mRNA_M-pyrifera_M_contig11359.2840.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11359.2840.1
Unique NamemRNA_M-pyrifera_M_contig11359.2840.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11359.2840.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.360e-16
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:   49 TASLTTRSLAGAPMLEIK-QPFYVWDLLTVVQLVHPELFTTTEVKCDVVVDGASQGRIVRT 228
            T     R+LAGA +LE + +PF+ WDLLTV QLVHPELFTT++V+CDVVV GASQGR VRT
Sbjct:  246 TKETLLRALAGAHLLETETRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVRT 306
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BLAST of mRNA_M-pyrifera_M_contig11359.2840.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.380e-16
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   70 SLAGAPMLEIK-QPFYVWDLLTVVQLVHPELFTTTEVKCDVVVDGASQGRIVRT 228
            +LAGA +LE K +PF+ WDLLTV QLVHPELFTT++V+CDVV+ GASQGR VRT
Sbjct:  265 ALAGAHLLETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVIGGASQGRTVRT 318
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BLAST of mRNA_M-pyrifera_M_contig11359.2840.1 vs. uniprot
Match: UPI001B374E6B (Nucleoside hydrolase n=2 Tax=Micromonospora sp. C51 TaxID=2824879 RepID=UPI001B374E6B)

HSP 1 Score: 51.6 bits (122), Expect = 1.430e-5
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   97 IKQPFYVWDLLTVVQLVHPELFTTTEVKCDVVVDGASQGRIVR 225
            +  P+  WD L    L  PELFT  +++CDVVVDGAS+GR VR
Sbjct:  245 VGSPYCCWDSLATSYLAAPELFTFDQIRCDVVVDGASEGRTVR 287
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11359.2840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM07_ECTSI2.360e-1667.21Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
A0A6H5JPH9_9PHAE6.380e-1672.22IU_nuc_hydro domain-containing protein n=1 Tax=Ect... [more]
UPI001B374E6B1.430e-553.49Nucleoside hydrolase n=2 Tax=Micromonospora sp. C5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11359contigM-pyrifera_M_contig11359:7685..9209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog2880.D8LM07
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.purine nucleosidase activity
EggNOG OGsCOG1957@1,KOG2938@2759
EC3.2.2.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.018122-CDS-M-pyrifera_M_contig11359:7684..79131622815651.018122-CDS-M-pyrifera_M_contig11359:7684..7913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11359 7685..7913 +
1692277505.28249-CDS-M-pyrifera_M_contig11359:7684..79131692277505.28249-CDS-M-pyrifera_M_contig11359:7684..7913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11359 7685..7913 +
1622815651.0309834-CDS-M-pyrifera_M_contig11359:9160..92071622815651.0309834-CDS-M-pyrifera_M_contig11359:9160..9207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11359 9161..9207 +
1692277505.2968128-CDS-M-pyrifera_M_contig11359:9160..92071692277505.2968128-CDS-M-pyrifera_M_contig11359:9160..9207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11359 9161..9207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11359.2840.1prot_M-pyrifera_M_contig11359.2840.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11359 7685..9207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11359.2840.1

