mRNA_M-pyrifera_M_contig101351.286.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101351.286.1
Unique NamemRNA_M-pyrifera_M_contig101351.286.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A0A517W8P8_9PLAN (Photosystem I assembly protein Ycf3 n=11 Tax=Gimesia TaxID=1649453 RepID=A0A517W8P8_9PLAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.670e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE
Sbjct:  293 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 330
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A0A517Q3B7_9PLAN (Photosystem I assembly protein Ycf3 n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q3B7_9PLAN)

HSP 1 Score: 70.9 bits (172), Expect = 2.130e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPLNISNDDYIPS + AFFETVESA+SVTNVRSAE
Sbjct:  292 GFEPPLNISNDDYIPSGNDAFFETVESAQSVTNVRSAE 329
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A0A517VBQ4_9PLAN (Photosystem I assembly protein Ycf3 n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VBQ4_9PLAN)

HSP 1 Score: 63.9 bits (154), Expect = 7.190e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPL++SNDDYIPS D +F ETV+S+ESVTNVRS E
Sbjct:  304 GFEPPLHVSNDDYIPSVDNSFLETVQSSESVTNVRSVE 341
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A0A518I8V4_9PLAN (Photosystem I assembly protein Ycf3 n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I8V4_9PLAN)

HSP 1 Score: 61.6 bits (148), Expect = 4.800e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPLN+SNDDYIPS+   FF TV+S +SVT VRSAE
Sbjct:  299 GFEPPLNVSNDDYIPSESNDFFVTVQSTQSVTTVRSAE 336
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A6CDG9_9PLAN (TPR repeat protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CDG9_9PLAN)

HSP 1 Score: 61.2 bits (147), Expect = 5.680e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPL++SNDDYIPS D  F +TV+S ESVTNVRS E
Sbjct:  255 GFEPPLHVSNDDYIPSVDNTFLKTVQSLESVTNVRSVE 292
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A0A517W0N5_9PLAN (Photosystem I assembly protein Ycf3 n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W0N5_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-9
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPL++SNDD+IPS+   FFETV+S ES+TNVR+ E
Sbjct:  292 GFEPPLHVSNDDFIPSESNEFFETVQSTESMTNVRAEE 329
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BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Match: A0A2E2CBQ8_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CBQ8_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-9
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE 114
            GFEPPL++SN+DYIPS D  F +TV+S+ESVT VRSAE
Sbjct:  305 GFEPPLHVSNEDYIPSADNTFLQTVQSSESVTTVRSAE 342
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101351.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A517W8P8_9PLAN1.670e-16100.00Photosystem I assembly protein Ycf3 n=11 Tax=Gimes... [more]
A0A517Q3B7_9PLAN2.130e-1389.47Photosystem I assembly protein Ycf3 n=2 Tax=Gimesi... [more]
A0A517VBQ4_9PLAN7.190e-1176.32Photosystem I assembly protein Ycf3 n=1 Tax=Gimesi... [more]
A0A518I8V4_9PLAN4.800e-1073.68Photosystem I assembly protein Ycf3 n=2 Tax=Gimesi... [more]
A6CDG9_9PLAN5.680e-1073.68TPR repeat protein n=8 Tax=Planctomycetaceae TaxID... [more]
A0A517W0N5_9PLAN1.220e-968.42Photosystem I assembly protein Ycf3 n=2 Tax=Gimesi... [more]
A0A2E2CBQ8_9PLAN1.250e-971.05Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101351contigM-pyrifera_M_contig101351:2..118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.3947067-CDS-M-pyrifera_M_contig101351:1..1181622815511.3947067-CDS-M-pyrifera_M_contig101351:1..118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101351 2..118 +
1692277444.4452844-CDS-M-pyrifera_M_contig101351:1..1181692277444.4452844-CDS-M-pyrifera_M_contig101351:1..118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101351 2..118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101351.286.1prot_M-pyrifera_M_contig101351.286.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101351 2..118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101351.286.1

>prot_M-pyrifera_M_contig101351.286.1 ID=prot_M-pyrifera_M_contig101351.286.1|Name=mRNA_M-pyrifera_M_contig101351.286.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
GFEPPLNISNDDYIPSDDGAFFETVESAESVTNVRSAE*
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mRNA from alignment at M-pyrifera_M_contig101351:2..118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101351.286.1 ID=mRNA_M-pyrifera_M_contig101351.286.1|Name=mRNA_M-pyrifera_M_contig101351.286.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig101351:2..118+ (Macrocystis pyrifera P11B4 male)
GGGTTTGAGCCTCCGCTCAATATCAGCAATGATGATTACATTCCCTCGGA
CGACGGGGCTTTCTTCGAAACCGTCGAAAGTGCCGAGTCGGTAACAAACG
TACGCAGTGCTGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101351:2..118+

>mRNA_M-pyrifera_M_contig101351.286.1 ID=mRNA_M-pyrifera_M_contig101351.286.1|Name=mRNA_M-pyrifera_M_contig101351.286.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig101351:2..118+ (Macrocystis pyrifera P11B4 male)
GGGTTTGAGCCTCCGCTCAATATCAGCAATGATGATTACATTCCCTCGGA
CGACGGGGCTTTCTTCGAAACCGTCGAAAGTGCCGAGTCGGTAACAAACG
TACGCAGTGCTGAGTAAGGGTTTGAGCCTCCGCTCAATATCAGCAATGAT
GATTACATTCCCTCGGACGACGGGGCTTTCTTCGAAACCGTCGAAAGTGC
CGAGTCGGTAACAAACGTACGCAGTGCTGAGTAA
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