mRNA_M-pyrifera_M_contig113692.2847.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113692.2847.1
Unique NamemRNA_M-pyrifera_M_contig113692.2847.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A5A8DWV7_CAFRO (Calpain catalytic domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWV7_CAFRO)

HSP 1 Score: 133 bits (334), Expect = 9.900e-34
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   37 IACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            +AC S SGSD   N +GIVQGHAF++L A   SDGRG++L MVKVRNPHG+ EW G+Y D D   WT+RL+ EM HDP  SGDDG +CM + DF  NF V+Y+
Sbjct: 1560 VACGSHSGSDTTRNKSGIVQGHAFSVLSAVDASDGRGQSLRMVKVRNPHGKAEWTGRYGDSDSAHWTQRLKKEMAHDPDASGDDGTFCMLWEDFVENFAVVYL 1662          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A5A8ELP6_CAFRO (Calpain catalytic domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELP6_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 1.360e-33
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   37 IACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            +AC S SGSD   N +GIVQGHAF++L A   SDGRG++L MVKVRNPHG+ EW G+Y D D   WT+RL+ EM HDP  SGDDG +CM + DF  NF V+Y+
Sbjct: 2384 VACGSHSGSDTTRNKSGIVQGHAFSVLSAVDASDGRGQSLRMVKVRNPHGKAEWTGRYGDADSAHWTQRLKKEMAHDPDASGDDGTFCMLWEDFVENFAVVYL 2486          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A5A8C976_CAFRO (Calpain catalytic domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C976_CAFRO)

HSP 1 Score: 132 bits (331), Expect = 2.480e-33
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   37 IACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            +AC S SGSD   N  GIVQGHAF++L A+  +DGRG +L M+ VRNPHG+TEW G+Y D D+  WT+RL+ EM HDP  SGDDG +CM + DF  NF V+Y+
Sbjct: 1026 VACGSHSGSDTTQNKNGIVQGHAFSVLSAKDANDGRGNSLRMLTVRNPHGKTEWTGRYGDTDLVRWTQRLKAEMGHDPSASGDDGTFCMLWEDFVENFAVVYL 1128          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A5A8DHJ6_CAFRO (Calpain catalytic domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHJ6_CAFRO)

HSP 1 Score: 132 bits (331), Expect = 2.480e-33
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   37 IACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            +AC S SGSD   N  GIVQGHAF++L A+  +DGRG +L M+ VRNPHG+TEW G+Y D D+  WT+RL+ EM HDP  SGDDG +CM + DF  NF V+Y+
Sbjct: 1064 VACGSHSGSDTTQNKNGIVQGHAFSVLSAKDANDGRGNSLRMLTVRNPHGKTEWTGRYGDTDLVRWTQRLKAEMGHDPSASGDDGTFCMLWEDFVENFAVVYL 1166          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A5A8D6P7_CAFRO (Calpain catalytic domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D6P7_CAFRO)

HSP 1 Score: 132 bits (331), Expect = 2.520e-33
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   37 IACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            +AC S SGSD   N  GIVQGHAF++L A+  +DGRG +L M+ VRNPHG+TEW G+Y D D+  WT+RL+ EM HDP  SGDDG +CM + DF  NF V+Y+
Sbjct: 1653 VACGSHSGSDTTQNKNGIVQGHAFSVLSAKDANDGRGNSLRMLTVRNPHGKTEWTGRYGDTDLVRWTQRLKAEMGHDPSASGDDGTFCMLWEDFVENFAVVYL 1755          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A813BDN6_9DINO (ADL1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BDN6_9DINO)

