mRNA_M-pyrifera_M_contig11370.2850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11370.2850.1
Unique NamemRNA_M-pyrifera_M_contig11370.2850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11370.2850.1 vs. uniprot
Match: D7FQ61_ECTSI (Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ61_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 2.070e-89
Identity = 153/242 (63.22%), Postives = 182/242 (75.21%), Query Frame = 1 
Query:    1 VCARARVSARERAFSVALHSLLSRASEKEKLAXXXXXXXXXXXXXXXSTVWQAARFGVPVRRLQELMEQETKESRHTNPSEPFEQLCRRVHGVVVESKHPYPKGVRQEFEACVLGADHFFVAFDAASNATMGTGKVVLREPKAEEPAVFSPRGAYHSSNPDEARLPGVNGEPPMRVEGSSVLVTFSASYWRGVAPAGEDYGWRLVCFTADGEGTSDDAKSLIVDAERAADRAQAVDAVNVLG 726
            +CARAR +A E AFS A  SL +R SE++  A               STVW AAR+GVPVR L+E+M ++  +SR+ +PSEPF+QLCRRV GVVVES+HPYPKGVRQ+ EA V  AD F+VAFDAASNAT+G GKV L+E  A +P +F PRG Y+     EARLPGV+GE PMRV+GSSVLVTFSASYW GVAPAGEDYGWRLVCFTAD +   D AK+L+ +AERAADRA+AVDAVN  G
Sbjct:    1 MCARARETAIEAAFSSAFSSLQARRSEQKAAAACAEGERAELRASVCSTVWSAARYGVPVRTLREMMSEKMFQSRNFDPSEPFDQLCRRVEGVVVESRHPYPKGVRQDIEAYVANADSFYVAFDAASNATIGMGKVALQEFNARDPKLFFPRGPYNVDTSGEARLPGVDGERPMRVQGSSVLVTFSASYWTGVAPAGEDYGWRLVCFTADDD---DHAKALVSEAERAADRAEAVDAVNTHG 239
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BLAST of mRNA_M-pyrifera_M_contig11370.2850.1 vs. uniprot
Match: A0A6H5KVI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI9_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.130e-40
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:  391 MGTGKVVLREPKAEEPAVFSPRGAYHSSNPDEARLPGVNGEPPMRVEGSSVLVTFSASYWRGVAPAGEDYGWRLVCFTADGEGTSDDAKSLIVDAERAADRAQAVDAVNVLG 726
            MG GKV L+E  A +P +F PRG Y+     EARLPGV+GE PMRV+GSSVLVTFSASYW GVAPAGEDYGWRLVCFTAD +   D AK+L+ +A+RAADRA+AVDAVN LG
Sbjct:    1 MGMGKVALQEFNARDPKLFFPRGPYNGDTSSEARLPGVDGERPMRVQGSSVLVTFSASYWTGVAPAGEDYGWRLVCFTADDD---DHAKALVSEAKRAADRAEAVDAVNTLG 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11370.2850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ61_ECTSI2.070e-8963.22Chain A, Crystal Structure Of The Bard1 Ankyrin Re... [more]
A0A6H5KVI9_9PHAE4.130e-4069.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11370contigM-pyrifera_M_contig11370:106..4342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.7