>prot_M-pyrifera_M_contig11359.2840.1 ID=prot_M-pyrifera_M_contig11359.2840.1|Name=mRNA_M-pyrifera_M_contig11359.2840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
STCYHRRRRRCPLPRTTASLTTRSLAGAPMLEIKQPFYVWDLLTVVQLVH
PELFTTTEVKCDVVVDGASQGRIVRTGQPNASGDGQGRSVTV
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mRNA from alignment at M-pyrifera_M_contig11359:7685..9209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11359.2840.1 ID=mRNA_M-pyrifera_M_contig11359.2840.1|Name=mRNA_M-pyrifera_M_contig11359.2840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1525bp|location=Sequence derived from alignment at M-pyrifera_M_contig11359:7685..9209+ (Macrocystis pyrifera P11B4 male)
TCGACCTGTTATCACCGTCGCCGCCGCCGCTGCCCGCTCCCTCGAACCAC
CGCTTCCTTGACTACGAGGTCTCTTGCGGGAGCGCCAATGTTAGAAATCA
AACAACCATTCTATGTGTGGGATCTCCTTACCGTCGTGCAGTTGGTGCAC
CCAGAGCTATTCACGACTACCGAGGTAAAATGCGATGTCGTCGTTGACGG
TGCGAGCCAAGGACGCATCGTGCGAACAGGTAAGAGATTGCTGCTTTCCC
CCAAATCGAAGGTGGAGGGTGTACTCATGTCATGCATGGCCGTAGTCGTA
TGACCATAGACCCTCGCATCCCTACAATTCCGGGACGGAGCACGTCTGAT
TTTCACCGACCAGGCAGACATTGCTTGCACCAAGCGCAAAGCGCCGTGGG
GTGTAGGGCGAGTCGCATAAAGGGCGAGCCGCATCCTACTAATAGCCGCC
TGTGAGACGGACTTGCCTATGGATGACAGCTTCGAATTAACTGTTTTTTT
CTGGTGTGGCCACTTCCAGAGACAGCAATGGAGGCACTATGTACCTGCCT
CGTGGGTGCCGTAACATATACACACTACGTGATACGATCATCCCCCTCGT
GCGGAGTGAAGGTTCTCGACCGCCAGCCGTGGTGATCGCCGAAAACAAAG
GGTACCCTTGGTTGTCCAGGTCACCCAGTGTGAGGCGTGTTTTACAGTGT
CTAGGGGGGGTAGCAAGGCGCCGGCTGTTGATTTGGCCGTGGGGGGGCGG
GGGGGTGTTCTGACGGGTTCGTTGTTGATCTGGCCGGTGCGGGCGTGTCC
TCTTGAGTGATCGGACGGCGGACAGACTGGAATAAAGGGATTTGAGGTGA
TCGTAGCGCCCACGCTAATAACTGTAGAGAGAGGTAGATACTGTGTGTAG
CTGTTGTTGGCGTTGCTGTTGGCGTATTTGCTGTTGTTATTATTGGTGTT
GTGGTTGTCTGCACATCAACTCATCGTGTTTGCCCGTTGACTCGTCGCCG
AATTCTAGGAGTTGTGGTTGCAAGACGGGCTCACTTGAAATATCGGAAGA
TATAGTATGCCCCCTTCCGGAAGAGTGCCTTGTACGATTTCAATCAATCG
CGCACGGCGGGATATCATATACTTTGGACGAAGTATAACGTCCATGGATA
GGGATGTTCCCATTGGCGAACGCGATTTTGTCTCGCTCTGCGCTACTCAT
GCTAGACTTAACAGTTACGAAAACATGGCGCAGGAAGACGGTAGATGCGT
TGAACCCTTACTGAAGCGAGAGCAAGTTTCAGAAGCATGCCCACGACGAG
CTTGGCGAGTTTGATCACGTTCGCGGGCGCAACAATGGGTGGTGCTTTTC
GCTACCCCTGTCGAGTGTGGATCTGGTCGCTACACGACCCCTTCCGAGCA
ACGACCGATAACGCTGCCCTTGGTTTTCGGTCCGTTCGTTATGTCCTATC
GCCGTCACCGCCCGTCTACCTAGCAGGTCAGCCCAACGCGAGTGGCGACG
GTCAAGGTCGAAGCGTGACCGTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11359:7685..9209+

>mRNA_M-pyrifera_M_contig11359.2840.1 ID=mRNA_M-pyrifera_M_contig11359.2840.1|Name=mRNA_M-pyrifera_M_contig11359.2840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig11359:7685..9209+ (Macrocystis pyrifera P11B4 male)
TCGACCTGTTATCACCGTCGCCGCCGCCGCTGCCCGCTCCCTCGAACCAC
CGCTTCCTTGACTACGAGGTCTCTTGCGGGAGCGCCAATGTTAGAAATCA
AACAACCATTCTATGTGTGGGATCTCCTTACCGTCGTGCAGTTGGTGCAC
CCAGAGCTATTCACGACTACCGAGGTAAAATGCGATGTCGTCGTTGACGG
TGCGAGCCAAGGACGCATCGTGCGAACAGTCGACCTGTTATCACCGTCGC
CGCCGCCGCTGCCCGCTCCCTCGAACCACCGCTTCCTTGACTACGAGGTC
TCTTGCGGGAGCGCCAATGTTAGAAATCAAACAACCATTCTATGTGTGGG
ATCTCCTTACCGTCGTGCAGTTGGTGCACCCAGAGCTATTCACGACTACC
GAGGTAAAATGCGATGTCGTCGTTGACGGTGCGAGCCAAGGACGCATCGT
GCGAACAGGTCAGCCCAACGCGAGTGGCGACGGTCAAGGTCGAAGCGTGA
CCGTGGTCAGCCCAACGCGAGTGGCGACGGTCAAGGTCGAAGCGTGACCG
TG
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