HSP 1 Score: 129 bits (324), Expect = 9.170e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   37 IACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            +AC S S SD   N  GIVQGHAF++L A+  +DGRG +L M+ VRNPHG+TEW G+Y D D+  WT+RL+ EM HDP  SGDDG +CM + DF  NF V+Y+
Sbjct:  352 VACGSHSDSDTTQNKNGIVQGHAFSVLSAKDANDGRGNSLRMLTVRNPHGKTEWTGRYGDTDLVRWTQRLKAEMGHDPSASGDDGTFCMLWEDFVENFAVVYL 454          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A7S4UW05_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UW05_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 1.550e-16
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    7 LVEASDAKAYIACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            + + SD    + C S +G D  T+ AGIVQGHA+++L    V   R     +++VRNP G  EW G++SD+D  SWT+R+R ++D+   K  +DG + M F D+  ++  +YI
Sbjct:  230 MQQLSDDGHMLGCGSHAGCDTDTSDAGIVQGHAYSILRLEEVDGNR-----LMQVRNPWGSVEWKGRWSDKDTASWTQRMRAKLDY---KDENDGTFWMAFEDWVNHYSKLYI 334          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: A0A6U8JVL3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8JVL3_9EUGL)

HSP 1 Score: 75.5 bits (184), Expect = 1.690e-13
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 DALVEASDAKAYIACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGS--WTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            D LV   ++   +  +S +GSD  TN  GIV GHA++LL  ++V D     L M ++RNP GR EW G YSD   GS  WT RL+ ++ +    + DDG + MTF D+  +++ +++
Sbjct: 1075 DDLVHWCESNYLLGASSHAGSDTNTNPLGIVYGHAYSLLTVKQVDD-----LKMCQLRNPWGRGEWKGDYSD---GSPKWTARLKQKLSY---TNSDDGVFWMTFEDYLDHYRSLHV 1180          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: UPI001BFAC4FA (calpain-9 n=2 Tax=Alosa TaxID=34772 RepID=UPI001BFAC4FA)

HSP 1 Score: 72.0 bits (175), Expect = 2.630e-12
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    7 LVEASDAKAYIACA---SASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            L +A D  + + C+   S+S       S G+V+GHA+++     V+ G G+ + +++VRNP G+ EWNG++SD +   W    ++E D   R SGDDG + M F DF AN+  + I
Sbjct:  217 LKKALDRGSMLGCSIDISSSAESEARTSTGLVKGHAYSITGVEEVNCG-GRKVHLIRVRNPWGQVEWNGRWSD-NSREWNMIDKSEKDRILRYSGDDGEFWMEFDDFKANYDKVEI 330          
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Match: E4WY71_OIKDI (Calpain catalytic domain-containing protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4WY71_OIKDI)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-11
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   85 GIVQGHAFTLLLARRVSDGRGKTLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWCMTFADFAANFKVIYI 345
            G++ GHA+ LL    V+   G  ++MV +RNP GRTEW+G +SD+D  +W +    E +    +  DDG++ MT  D+   F+V+ I
Sbjct:  225 GLISGHAYALLNVETVALKDGSRVEMVNIRNPWGRTEWDGDWSDKDTVNWNRVSEEEKNRLGFEVKDDGSFWMTVKDWVDEFEVLTI 311          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113692.2847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DWV7_CAFRO9.900e-3459.22Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A5A8ELP6_CAFRO1.360e-3359.22Calpain catalytic domain-containing protein n=3 Ta... [more]
A0A5A8C976_CAFRO2.480e-3357.28Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A5A8DHJ6_CAFRO2.480e-3357.28Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A5A8D6P7_CAFRO2.520e-3357.28Calpain catalytic domain-containing protein n=3 Ta... [more]
A0A813BDN6_9DINO9.170e-3356.31ADL1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S4UW05_9DINO1.550e-1638.05Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6U8JVL3_9EUGL1.690e-1338.46Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI001BFAC4FA2.630e-1236.21calpain-9 n=2 Tax=Alosa TaxID=34772 RepID=UPI001BF... [more]
E4WY71_OIKDI2.070e-1137.93Calpain catalytic domain-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113692contigM-pyrifera_M_contig113692:114..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog529818.AMSG_05175T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.3623538-CDS-M-pyrifera_M_contig113692:113..4641622815651.3623538-CDS-M-pyrifera_M_contig113692:113..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113692 114..464 -
1692277505.4760466-CDS-M-pyrifera_M_contig113692:113..4641692277505.4760466-CDS-M-pyrifera_M_contig113692:113..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113692 114..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113692.2847.1prot_M-pyrifera_M_contig113692.2847.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113692 114..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113692.2847.1