Seed ortholog evalue1.3e-75
Seed eggNOG ortholog2880.D7FQ61
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size729
Cds size729
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11370.2850.1prot_M-pyrifera_M_contig11370.2850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11370 106..4342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.5637684-CDS-M-pyrifera_M_contig11370:105..3791622815651.5637684-CDS-M-pyrifera_M_contig11370:105..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 106..379 -
1692277505.5768604-CDS-M-pyrifera_M_contig11370:105..3791692277505.5768604-CDS-M-pyrifera_M_contig11370:105..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 106..379 -
1622815651.575699-CDS-M-pyrifera_M_contig11370:1919..20651622815651.575699-CDS-M-pyrifera_M_contig11370:1919..2065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 1920..2065 -
1692277505.5906866-CDS-M-pyrifera_M_contig11370:1919..20651692277505.5906866-CDS-M-pyrifera_M_contig11370:1919..2065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 1920..2065 -
1622815651.5866933-CDS-M-pyrifera_M_contig11370:3666..37511622815651.5866933-CDS-M-pyrifera_M_contig11370:3666..3751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 3667..3751 -
1692277505.6010153-CDS-M-pyrifera_M_contig11370:3666..37511692277505.6010153-CDS-M-pyrifera_M_contig11370:3666..3751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 3667..3751 -
1622815651.598683-CDS-M-pyrifera_M_contig11370:4118..43421622815651.598683-CDS-M-pyrifera_M_contig11370:4118..4342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 4119..4342 -
1692277505.6101422-CDS-M-pyrifera_M_contig11370:4118..43421692277505.6101422-CDS-M-pyrifera_M_contig11370:4118..4342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11370 4119..4342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11370.2850.1

>prot_M-pyrifera_M_contig11370.2850.1 ID=prot_M-pyrifera_M_contig11370.2850.1|Name=mRNA_M-pyrifera_M_contig11370.2850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=243bp
VCARARVSARERAFSVALHSLLSRASEKEKLAAAAERRKAAEKAASSSTV
WQAARFGVPVRRLQELMEQETKESRHTNPSEPFEQLCRRVHGVVVESKHP
YPKGVRQEFEACVLGADHFFVAFDAASNATMGTGKVVLREPKAEEPAVFS
PRGAYHSSNPDEARLPGVNGEPPMRVEGSSVLVTFSASYWRGVAPAGEDY
