mRNA_M-pyrifera_M_contig113384.2797.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113384.2797.1
Unique NamemRNA_M-pyrifera_M_contig113384.2797.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7R9UFD4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.130e-19
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   28 LAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            LA+EG+R++HPVV+VPG+VST LE+WKG PCA R+FRQ+IWG    + +  ++T+CW+  MLLD
Sbjct:  127 LAEEGLRKKHPVVLVPGVVSTGLEVWKGDPCALRYFRQRIWGTMTMVQQFMLDTKCWLKHMLLD 190
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7S1XSM8_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSM8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.010e-18
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   13 PGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            PGE L A++G+ R+HPV++VPGIVST LE+WKG PCARR+FRQ+IWG    + +  ++T+CW+  + LD
Sbjct:  142 PGERL-AEKGLTRKHPVILVPGIVSTGLEIWKGDPCARRYFRQRIWGTMTMVQQFLLDTKCWLKHISLD 209
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7S0M0D2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M0D2_9CRYP)

HSP 1 Score: 83.2 bits (204), Expect = 4.960e-18
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   10 RPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            RPG+   A  G+R+RHPVV+VPGIV+T LELW+G PCA+  FRQ++WG    + ++ +NT+CW+  M L+
Sbjct:   68 RPGQRA-AVSGLRKRHPVVLVPGIVTTGLELWEGEPCAKAFFRQRMWGTMTMVQQMMLNTKCWLRHMALN 136
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7S0WGL5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WGL5_9CRYP)

HSP 1 Score: 78.6 bits (192), Expect = 3.820e-17
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   40 GVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            GVR++HPVV+VPGIV+T LELW+G  CA+++FRQ++WG    +  + +NT CW+  M L+
Sbjct:   14 GVRKKHPVVMVPGIVTTGLELWQGEECAKKYFRQRMWGTMTMVHNMLLNTRCWLRHMALN 73
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7S1CQX3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQX3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.480e-16
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   10 RPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            RPG+ +LA  G + +HPVV+VPG+ ST LELW+  PC   HFR+++WG  L +  L +N +CWM+ + LD
Sbjct:  111 RPGD-VLAGIGAKAKHPVVIVPGVTSTGLELWESRPCLDNHFRERVWGDQLMVRMLLLNLKCWMEHIRLD 179
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7S2WTD7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTD7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.030e-16
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   10 RPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            RPG   LA EG+  RHPV++VPGIV+T LE+WKG  C + +FRQ++WG +  LA+   + ECW+  M LD
Sbjct:  122 RPG-MKLAAEGMASRHPVLMVPGIVTTGLEIWKGSGCGKDYFRQRVWGTSSMLAQFLRDKECWLQHMALD 190
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: H6V961_CHLRE (Phospholipid:diacylglycerol transferase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=H6V961_CHLRE)

HSP 1 Score: 81.3 bits (199), Expect = 2.790e-16
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 AAWRPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            A  RPG+ L+A+ G R +HPVV+VPG V++ LELW+GLPC +R+FRQ++WG    +     +  CW   M LD
Sbjct:  237 AGLRPGQ-LMARRGYRAKHPVVIVPGFVTSGLELWRGLPCGQRYFRQRMWGTLAMVQAFLTDAACWFRHMELD 308
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A836C063_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C063_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 5.210e-16
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 AAWRPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            AA RPG   +A++G R +HPVV+VPG V++ LELW+GLPC +R+FRQ++WG    +     +  CW   M LD
Sbjct:  206 AAVRPG-LAMARKGYRAKHPVVIVPGFVTSGLELWRGLPCGQRYFRQRMWGTLAMVQAFLTDAACWFRHMELD 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: A0A7S0Z0P7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z0P7_9CRYP)

HSP 1 Score: 78.6 bits (192), Expect = 6.170e-16
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   40 GVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            GVR++HPVV+VPGIV+T LELW+G  CA+++FRQ++WG    +  + +NT CW+  M L+
Sbjct:   14 GVRKKHPVVMVPGIVTTGLELWQGEECAKKYFRQRMWGTMTMVHNMLLNTRCWLRHMALN 73
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BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Match: L1JG30_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JG30_GUITC)