>prot_M-pyrifera_M_contig113692.2847.1 ID=prot_M-pyrifera_M_contig113692.2847.1|Name=mRNA_M-pyrifera_M_contig113692.2847.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
DALVEASDAKAYIACASASGSDRFTNSAGIVQGHAFTLLLARRVSDGRGK
TLDMVKVRNPHGRTEWNGKYSDEDIGSWTKRLRTEMDHDPRKSGDDGAWC
MTFADFAANFKVIYIAY
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mRNA from alignment at M-pyrifera_M_contig113692:114..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113692.2847.1 ID=mRNA_M-pyrifera_M_contig113692.2847.1|Name=mRNA_M-pyrifera_M_contig113692.2847.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig113692:114..464- (Macrocystis pyrifera P11B4 male)
GACGCCCTTGTGGAAGCTTCAGACGCAAAAGCATACATTGCGTGTGCATC TGCATCAGGCAGCGATCGTTTCACAAACAGTGCAGGAATTGTGCAAGGTC ATGCTTTCACCCTTCTTCTCGCACGTCGTGTAAGTGATGGTCGTGGCAAG ACACTTGACATGGTCAAGGTTCGCAACCCTCATGGGCGTACTGAATGGAA TGGCAAGTACAGTGATGAAGACATTGGAAGCTGGACAAAACGATTACGCA CAGAAATGGATCATGATCCACGCAAGAGTGGTGATGATGGAGCATGGTGC ATGACATTTGCAGACTTTGCTGCCAACTTCAAGGTGATCTATATTGCTTA C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113692:114..464-

>mRNA_M-pyrifera_M_contig113692.2847.1 ID=mRNA_M-pyrifera_M_contig113692.2847.1|Name=mRNA_M-pyrifera_M_contig113692.2847.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig113692:114..464- (Macrocystis pyrifera P11B4 male)
GACGCCCTTGTGGAAGCTTCAGACGCAAAAGCATACATTGCGTGTGCATC
TGCATCAGGCAGCGATCGTTTCACAAACAGTGCAGGAATTGTGCAAGGTC
ATGCTTTCACCCTTCTTCTCGCACGTCGTGTAAGTGATGGTCGTGGCAAG
ACACTTGACATGGTCAAGGTTCGCAACCCTCATGGGCGTACTGAATGGAA
TGGCAAGTACAGTGATGAAGACATTGGAAGCTGGACAAAACGATTACGCA
CAGAAATGGATCATGATCCACGCAAGAGTGGTGATGATGGAGCATGGTGC
ATGACATTTGCAGACTTTGCTGCCAACTTCAAGGTGATCTATATTGCTTA
CGACGCCCTTGTGGAAGCTTCAGACGCAAAAGCATACATTGCGTGTGCAT
CTGCATCAGGCAGCGATCGTTTCACAAACAGTGCAGGAATTGTGCAAGGT
CATGCTTTCACCCTTCTTCTCGCACGTCGTGTAAGTGATGGTCGTGGCAA
GACACTTGACATGGTCAAGGTTCGCAACCCTCATGGGCGTACTGAATGGA
ATGGCAAGTACAGTGATGAAGACATTGGAAGCTGGACAAAACGATTACGC
ACAGAAATGGATCATGATCCACGCAAGAGTGGTGATGATGGAGCATGGTG
CATGACATTTGCAGACTTTGCTGCCAACTTCAAGGTGATCTATATTGCTT
AC
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