GWRLVCFTADGEGTSDDAKSLIVDAERAADRAQAVDAVNVLG*
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mRNA from alignment at M-pyrifera_M_contig11370:106..4342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11370.2850.1 ID=mRNA_M-pyrifera_M_contig11370.2850.1|Name=mRNA_M-pyrifera_M_contig11370.2850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4237bp|location=Sequence derived from alignment at M-pyrifera_M_contig11370:106..4342- (Macrocystis pyrifera P11B4 male)
GTATGCGCGAGGGCCAGGGTTTCCGCGAGGGAGCGGGCGTTTTCCGTGGC
GCTACATTCCTTGCTATCCCGCGCATCGGAGAAGGAAAAATTGGCCGCTG
CCGCCGAGCGCCGAAAAGCTGCCGAGAAAGCCGCGTCTAGCTCGACGGTT
TGGCAGGCGGCGAGATTTGGCGTACCGGTGCGACGCCTGCAAGAGCTTAT
GGAGCAGGAGACGAAGGAGTCAAGGTTTGTGTAGGGCATTTTCTCCTTGG
GCGATGACAAAAAAAAAACGGCGTGCTATTTAGTACCTGGTAATCAATAG
CAGGTGGTGTGCATGATCAAAAATGGACGTGTTTTTTTGCTATCCAGGTC
GCAGCTGGAGCCTGACGAGACGCGGTGATTGATGGTGACCTTTTTTTTCG
CATTAGGCATTAGGTTATGCCTGCATCATATCTCGGGCAGTATATGTGCG
TCCGCTAGCAATGATGTCAGCATTGATGTCAGCAAGATGAAGCAGACATA
GTACCATGTGTACTCCGGATTACCCGTTGGGGAGGTGTAGTGAGCATCGT
TTCTTTCCCGTCCTCACATTCGGACATTTTTCCCCACACAGGCATACAAA
TCCGTCCGAGCCATTCGAGCAGCTCTGTCGGCGAGTGCACGGCGTCGTTG
TGGAGAGCAAGCACCCTTATCCAAAGGTTTGAGTCTGTAGTTGAGAAACG
CCGGTGTATGCCGCGAAGACGTGCCCTCATTCCCATTGTTATTCTTGCCT
TTGCCATCCGCCAAAGGGCAGTATGAGCTTCAACGTTGATCACCGAAAAG
CATCCAAAACATTCCCCGAGTTAGTATTTGGCGTGTTCGGTGCGAATGTG
TACGCGATGGTGATGGGCTCGCTTACTGGTGGCCAGATATAGGACATACA
GCCCAGATTTATGAATCAAGAGGAAAACGCTTCCCCGAGTCACTGTCAAA
GTGAACCCGTGGAACCGTTCAGAAAGATGAGATACTGGTCTGACCCGGGG
CCAGTTGATGGGTTGGTTGCGCTCAACAGGAAAGCTGAGAGCTGCGCCTC
TCATGCCAGAGGACAAGCTGTGAGTGCTTAGGATTAGATGCGATGGATAA
CGTTTTGCCGTACGTAAGGGCTTTGCTCGCGGAATAAACGTTGATTGTTT
AGGGCGGCGGGGGGGGGGGGGGGGGGGGGGGGGGAATTGGTGTTCTGGGC
CCAAAATTGCGAGGTTTTTTTTTCTCTTCCGCCGTCCACCCCTGCGGGTC
ATCCCAAAGTTTCTGTGGGCAAACGCTAACTGNNNNNNNNNNGGGGGGGC
GGTGTAGGGTGTGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGTGGTTG
GGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGAGTTGATTGG
CCTACTCGTGCAAAAATCTCGAGGCTCTTTTTTTCTTCCGGCCGTTCCCG
CCTTCGAGCAATGCCAATGTTGCCGTGGCAAATGACTACCTGGTACGTAT
AGAACAGGGACCCGCCACCCGTCATGCCCACAAGACACTACAGACGTGGA
GACATCATTTGTTGTTGTGTCGGAAGTAGGCCCATCGTGTGAAGGAGTTG
CTTCGTAAGGGTACAGATGTGTCGATGCTGAAATTTCGTCCACCATATTC
TTCGTCTCGTTCATCGCTGCCGCTTTCGCTCCGTCAAGAGCGTAGCTACG
