mRNA_M-pyrifera_M_contig113561.2831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113561.2831.1
Unique NamemRNA_M-pyrifera_M_contig113561.2831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A6B2L4A7_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4A7_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 9.590e-41
Identity = 67/119 (56.30%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEALK 357
            IIPY+G +L  Y+  +D W ARYPD +P+  +LLACGAT+ST GQLV YPL +VRT LQAQGMP RP ++NG++DCF+K V   GV  LYRGI   F+K++PA  +++ T+EKTK+ L+
Sbjct:  324 IIPYAGVDLTVYSMCKDTWSARYPDQKPNAFVLLACGATSSTCGQLVTYPLVVVRTCLQAQGMPGRPHLYNGMLDCFQKLVTNGGVGALYRGIVPNFMKAVPAISVSYVTYEKTKQYLE 442          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A7S0PAX9_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PAX9_CAFRO)

HSP 1 Score: 148 bits (373), Expect = 1.240e-40
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVV-FNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEALK 357
            I+PYSGTELM ++ LRDA+ AR+PD EP    LLA GA AS  GQ+VA+PLQL RTRLQAQG+P R  V +NG+  C +  V+ +G  GLYRG+  GFLKSIP+CMI+FA FE+ K  L+
Sbjct:  272 IVPYSGTELMIFSLLRDAYAARFPDREPGVATLLASGAVASLAGQVVAFPLQLARTRLQAQGLPGRETVRYNGLAHCLRSVVMRDGFRGLYRGMLPGFLKSIPSCMISFAVFERAKATLR 391          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A5A8CDZ1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CDZ1_CAFRO)

HSP 1 Score: 148 bits (373), Expect = 1.390e-39
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVV-FNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEALK 357
            I+PYSGTELM ++ LRDA+ AR+PD EP    LLA GA AS  GQ+VA+PLQL RTRLQAQG+P R  V +NG+  C +  V+ +G  GLYRG+  GFLKSIP+CMI+FA FE+ K  L+
Sbjct:  435 IVPYSGTELMIFSLLRDAYAARFPDREPGVATLLASGAVASLAGQVVAFPLQLARTRLQAQGLPGRETVRYNGLAHCLRSVVMRDGFRGLYRGMLPGFLKSIPSCMISFAVFERAKATLR 554          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A6B2LCJ2_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCJ2_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 1.200e-37
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEAL 354
            ++PYSG +L  Y+ LRD +   YP   PS   LLACGA +S+ GQLVAYPL ++RTR+Q QGM  RPVV+ G++DC KK   +EG+ G YRGI   F+K+IPA  I++  +EKTK  L
Sbjct:  137 VVPYSGVDLTVYSLLRDLYDRHYPYNNPSAVTLLACGAISSSCGQLVAYPLVVIRTRMQVQGMEDRPVVYTGMLDCLKKIYASEGIRGFYRGILPNFMKAIPAISISYLVYEKTKRYL 254          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A0H5RCR4_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RCR4_9EUKA)

HSP 1 Score: 128 bits (321), Expect = 1.250e-33
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFE 336
            I+PY+G +L  +   R  W +RYP   PS   LL  GA +ST GQLVAYP QL+RTRLQ QGMP R V++ G+ DCF+KT+ ++G+ GLYRG+   FLK++P+  I++A ++
Sbjct:  193 IVPYAGVDLSLFAFFRKTWESRYPHRNPSALQLLGFGAISSTCGQLVAYPFQLIRTRLQCQGMPGRDVIYQGMADCFRKTIESDGLKGLYRGLQPNFLKALPSISISYAIYD 304          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A6A7G479_9CRUS (Carrier superfamily protein n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G479_9CRUS)

