGAAGGGCGACCTGGAGAAGCGGCAGCGGGCGTTCGACGAG
AAGAAGGCCAAGCTGAAGAACCCGAACTTCTTCGTGTCCCGCACTCGCCT
CTCCGTTCGCAACGTTCCCCGAAATGTGACAGAGTCACAGCTGAAGGAAA
TCTTCGCCTCCTCAGTGCAGGGCAGGAAACTCCATTTGCACCAAGTGAAG
ATTGTGAAGGACCAGACGAGAGTGGACGACAAGGGAAAGGCCAAGTCGAA
GGGCTACGGATTCGTGGAGTTCAAGAAACACCACGACGCCCTAGCTGCTC
TGCGTGCGCTGAACAACCACCCAAAGATATTCGAGGCACAGAGGAGACCC
ATTGTGGAGTTCGCACTGGAGAATGCGCAGATCATGAGGAAGAGAAAGAT
CAGAAAGCGGGGGGCGAGACAGAGAGACAGAGAGACAGAGAGAGAGGAGA
GACGAGAACTAGAGCTGACGAATGCAGTGATCACGAGCCAGGACGAGGCG
GCGAAGGGAATGTCGAAGGGCGACCTGGAGAAGCGGCAGCGGGCGTTCGA
CGAGAAGAAGGCCAAGCTGAAGAACCCGAACTTCTTCGTGTCCCGCACTC
GCCTCTCCGTTCGCAACGTTCCCCGAAATGTGACAGAGTCACAGCTGAAG
GAAATCTTCGCCTCCTCAGTGCAGGGCAGGAAACTCCATTTGCACCAAGT
GAAGATTGTGAAGGACCAGACGAGAGTGGACGACAAGGGAAAGGCCAAGT
CGAAGGGCTACGGATTCGTGGAGTTCAAGAAACACCACGACGCCCTAGCT
GCTCTGCGTGCGCTGAACAACCACCCAAAGATATTCGAGGCACAGAGGAG
ACCCATTGTGGAGTTCGCACTGGAGAATGCGCAGATCATGAGGAAGAGAA
AGATCAGA
back to top