TACCAGGTATAAGGTAAAGAAACGAGGAGACAAAGGGTACACGAAGCAGG
AGCAGGAAACAGTGCTAGAGAGAGGGGAACCCGGTACACTACTACCGTTG
CGGTTCCCATACTCTACCATGTGCACCTCATTTGAGAGGTGTGACATCAC
TTCTTCTAACACCCATATCTACGTATACGTATCGCCTCCATTCCAATCAC
CACAAAAAACGATACCACCGCCAGAAAAGAATGTTGATGTACATACGTAT
ATATACACTGGTAGTGCATAGGCACCTGGTAAAACTTCGAAAGGCCCAAG
GACCTTTCCCAACGACAGAGACGCGGCCAGAGGACTCCAAAATAAAACCA
CATCGGACGATCCACATCAAGAGCATAAAAGGGGTGAAACGAAAACGTAA
CTTGATTTGATGTGGAGACGACATATGTTTCGGTATCTTCCACCACGAAA
CGTCAACTACGGACACCGCACTCCCCCCAGGGGAACGATCTGTTGTCGTG
TGCATGCGCTCCCCCCGGTCCCTTCTCTTACCGTCGACGGCCATGGATTT
TGCTTAACGCTTTTTTCTGTTGCTCAGGGGGTTCGACAAGAGTTCGAGGC
GTGCGTGCTTGGTGCCGACCACTTTTTCGTCGCGTTTGATGCGGCGTCCA
ACGCGACGATGGGAACAGGCAAGGTTGTTTTGCGAGAACCTAAAGCCGAA
GAGCCAGCAGTTTTTTCTCCCAGGTGACCTTTTTTTTCCAGCTCATGCAA
TAAAACCGGAGTCGAGGGGTCGGGTGTTTATGCTGTGCTTTTTCTTACGA
TTTTTGCTGAGAACACTATTAACAGTAATAGCAATCCTCTTTAGAAACGC
GCACACGGTTTGGGTTGATTCTTACTTGATGATCTAGATCTTTCAGGGAA
GATGATCTGTATGATCTGTATGTTCTAGCTCATGTTGCCGGGTGGGGGTT
GTATAACCTGCACGATCTAGGACATGTCTCCTGGGTTGGGTCTGTACTAT
ACATATCCTGCTCTACATCTCATAACGGCAGGTTAGGTTCTAGATGATCT
ATCTGTAGATGATCTATCTGTCGATGACCTATCCGTAGATGGTCTATCTG
TCCGACGTATGAAATTCTTTGGAGCTATAACACCATGGGCGGAAATCTAT
GGACCGTTTAGACGCTACAGTAGTGTGAATACCAAGCGGTCCTTATACTT
AAGCTTAGAGTGGCGTTGGTTTTGGGTCATTTTTGCTGTGGTGAAAGGGG
TTAGAACTCTCCGTGTTTGTACAACAGACGACGCAAAATATGCGCAACGC
CGTTATCCGCTTTTAGATTTGCCTTCTGTCGTCGGGCGCCAAAACTACAG
CGATGATAATGCGTACTGCATTTTTTTAACGAACAAAAAAAAACGCGGCA
AGAGGAAAATATCACCACCCGGCACACCTACATCGTAATATTACCTGTAC
GAAATGCCACCCTGTGTTCGGGAATATACGTATATATATATATTATTGCA
GCGTTTCAATATTCAACCCACAAGCCCATAGGCACGCTCTATATTTCCGA
ACAGGTTGGTGTGATGTTGCCGTATCACCTTGATGTACAACGCACATGCA
CACACAGCAATGTCACTGAACGAAACGTCGCACATTGTGTGACAACACGT
TCTTCTTGCCTCTCTTTCTCCCGGCCGTTCCGTTGCTGTTCGCGGTGGTC
AGACGTCGCTCATTTTGCTTTTGCCCCATGTACCCGAAAGAACAATGATG
TTTTAGTACTTCATGTAGTACCGTGTCACACGGGGTGATAAGATATCACA
CCCCCCGAGACGAAATTTCCGAGTCGAATTTCTCCGAAACATCGGGGCAG
GCACACACGACCATAATGCATCTGGCGTTGGAAACATCTCGGCGAGATAT
CCGAGATGTTTCCTCAGACGCGTGCATCGCTCGGCGTTTGCGCCTTCCTC
GATTTCGAGAGAATCGGCTTCGAAAATTCGTTGGGAAGGGAGTGTGTTAT
CCTATCACACGTGTTGTACGGTATAGTTGGCGTTTTCTTGTCGGGGGTGT
TGTGAGTACGGTAGTGTTATCCGATCACCTGTCACACGTGTCATCATGCG
GTATAGTGTTATATTATCACACGTGTGGTACGCTAAGTGTTACCTTGCCA
CACGCGTGATACGGTACCTGCCTGAAAACATTCCGCTCAGTCTGGCCGTC