HSP 1 Score: 130 bits (327), Expect = 2.100e-33
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEAL 354
            IIPY+G +L  Y  LRD +   YP   PS  ++L  GA +S  GQ++A+P Q +RT+LQAQGMP RPV ++G+ DCF++TV   G+ GLYRGI   F+K++PA  I++  +E+ K+AL
Sbjct:  362 IIPYAGVDLAVYNTLRDTYSEWYPKSRPSALLILTSGAFSSVCGQVIAFPFQCIRTKLQAQGMPGRPVRYSGMFDCFRQTVSENGIRGLYRGILPNFMKAVPAVSISYLVYERVKDAL 479          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A6G0WJC7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJC7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.020e-33
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEAL 354
            I+PY+G +L  +  L++A++A + DV PS   +L  GA +S+ GQ+V+YPLQ+VRT+LQAQGM  RPVVF+G+ DCF K +   G+ GLYRGI   FLKS+PA  I++ATFE  K  L
Sbjct:  235 IVPYAGVDLALFFTLKEAYVAHF-DVAPSVGHVLLFGAVSSSCGQVVSYPLQVVRTKLQAQGMVGRPVVFSGMGDCFFKILQTHGLRGLYRGIVPNFLKSVPAISISYATFESVKNVL 351          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A6H5KPJ7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ7_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.010e-32
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVE--PSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEAL 354
            I+PYSGT+L  +  L+  W+A +P  +  P    LL  GA +ST GQLVAYPLQLVRT+LQAQGMP  P  +    DCF++T+  EGV GLYRG+   FLK++PA  I++A FEK +  L
Sbjct:  217 IVPYSGTDLAMFYTLKARWMAAHPGAKEGPDVMTLLGFGALSSTCGQLVAYPLQLVRTKLQAQGMPGIPHTYTSTADCFRRTLKHEGVQGLYRGLGPNFLKALPAIAISYAVFEKARTKL 336          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A0G4J1S4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J1S4_PLABS)

HSP 1 Score: 126 bits (316), Expect = 6.250e-32
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEALK 357
            IIPY+G +L  +   R  W   YP   PST  LL  GA +ST GQLVAYP QL RTRLQ+Q MP +P+++   +DCF KTV A+G+ GLYRG+   FLK++P+  I++A ++ T   L+
Sbjct:  336 IIPYAGVDLSLFAFFRKTWEIHYPHHNPSTLQLLGFGAMSSTCGQLVAYPFQLARTRLQSQSMPGKPIIYKSFVDCFVKTVKADGLLGLYRGLQPNFLKALPSISISYAVYDLTYRQLE 454          
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Match: A0A024UIL9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIL9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.100e-31
Identity = 60/118 (50.85%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 IIPYSGTELMTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQAQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFATFEKTKEAL 354
            I+PY+G +L  +  L++ +  ++ DV PS   +L  GA +S+ GQ+V+YPLQ+VRT+LQAQGM  RPVVF G+ DCF K + + G+ GLYRGI   FLKS+PA  I++A FE  K+AL
Sbjct:  246 IVPYAGVDLALFFTLKELYTTKF-DVAPSVGHVLVFGAISSSCGQVVSYPLQVVRTKLQAQGMAGRPVVFTGMTDCFVKILQSYGLRGLYRGIVPNFLKSVPAISISYAVFETVKDAL 362          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113561.2831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2L4A7_9EUKA9.590e-4156.30Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S0PAX9_CAFRO1.240e-4059.17Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8CDZ1_CAFRO1.390e-3959.17Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6B2LCJ2_9EUKA1.200e-3752.54Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A0H5RCR4_9EUKA1.250e-3350.00Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A6A7G479_9CRUS2.100e-3348.31Carrier superfamily protein n=2 Tax=Hirondellea gi... [more]
A0A6G0WJC7_9STRA6.020e-3352.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6H5KPJ7_9PHAE1.010e-3251.67EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0G4J1S4_PLABS6.250e-3248.74Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A024UIL9_9STRA1.100e-3150.85Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113561contigM-pyrifera_M_contig113561:2..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue1e-22
Seed eggNOG ortholog157072.XP_008864366.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP transmembrane transporter activity
EggNOG OGsKOG0036@1,KOG0036@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size363
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.6552312-UTR-M-pyrifera_M_contig113561:1..281622815650.6552312-UTR-M-pyrifera_M_contig113561:1..28Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113561 2..28 +
1692277505.1045437-UTR-M-pyrifera_M_contig113561:1..281692277505.1045437-UTR-M-pyrifera_M_contig113561:1..28Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113561 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.6687975-CDS-M-pyrifera_M_contig113561:28..3641622815650.6687975-CDS-M-pyrifera_M_contig113561:28..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113561 29..364 +
1692277505.1151686-CDS-M-pyrifera_M_contig113561:28..3641692277505.1151686-CDS-M-pyrifera_M_contig113561:28..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113561 29..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113561.2831.1prot_M-pyrifera_M_contig113561.2831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113561 29..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113561.2831.1

