mRNA_M-pyrifera_M_contig113716.2855.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113716.2855.1
Unique NamemRNA_M-pyrifera_M_contig113716.2855.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113716.2855.1 vs. uniprot
Match: A0A8J5XJM8_DIALT (Ku domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJM8_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 6.530e-6
Identity = 32/113 (28.32%), Postives = 53/113 (46.90%), Query Frame = 1 
Query:   82 ADEVDEERVARFYRFGHDLFPLSDAELSLVRPVSQREFQLLGFLPKDRIPRFSVLGDTEIVLGDERYPGAAQGVAALAIAMRDAGRVALGRFISRARSNLALVILIPKVQEQE 420
            A  V  E  AR ++FG DL        S       +  +LLGF+ +D IP+    G  ++++ D     AA  + AL +A+ +AG+  L RFI R  +       +P + + +
Sbjct:  332 AQNVRPEDTARAFKFGPDLVVEQSIAQSFAWKSGDKSLKLLGFVERDAIPQKDRFGGADVLIADPADAHAADALHALIVALSEAGKAMLVRFIPRKNAEPRTAACLPAIAQAD 444
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113716.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J5XJM8_DIALT6.530e-628.32Ku domain-containing protein n=1 Tax=Diacronema lu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113716contigM-pyrifera_M_contig113716:117..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue9.1e-13
Seed eggNOG ortholog112098.XP_008606662.1
Preferred nameYKU80
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2326@1,KOG2326@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.8141036-CDS-M-pyrifera_M_contig113716:116..5391622815651.8141036-CDS-M-pyrifera_M_contig113716:116..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113716 117..539 -
1692277505.7110405-CDS-M-pyrifera_M_contig113716:116..5391692277505.7110405-CDS-M-pyrifera_M_contig113716:116..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113716 117..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113716.2855.1prot_M-pyrifera_M_contig113716.2855.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113716 117..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113716.2855.1

>prot_M-pyrifera_M_contig113716.2855.1 ID=prot_M-pyrifera_M_contig113716.2855.1|Name=mRNA_M-pyrifera_M_contig113716.2855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
SSASSSSAEQSGMQKARVDRRFVEKGGADEVDEERVARFYRFGHDLFPLS
DAELSLVRPVSQREFQLLGFLPKDRIPRFSVLGDTEIVLGDERYPGAAQG
VAALAIAMRDAGRVALGRFISRARSNLALVILIPKVQEQEQ
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mRNA from alignment at M-pyrifera_M_contig113716:117..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113716.2855.1 ID=mRNA_M-pyrifera_M_contig113716.2855.1|Name=mRNA_M-pyrifera_M_contig113716.2855.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig113716:117..539- (Macrocystis pyrifera P11B4 male)
TCTTCTGCTTCTTCTTCCTCGGCAGAGCAGAGTGGCATGCAGAAGGCTCG
AGTGGATCGTCGATTCGTGGAGAAAGGTGGGGCGGATGAGGTGGACGAGG
AGAGAGTGGCTCGGTTCTATCGTTTCGGGCACGACTTGTTCCCTCTCAGC
GACGCAGAACTGTCCTTGGTACGACCCGTGAGCCAACGGGAGTTCCAGCT
CCTTGGGTTTCTCCCCAAAGACAGGATTCCACGCTTCTCCGTTCTGGGAG
ATACAGAAATCGTGCTCGGAGACGAGAGGTATCCAGGCGCAGCGCAAGGC
GTCGCAGCTCTTGCCATCGCCATGCGTGACGCAGGCAGAGTGGCGCTAGG
GAGGTTCATCTCCAGAGCTAGATCCAACCTCGCACTCGTCATCCTCATCC
CAAAAGTACAAGAACAAGAACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113716:117..539-

>mRNA_M-pyrifera_M_contig113716.2855.1 ID=mRNA_M-pyrifera_M_contig113716.2855.1|Name=mRNA_M-pyrifera_M_contig113716.2855.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig113716:117..539- (Macrocystis pyrifera P11B4 male)
TCTTCTGCTTCTTCTTCCTCGGCAGAGCAGAGTGGCATGCAGAAGGCTCG
AGTGGATCGTCGATTCGTGGAGAAAGGTGGGGCGGATGAGGTGGACGAGG
AGAGAGTGGCTCGGTTCTATCGTTTCGGGCACGACTTGTTCCCTCTCAGC
GACGCAGAACTGTCCTTGGTACGACCCGTGAGCCAACGGGAGTTCCAGCT
CCTTGGGTTTCTCCCCAAAGACAGGATTCCACGCTTCTCCGTTCTGGGAG
ATACAGAAATCGTGCTCGGAGACGAGAGGTATCCAGGCGCAGCGCAAGGC
GTCGCAGCTCTTGCCATCGCCATGCGTGACGCAGGCAGAGTGGCGCTAGG
GAGGTTCATCTCCAGAGCTAGATCCAACCTCGCACTCGTCATCCTCATCC
CAAAAGTACAAGAACAAGAACAATCTTCTGCTTCTTCTTCCTCGGCAGAG
CAGAGTGGCATGCAGAAGGCTCGAGTGGATCGTCGATTCGTGGAGAAAGG
TGGGGCGGATGAGGTGGACGAGGAGAGAGTGGCTCGGTTCTATCGTTTCG
GGCACGACTTGTTCCCTCTCAGCGACGCAGAACTGTCCTTGGTACGACCC
GTGAGCCAACGGGAGTTCCAGCTCCTTGGGTTTCTCCCCAAAGACAGGAT
TCCACGCTTCTCCGTTCTGGGAGATACAGAAATCGTGCTCGGAGACGAGA
GGTATCCAGGCGCAGCGCAAGGCGTCGCAGCTCTTGCCATCGCCATGCGT
GACGCAGGCAGAGTGGCGCTAGGGAGGTTCATCTCCAGAGCTAGATCCAA
CCTCGCACTCGTCATCCTCATCCCAAAAGTACAAGAACAAGAACAA
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