mRNA_M-pyrifera_M_contig113568.2833.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113568.2833.1
Unique NamemRNA_M-pyrifera_M_contig113568.2833.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A838QPU3_9BACT (Uncharacterized protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QPU3_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.750e-15
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            GE ++PEE   LLER++ +    + E++  V LWD WP F    G L TEWFLRKRWGLV
Sbjct:   66 GEGLAPEELPDLLERLKARAEEFEEEIVETVTLWDRWPTFIAFVGLLSTEWFLRKRWGLV 125          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A5C6CU60_9BACT (GATase1_like domain-containing protein n=1 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6CU60_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 4.080e-13
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            G  ++PEE   LLER++ +    + EV T+ +LWD WP+   L G L TEWFLRKRWGLV
Sbjct:  700 GAGLAPEELPDLLERLQERFEEFEEEVSTQQSLWDSWPMLTALVGLLSTEWFLRKRWGLV 759          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A5B9Q742_9BACT (Uncharacterized protein n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q742_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 5.580e-13
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            G  ++PEE   LLER++++    + EV T+ +LWD WP+   L G L TEWFLRKRWGLV
Sbjct:  700 GAGLAPEELPDLLERLQDRFEEFEEEVSTQKSLWDSWPMLTALVGLLGTEWFLRKRWGLV 759          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A3L7RZL3_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RZL3_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.420e-12
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   13 SPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            SPEE + +L+ +R +P   D +      LWD WP+F ++ G L TEWFLRKRWGLV
Sbjct:  712 SPEELSEILDDLRTKPSAYDAQEQWSATLWDKWPMFLVMAGLLCTEWFLRKRWGLV 767          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A517U5U4_9BACT (GATase1_like domain-containing protein n=1 Tax=Lacipirellula limnantheis TaxID=2528024 RepID=A0A517U5U4_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 4.960e-12
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            G  ++PEE   LLE+++++    + E++  + LWD WP+     G L TEWFLRKRWGLV
Sbjct:  703 GAWLAPEELPDLLEKLKSRADEFEEELVETITLWDSWPMLLTFAGLLSTEWFLRKRWGLV 762          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A2E0XAW6_9PLAN (GATase1_like domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0XAW6_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 6.780e-12
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            G  ++PEE  +L+E ++ +    + E++ +V LWD W +F  L G L TEWFLRKRWGLV
Sbjct:  701 GAGLAPEELPALIESLQAKSQEFEEEIVNRVTLWDTWWMFLALVGGLSTEWFLRKRWGLV 760          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A5C5ZUR3_9BACT (GATase1_like domain-containing protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZUR3_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-10
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            G +++PEE  +LL  +  +      EV+ +V  WD WP   +  G L TEW+LRKRWGLV
Sbjct:  705 GRALAPEELPALLAELAEEEPMRKQEVIARVTYWDTWPFLLLFVGLLTTEWWLRKRWGLV 764          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A3L7VBY5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7VBY5_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 7.360e-10
Identity = 26/60 (43.33%), Postives = 32/60 (53.33%), Query Frame = 1
Query:    1 GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            G   SPEE   +   I  +P   +         WD WP+F +L  CL +EWFLRKRWGLV
Sbjct:  706 GAVRSPEELADIFAEIGQKPAGFETLEQWSYTPWDKWPMFLLLAACLCSEWFLRKRWGLV 765          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A3L7R2I5_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7R2I5_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 1.380e-9
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 1