TCCTTCGCCTTTTCCGTGTACACACATGTGCACATATATATATATATATA
TATGTATACATAGGGGGGCCTACCACAGCAGCAACCCGGACGAAGCACGC
CTGCCAGGAGTGAATGGAGAGCCTCCAATGCGCGTGGAGGGCTCCTCCGT
GCTGGTGACGTTCTCTGCGTCGTACTGGAGAGGGGTGGCCCCGGCGGGGG
AAGACTACGGCTGGCGTCTGGTGTGCTTCACCGCCGACGGCGAAGGCACC
AGCGACGACGCCAAATCTCTGATTGTCGACGCCGAACGGGCTGCCGATCG
CGCGCAGGCAGTGGACGCGGTCAACGTATTGGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11370:106..4342-

>mRNA_M-pyrifera_M_contig11370.2850.1 ID=mRNA_M-pyrifera_M_contig11370.2850.1|Name=mRNA_M-pyrifera_M_contig11370.2850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1458bp|location=Sequence derived from alignment at M-pyrifera_M_contig11370:106..4342- (Macrocystis pyrifera P11B4 male)
GTATGCGCGAGGGCCAGGGTTTCCGCGAGGGAGCGGGCGTTTTCCGTGGC
GCTACATTCCTTGCTATCCCGCGCATCGGAGAAGGAAAAATTGGCCGCTG
CCGCCGAGCGCCGAAAAGCTGCCGAGAAAGCCGCGTCTAGCTCGACGGTT
TGGCAGGCGGCGAGATTTGGCGTACCGGTGCGACGCCTGCAAGAGCTTAT
GGAGCAGGAGACGAAGGAGTCAAGGTATGCGCGAGGGCCAGGGTTTCCGC
GAGGGAGCGGGCGTTTTCCGTGGCGCTACATTCCTTGCTATCCCGCGCAT
CGGAGAAGGAAAAATTGGCCGCTGCCGCCGAGCGCCGAAAAGCTGCCGAG
AAAGCCGCGTCTAGCTCGACGGTTTGGCAGGCGGCGAGATTTGGCGTACC
GGTGCGACGCCTGCAAGAGCTTATGGAGCAGGAGACGAAGGAGTCAAGGC
ATACAAATCCGTCCGAGCCATTCGAGCAGCTCTGTCGGCGAGTGCACGGC
GTCGTTGTGGAGAGCAAGCACCCTTATCCAAAGGCATACAAATCCGTCCG
AGCCATTCGAGCAGCTCTGTCGGCGAGTGCACGGCGTCGTTGTGGAGAGC
AAGCACCCTTATCCAAAGGGGGTTCGACAAGAGTTCGAGGCGTGCGTGCT
TGGTGCCGACCACTTTTTCGTCGCGTTTGATGCGGCGTCCAACGCGACGA
TGGGAACAGGCAAGGTTGTTTTGCGAGAACCTAAAGCCGAAGAGCCAGCA
GTTTTTTCTCCCAGGGGGTTCGACAAGAGTTCGAGGCGTGCGTGCTTGGT
GCCGACCACTTTTTCGTCGCGTTTGATGCGGCGTCCAACGCGACGATGGG
AACAGGCAAGGTTGTTTTGCGAGAACCTAAAGCCGAAGAGCCAGCAGTTT
TTTCTCCCAGGGGGGCCTACCACAGCAGCAACCCGGACGAAGCACGCCTG
CCAGGAGTGAATGGAGAGCCTCCAATGCGCGTGGAGGGCTCCTCCGTGCT
GGTGACGTTCTCTGCGTCGTACTGGAGAGGGGTGGCCCCGGCGGGGGAAG
ACTACGGCTGGCGTCTGGTGTGCTTCACCGCCGACGGCGAAGGCACCAGC
GACGACGCCAAATCTCTGATTGTCGACGCCGAACGGGCTGCCGATCGCGC
GCAGGCAGTGGACGCGGTCAACGTATTGGGGTGAGGGGGCCTACCACAGC
AGCAACCCGGACGAAGCACGCCTGCCAGGAGTGAATGGAGAGCCTCCAAT
GCGCGTGGAGGGCTCCTCCGTGCTGGTGACGTTCTCTGCGTCGTACTGGA
GAGGGGTGGCCCCGGCGGGGGAAGACTACGGCTGGCGTCTGGTGTGCTTC
ACCGCCGACGGCGAAGGCACCAGCGACGACGCCAAATCTCTGATTGTCGA
CGCCGAACGGGCTGCCGATCGCGCGCAGGCAGTGGACGCGGTCAACGTAT
TGGGGTGA
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