>prot_M-pyrifera_M_contig113561.2831.1 ID=prot_M-pyrifera_M_contig113561.2831.1|Name=mRNA_M-pyrifera_M_contig113561.2831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MTYTHLRDAWIARYPDVEPSTPILLACGATASTVGQLVAYPLQLVRTRLQ
AQGMPQRPVVFNGVIDCFKKTVVAEGVPGLYRGIFAGFLKSIPACMITFA
TFEKTKEALKIA
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mRNA from alignment at M-pyrifera_M_contig113561:2..364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113561.2831.1 ID=mRNA_M-pyrifera_M_contig113561.2831.1|Name=mRNA_M-pyrifera_M_contig113561.2831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig113561:2..364+ (Macrocystis pyrifera P11B4 male)
ATCATCCCTTACTCAGGCACAGAACTCATGACCTACACTCACCTCCGAGA CGCTTGGATCGCCAGGTATCCCGACGTGGAGCCCTCCACGCCCATCCTCC TCGCATGCGGCGCAACAGCATCCACCGTCGGACAGCTCGTCGCTTACCCA CTCCAGCTCGTGCGCACAAGACTGCAGGCGCAAGGCATGCCGCAGCGGCC CGTGGTCTTCAACGGCGTCATCGACTGCTTCAAGAAAACCGTAGTCGCAG AAGGGGTGCCAGGACTCTACAGAGGAATCTTCGCGGGCTTCCTAAAGTCC ATCCCAGCCTGCATGATCACATTTGCAACCTTTGAAAAGACCAAAGAAGC CCTTAAAATCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113561:2..364+

>mRNA_M-pyrifera_M_contig113561.2831.1 ID=mRNA_M-pyrifera_M_contig113561.2831.1|Name=mRNA_M-pyrifera_M_contig113561.2831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig113561:2..364+ (Macrocystis pyrifera P11B4 male)
ATGACCTACACTCACCTCCGAGACGCTTGGATCGCCAGGTATCCCGACGT
GGAGCCCTCCACGCCCATCCTCCTCGCATGCGGCGCAACAGCATCCACCG
TCGGACAGCTCGTCGCTTACCCACTCCAGCTCGTGCGCACAAGACTGCAG
GCGCAAGGCATGCCGCAGCGGCCCGTGGTCTTCAACGGCGTCATCGACTG
CTTCAAGAAAACCGTAGTCGCAGAAGGGGTGCCAGGACTCTACAGAGGAA
TCTTCGCGGGCTTCCTAAAGTCCATCCCAGCCTGCATGATCACATTTGCA
ACCTTTGAAAAGACCAAAGAAGCCCTTAAAATCGCAATGACCTACACTCA
CCTCCGAGACGCTTGGATCGCCAGGTATCCCGACGTGGAGCCCTCCACGC
CCATCCTCCTCGCATGCGGCGCAACAGCATCCACCGTCGGACAGCTCGTC
GCTTACCCACTCCAGCTCGTGCGCACAAGACTGCAGGCGCAAGGCATGCC
GCAGCGGCCCGTGGTCTTCAACGGCGTCATCGACTGCTTCAAGAAAACCG
TAGTCGCAGAAGGGGTGCCAGGACTCTACAGAGGAATCTTCGCGGGCTTC
CTAAAGTCCATCCCAGCCTGCATGATCACATTTGCAACCTTTGAAAAGAC
CAAAGAAGCCCTTAAAATCGCA
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