mRNA_M-pyrifera_M_contig113388.2798.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113388.2798.1
Unique NamemRNA_M-pyrifera_M_contig113388.2798.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113388.2798.1 vs. uniprot
Match: A0A5A8CN16_CAFRO (Uncharacterized protein n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CN16_CAFRO)

HSP 1 Score: 60.1 bits (144), Expect = 2.690e-8
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   25 ARIAKAKAAMTEATKESTTILEEVARLTAEQQSLERELDSAGGGVEAMRKEELRRAHDEAERAALLDLVRRQAARRRELVAQIDVLRRKSGSLYGP 312
            AR++ ++  + EAT+E T +LE ++ L AE+Q LER L + G      R +E + A   AERA L  LV  QAA+  E+ A+I +L RK GS+YGP
Sbjct: 2082 ARLSASREDLVEATREGTRLLERLSELAAERQRLERALKAGGTAGLTARDDEAKEAAAAAERARLESLVGAQAAQIAEIRAEIGILSRKDGSVYGP 2177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113388.2798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8CN16_CAFRO2.690e-843.75Uncharacterized protein n=7 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113388contigM-pyrifera_M_contig113388:44..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.0079436-CDS-M-pyrifera_M_contig113388:43..3551622815649.0079436-CDS-M-pyrifera_M_contig113388:43..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113388 44..355 +
1692277504.418319-CDS-M-pyrifera_M_contig113388:43..3551692277504.418319-CDS-M-pyrifera_M_contig113388:43..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113388 44..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113388.2798.1prot_M-pyrifera_M_contig113388.2798.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113388 44..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113388.2798.1

>prot_M-pyrifera_M_contig113388.2798.1 ID=prot_M-pyrifera_M_contig113388.2798.1|Name=mRNA_M-pyrifera_M_contig113388.2798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
ERAVNRIKARIAKAKAAMTEATKESTTILEEVARLTAEQQSLERELDSAG
GGVEAMRKEELRRAHDEAERAALLDLVRRQAARRRELVAQIDVLRRKSGS
LYGP
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mRNA from alignment at M-pyrifera_M_contig113388:44..355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113388.2798.1 ID=mRNA_M-pyrifera_M_contig113388.2798.1|Name=mRNA_M-pyrifera_M_contig113388.2798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig113388:44..355+ (Macrocystis pyrifera P11B4 male)
GAACGTGCAGTGAACCGTATCAAGGCAAGAATTGCAAAGGCCAAAGCTGC
AATGACTGAAGCAACAAAAGAATCCACTACCATCCTTGAAGAAGTTGCAC
GCCTTACAGCAGAACAACAATCACTTGAAAGAGAACTTGATTCAGCAGGT
GGTGGAGTAGAAGCCATGCGAAAAGAAGAACTCCGCCGTGCACATGATGA
AGCAGAACGTGCAGCTCTCCTTGATCTCGTACGAAGACAAGCAGCACGAC
GAAGAGAATTGGTAGCCCAAATTGATGTCCTCCGAAGAAAGTCAGGATCA
TTGTATGGCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113388:44..355+

>mRNA_M-pyrifera_M_contig113388.2798.1 ID=mRNA_M-pyrifera_M_contig113388.2798.1|Name=mRNA_M-pyrifera_M_contig113388.2798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig113388:44..355+ (Macrocystis pyrifera P11B4 male)
GAACGTGCAGTGAACCGTATCAAGGCAAGAATTGCAAAGGCCAAAGCTGC
AATGACTGAAGCAACAAAAGAATCCACTACCATCCTTGAAGAAGTTGCAC
GCCTTACAGCAGAACAACAATCACTTGAAAGAGAACTTGATTCAGCAGGT
GGTGGAGTAGAAGCCATGCGAAAAGAAGAACTCCGCCGTGCACATGATGA
AGCAGAACGTGCAGCTCTCCTTGATCTCGTACGAAGACAAGCAGCACGAC
GAAGAGAATTGGTAGCCCAAATTGATGTCCTCCGAAGAAAGTCAGGATCA
TTGTATGGCCCTGAACGTGCAGTGAACCGTATCAAGGCAAGAATTGCAAA
GGCCAAAGCTGCAATGACTGAAGCAACAAAAGAATCCACTACCATCCTTG
AAGAAGTTGCACGCCTTACAGCAGAACAACAATCACTTGAAAGAGAACTT
GATTCAGCAGGTGGTGGAGTAGAAGCCATGCGAAAAGAAGAACTCCGCCG
TGCACATGATGAAGCAGAACGTGCAGCTCTCCTTGATCTCGTACGAAGAC
AAGCAGCACGACGAAGAGAATTGGTAGCCCAAATTGATGTCCTCCGAAGA
AAGTCAGGATCATTGTATGGCCCT
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