mRNA_M-pyrifera_M_contig113574.2836.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig113574.2836.1
Unique Name	mRNA_M-pyrifera_M_contig113574.2836.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A517PYL7_9PLAN (DDE_3 domain-containing protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PYL7_9PLAN)

HSP 1 Score: 259 bits (662), Expect = 2.460e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 375
            WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK
Sbjct:  291 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 415

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A517VKR4_9PLAN (DDE_3 domain-containing protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VKR4_9PLAN)

HSP 1 Score: 233 bits (594), Expect = 1.280e-75
Identity = 111/125 (88.80%), Postives = 118/125 (94.40%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 375
            WVFVVDNLNTHCGAPLV+LVA+QLGI+P  LGKVKR GVLKTMTSRREFLTDP HRIRFVYLP HSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQ+FIEYFNQH+ARPMRWTY G+ T+K
Sbjct:   93 WVFVVDNLNTHCGAPLVELVAQQLGINPAHLGKVKRHGVLKTMTSRREFLTDPTHRIRFVYLPKHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQQFIEYFNQHMARPMRWTYAGYHTKK 217

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A517RN33_9PLAN (DDE_3 domain-containing protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RN33_9PLAN)

HSP 1 Score: 235 bits (599), Expect = 7.250e-74
Identity = 111/125 (88.80%), Postives = 120/125 (96.00%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 375
            WVFVVDNLNTHCGAPLV+LVA+QLGI+P  LGKVKR+GVLKTMTSRR FLT+PAHRIRF+YLP HSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQ FIEYFNQH+ARPMRWTYTGHRT++
Sbjct:  291 WVFVVDNLNTHCGAPLVELVAQQLGINPAHLGKVKRQGVLKTMTSRRAFLTNPAHRIRFIYLPKHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQNFIEYFNQHMARPMRWTYTGHRTKQ 415

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A5A8AYN1_9PLAN (DDE_3 domain-containing protein (Fragment) n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8AYN1_9PLAN)

HSP 1 Score: 214 bits (544), Expect = 1.470e-69
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1

Query:   52 KLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 375
            KLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLT PAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKL+RFIEYFNQHLARPMRW YTGHRTQK
Sbjct:    1 KLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTAPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLRRFIEYFNQHLARPMRWAYTGHRTQK 108

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A5A8BJM3_9PLAN (DDE_3 domain-containing protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BJM3_9PLAN)

HSP 1 Score: 189 bits (480), Expect = 3.110e-59
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1

Query:   94 GKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 375
            GKVKREGVLKTMTSRREFLTDPAHR RFVYLPNHSSWLNQIEIVFGIIKRR LRRGSFTSKQDLIEKL+RFIEYFNQHLARPMRWTYTGHRTQK
Sbjct:   40 GKVKREGVLKTMTSRREFLTDPAHRFRFVYLPNHSSWLNQIEIVFGIIKRRVLRRGSFTSKQDLIEKLRRFIEYFNQHLARPMRWTYTGHRTQK 133

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A7D8YAC1_9PLAN (IS630 family transposase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7D8YAC1_9PLAN)

HSP 1 Score: 184 bits (467), Expect = 1.690e-54
Identity = 83/125 (66.40%), Postives = 101/125 (80.80%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTGHRTQK 375
            WVFVVDNLNTHCG PLV++VA+ LGI    LG+VK+ G+LK M SRR FL+D +HRIR VY+P HSSWLNQIE VFG+I RR +R GSFTS+ DL+EKL RF+ YFN  +A+PM+WTYTG  T+K
Sbjct:  254 WVFVVDNLNTHCGEPLVRMVAKHLGIPASKLGEVKKRGILKDMASRRAFLSDTSHRIRLVYIPKHSSWLNQIEAVFGMINRRVMRGGSFTSRADLMEKLHRFVTYFNDKIAKPMKWTYTGRPTEK 378

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A7C5NFM3_9DELT (Transposase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5NFM3_9DELT)

HSP 1 Score: 152 bits (384), Expect = 3.270e-44
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTG 360
            W+FV+D LNTH    LV+LVAE+  ID D LG   + G+LK+M +R+EFL DP HRIR VY P H+SWLNQIEI F I+ RRAL+R SFTSK DL ++L  FIEYFN  LA+P RWTY G
Sbjct:   90 WIFVMDQLNTHKSEALVRLVAERCDIDDD-LGVKGKRGILKSMATRKEFLEDPEHRIRVVYTPRHASWLNQIEIWFSILARRALKRASFTSKNDLRQRLLDFIEYFNAVLAKPFRWTYAG 208