Query:   16 PEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            PEE   +   I N+P   +         WD WP+  ++ GCL +EWFLRKRWGLV
Sbjct:  711 PEELPDIFAEIANKPATFETLDQWSYTPWDKWPMLLLIAGCLCSEWFLRKRWGLV 765          
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Match: A0A517SKG5_9PLAN (GATase1_like domain-containing protein n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SKG5_9PLAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.570e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   10 VSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITEWFLRKRWGLV 180
            +SPE F   L+R+ ++ L  ++   T V LWDGWPL  + T  + TEW+LRKR GLV
Sbjct:  711 ISPEAFGEFLDRLLSEGLAAELLKHTTVTLWDGWPLLLVFTLLMSTEWYLRKRRGLV 767          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113568.2833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A838QPU3_9BACT1.750e-1551.67Uncharacterized protein n=1 Tax=Pirellulales bacte... [more]
A0A5C6CU60_9BACT4.080e-1351.67GATase1_like domain-containing protein n=1 Tax=Byt... [more]
A0A5B9Q742_9BACT5.580e-1351.67Uncharacterized protein n=1 Tax=Bythopirellula gok... [more]
A0A3L7RZL3_9BACT1.420e-1250.00Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A517U5U4_9BACT4.960e-1245.00GATase1_like domain-containing protein n=1 Tax=Lac... [more]
A0A2E0XAW6_9PLAN6.780e-1246.67GATase1_like domain-containing protein n=1 Tax=Pla... [more]
A0A5C5ZUR3_9BACT2.110e-1043.33GATase1_like domain-containing protein n=1 Tax=Pse... [more]
A0A3L7VBY5_9BACT7.360e-1043.33Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3L7R2I5_9BACT1.380e-943.64Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
A0A517SKG5_9PLAN2.570e-947.37GATase1_like domain-containing protein n=1 Tax=Cau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113568contigM-pyrifera_M_contig113568:385..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.735278-CDS-M-pyrifera_M_contig113568:384..5671622815650.735278-CDS-M-pyrifera_M_contig113568:384..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113568 385..567 -
1692277505.1565218-CDS-M-pyrifera_M_contig113568:384..5671692277505.1565218-CDS-M-pyrifera_M_contig113568:384..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113568 385..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113568.2833.1prot_M-pyrifera_M_contig113568.2833.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113568 385..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113568.2833.1

>prot_M-pyrifera_M_contig113568.2833.1 ID=prot_M-pyrifera_M_contig113568.2833.1|Name=mRNA_M-pyrifera_M_contig113568.2833.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
GESVSPEEFTSLLERIRNQPLNLDVEVLTKVNLWDGWPLFFMLTGCLITE
WFLRKRWGLV*
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mRNA from alignment at M-pyrifera_M_contig113568:385..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113568.2833.1 ID=mRNA_M-pyrifera_M_contig113568.2833.1|Name=mRNA_M-pyrifera_M_contig113568.2833.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig113568:385..567- (Macrocystis pyrifera P11B4 male)
GGTGAGTCGGTTTCCCCGGAAGAATTCACCAGCTTGTTGGAGCGGATTCG CAATCAACCGCTCAATTTGGATGTTGAAGTGTTGACCAAGGTGAACCTAT GGGACGGTTGGCCTCTGTTCTTCATGCTCACCGGATGCCTGATCACCGAG TGGTTTCTGAGAAAGCGATGGGGCCTGGTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113568:385..567-

>mRNA_M-pyrifera_M_contig113568.2833.1 ID=mRNA_M-pyrifera_M_contig113568.2833.1|Name=mRNA_M-pyrifera_M_contig113568.2833.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig113568:385..567- (Macrocystis pyrifera P11B4 male)
GGTGAGTCGGTTTCCCCGGAAGAATTCACCAGCTTGTTGGAGCGGATTCG
CAATCAACCGCTCAATTTGGATGTTGAAGTGTTGACCAAGGTGAACCTAT
GGGACGGTTGGCCTCTGTTCTTCATGCTCACCGGATGCCTGATCACCGAG
TGGTTTCTGAGAAAGCGATGGGGCCTGGTTTGAGGTGAGTCGGTTTCCCC
GGAAGAATTCACCAGCTTGTTGGAGCGGATTCGCAATCAACCGCTCAATT
TGGATGTTGAAGTGTTGACCAAGGTGAACCTATGGGACGGTTGGCCTCTG
TTCTTCATGCTCACCGGATGCCTGATCACCGAGTGGTTTCTGAGAAAGCG
ATGGGGCCTGGTTTGA
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