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A2A4QBM8_9GAMM (IS630 family transposase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A4QBM8_9GAMM)

HSP 1 Score: 148 bits (374), Expect = 9.240e-43
Identity = 68/120 (56.67%), Postives = 88/120 (73.33%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTG 360
            W+FV D L TH    LV+ +AEQ GI  D LG  ++ G+L+ + SR+ FLTD +HRIRFV+ P H SWLNQ+EI FGI+ R+ + +GSFTSK DL  KL RFI+YFN++LA+P RWTY G
Sbjct:   85 WIFVADQLTTHKSESLVRYIAEQCGIQGD-LGVKRKRGILENVPSRQAFLTDASHRIRFVFTPKHCSWLNQVEIWFGILSRKLINQGSFTSKDDLRSKLNRFIDYFNENLAKPYRWTYKG 203

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A6B1BSF4_9BACT (Transposase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1BSF4_9BACT)

HSP 1 Score: 147 bits (370), Expect = 2.960e-42
Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTG 360
            W+F+VDNLNTH    LV+L+A++  ID D LGK    G+LK+M +R  FL D +HRIRFVY P H+SWLNQIE+ F I+ RR L+R SF+SK+DL  ++  FI+YFNQ +A+P +WTYTG
Sbjct:   77 WIFIVDNLNTHQSESLVRLIAQKCEIDND-LGKKGTSGILKSMATRAAFLQDVSHRIRFVYTPKHTSWLNQIELWFSILVRRLLKRASFSSKEDLKARILDFIDYFNQTMAKPFKWTYTG 195

[Close]

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Match: A0A6N8ED70_9GAMM (IS630 family transposase n=4 Tax=Allochromatium palmeri TaxID=231048 RepID=A0A6N8ED70_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 4.980e-42
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1

Query:    1 WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFLTDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQRFIEYFNQHLARPMRWTYTG 360
            W+F+VD LNTH  A LV+ +A++ GID D  GK K  G+L++M SR  FL DPAHRIRFVY P H SWLNQ+EI FGI+ RR L+R  F S  +L ++L  FI++FNQ LA+P RWTY G
Sbjct:   83 WIFIVDQLNTHQSASLVESIAQRCGIDSDLGGKGKT-GILQSMASRAAFLQDPAHRIRFVYTPKHCSWLNQVEIWFGILTRRLLKRARFASTDELKQRLLEFIDFFNQTLAKPFRWTYIG 201

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig113574.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A517PYL7_9PLAN	2.460e-83	100.00	DDE_3 domain-containing protein n=1 Tax=Gimesia ch...	[more]
A0A517VKR4_9PLAN	1.280e-75	88.80	DDE_3 domain-containing protein n=1 Tax=Gimesia al...	[more]
A0A517RN33_9PLAN	7.250e-74	88.80	DDE_3 domain-containing protein n=1 Tax=Gimesia al...	[more]
A0A5A8AYN1_9PLAN	1.470e-69	97.22	DDE_3 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A5A8BJM3_9PLAN	3.110e-59	96.81	DDE_3 domain-containing protein n=1 Tax=Gimesia ch...	[more]
A0A7D8YAC1_9PLAN	1.690e-54	66.40	IS630 family transposase n=1 Tax=Planctomycetaceae...	[more]
A0A7C5NFM3_9DELT	3.270e-44	61.67	Transposase n=1 Tax=Polyangiaceae bacterium TaxID=...	[more]
A0A2A4QBM8_9GAMM	9.240e-43	56.67	IS630 family transposase n=2 Tax=Gammaproteobacter...	[more]
A0A6B1BSF4_9BACT	2.960e-42	56.67	Transposase n=1 Tax=Gemmatimonadetes bacterium Tax...	[more]
A0A6N8ED70_9GAMM	4.980e-42	57.50	IS630 family transposase n=4 Tax=Allochromatium pa...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig113574	contig	M-pyrifera_M_contig113574:202..576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	142.1
Seed ortholog evalue	1.7e-31
Seed eggNOG ortholog	765913.ThidrDRAFT_4544
Hectar predicted targeting category	other localisation
EggNOG free text desc.	DDE superfamily endonuclease
EggNOG OGs	1MW7X@1224,1S900@1236,1WZQJ@135613,COG3335@1,COG3335@2
COG Functional cat.	L
Best tax level	Chromatiales
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	375
Cds size	375
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815650.8674288-CDS-M-pyrifera_M_contig113574:201..576	1622815650.8674288-CDS-M-pyrifera_M_contig113574:201..576	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig113574 202..576 -
1692277505.2074332-CDS-M-pyrifera_M_contig113574:201..576	1692277505.2074332-CDS-M-pyrifera_M_contig113574:201..576	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig113574 202..576 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig113574.2836.1	prot_M-pyrifera_M_contig113574.2836.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig113574 202..576 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig113574:202..576-
coding sequence from alignment at M-pyrifera_M_contig113574:202..576-

protein sequence of mRNA_M-pyrifera_M_contig113574.2836.1

>prot_M-pyrifera_M_contig113574.2836.1 ID=prot_M-pyrifera_M_contig113574.2836.1|Name=mRNA_M-pyrifera_M_contig113574.2836.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
WVFVVDNLNTHCGAPLVKLVAEQLGIDPDTLGKVKREGVLKTMTSRREFL
TDPAHRIRFVYLPNHSSWLNQIEIVFGIIKRRALRRGSFTSKQDLIEKLQ
RFIEYFNQHLARPMRWTYTGHRTQK

mRNA from alignment at M-pyrifera_M_contig113574:202..576-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig113574.2836.1 ID=mRNA_M-pyrifera_M_contig113574.2836.1|Name=mRNA_M-pyrifera_M_contig113574.2836.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig113574:202..576- (Macrocystis pyrifera P11B4 male)
TGGGTGTTCGTGGTCGATAATTTAAATACGCACTGCGGCGCGCCACTGGT
CAAGCTGGTGGCAGAACAGTTGGGTATCGATCCTGACACCCTGGGAAAGG
TCAAACGCGAAGGTGTGCTGAAAACGATGACCAGTCGGCGTGAGTTTCTG
ACCGACCCGGCACATCGCATTCGTTTTGTGTATCTGCCCAACCACAGTTC
CTGGTTGAACCAGATCGAAATCGTGTTCGGCATCATCAAACGCCGCGCAC
TGCGTCGAGGCAGCTTCACTTCCAAACAGGATCTGATCGAGAAATTACAG
CGGTTCATTGAATACTTCAACCAGCATCTGGCCCGACCCATGCGCTGGAC
GTATACCGGCCACCGCACACAGAAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113574:202..576-

>mRNA_M-pyrifera_M_contig113574.2836.1 ID=mRNA_M-pyrifera_M_contig113574.2836.1|Name=mRNA_M-pyrifera_M_contig113574.2836.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig113574:202..576- (Macrocystis pyrifera P11B4 male)
TGGGTGTTCGTGGTCGATAATTTAAATACGCACTGCGGCGCGCCACTGGT
CAAGCTGGTGGCAGAACAGTTGGGTATCGATCCTGACACCCTGGGAAAGG
TCAAACGCGAAGGTGTGCTGAAAACGATGACCAGTCGGCGTGAGTTTCTG
ACCGACCCGGCACATCGCATTCGTTTTGTGTATCTGCCCAACCACAGTTC
CTGGTTGAACCAGATCGAAATCGTGTTCGGCATCATCAAACGCCGCGCAC
TGCGTCGAGGCAGCTTCACTTCCAAACAGGATCTGATCGAGAAATTACAG
CGGTTCATTGAATACTTCAACCAGCATCTGGCCCGACCCATGCGCTGGAC
GTATACCGGCCACCGCACACAGAAATGGGTGTTCGTGGTCGATAATTTAA
ATACGCACTGCGGCGCGCCACTGGTCAAGCTGGTGGCAGAACAGTTGGGT
ATCGATCCTGACACCCTGGGAAAGGTCAAACGCGAAGGTGTGCTGAAAAC
GATGACCAGTCGGCGTGAGTTTCTGACCGACCCGGCACATCGCATTCGTT
TTGTGTATCTGCCCAACCACAGTTCCTGGTTGAACCAGATCGAAATCGTG
TTCGGCATCATCAAACGCCGCGCACTGCGTCGAGGCAGCTTCACTTCCAA
ACAGGATCTGATCGAGAAATTACAGCGGTTCATTGAATACTTCAACCAGC
ATCTGGCCCGACCCATGCGCTGGACGTATACCGGCCACCGCACACAGAAA