HSP 1 Score: 80.1 bits (196), Expect = 6.950e-16
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   10 RPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIWGGALTLAKLTMNTECWMDTMLLD 219
            RPG  L  ++GVR +HPVV++PGIV+T LELW G  CA+ +FRQ++WG    +  + +NT+CW+  M LD
Sbjct:   16 RPGVNL--QDGVRAKHPVVMLPGIVTTGLELWSGEDCAKGYFRQRMWGTMTMVQNMLLNTKCWLRHMALD 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113384.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UFD4_9STRA2.130e-1957.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XSM8_9STRA1.010e-1855.07Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S0M0D2_9CRYP4.960e-1851.43Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0WGL5_9CRYP3.820e-1751.67Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1CQX3_9STRA1.480e-1648.57Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2WTD7_9STRA2.030e-1651.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
H6V961_CHLRE2.790e-1647.95Phospholipid:diacylglycerol transferase n=1 Tax=Ch... [more]
A0A836C063_9CHLO5.210e-1647.95Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S0Z0P7_9CRYP6.170e-1651.67Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JG30_GUITC6.950e-1650.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113384contigM-pyrifera_M_contig113384:10..228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog55529.EKX47055
Preferred nameLRO1
KEGG rclassRC00037,RC00041
KEGG koko:K00679
KEGG ReactionR05333
KEGG Pathwayko00561,map00561
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005811,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0006996,GO:0008080,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0010876,GO:0010883,GO:0010884,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019432,GO:0019915,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0033036,GO:0034389,GO:0034641,GO:0042175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046027,GO:0046339,GO:0046460,GO:0046463,GO:0046486,GO:0048471,GO:0048518,GO:0050789,GO:0051179,GO:0051235,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071840,GO:0097038,GO:0098827,GO:0140042,GO:1901564,GO:1901576,GO:1905952,GO:1905954
EggNOG free text desc.O-acyltransferase activity
EggNOG OGsKOG2369@1,KOG2369@2759
EC2.3.1.158
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.9617264-CDS-M-pyrifera_M_contig113384:9..2281622815648.9617264-CDS-M-pyrifera_M_contig113384:9..228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113384 10..228 -
1692277504.4026608-CDS-M-pyrifera_M_contig113384:9..2281692277504.4026608-CDS-M-pyrifera_M_contig113384:9..228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113384 10..228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113384.2797.1prot_M-pyrifera_M_contig113384.2797.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113384 10..228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113384.2797.1

>prot_M-pyrifera_M_contig113384.2797.1 ID=prot_M-pyrifera_M_contig113384.2797.1|Name=mRNA_M-pyrifera_M_contig113384.2797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
AAWRPGEFLLAKEGVRRRHPVVVVPGIVSTPLELWKGLPCARRHFRQQIW
GGALTLAKLTMNTECWMDTMLLD
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mRNA from alignment at M-pyrifera_M_contig113384:10..228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113384.2797.1 ID=mRNA_M-pyrifera_M_contig113384.2797.1|Name=mRNA_M-pyrifera_M_contig113384.2797.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig113384:10..228- (Macrocystis pyrifera P11B4 male)
GCTGCTTGGCGGCCTGGTGAGTTTTTGCTGGCCAAGGAAGGGGTGCGGCG
TCGACACCCCGTGGTGGTGGTGCCGGGCATCGTGTCGACGCCGCTGGAGC
TGTGGAAGGGCCTTCCATGCGCGAGGCGGCATTTTCGGCAGCAAATTTGG
GGAGGCGCCCTCACTCTGGCCAAGCTGACCATGAACACCGAGTGCTGGAT
GGACACCATGCTGCTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113384:10..228-

>mRNA_M-pyrifera_M_contig113384.2797.1 ID=mRNA_M-pyrifera_M_contig113384.2797.1|Name=mRNA_M-pyrifera_M_contig113384.2797.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig113384:10..228- (Macrocystis pyrifera P11B4 male)
GCTGCTTGGCGGCCTGGTGAGTTTTTGCTGGCCAAGGAAGGGGTGCGGCG
TCGACACCCCGTGGTGGTGGTGCCGGGCATCGTGTCGACGCCGCTGGAGC
TGTGGAAGGGCCTTCCATGCGCGAGGCGGCATTTTCGGCAGCAAATTTGG
GGAGGCGCCCTCACTCTGGCCAAGCTGACCATGAACACCGAGTGCTGGAT
GGACACCATGCTGCTGGACGCTGCTTGGCGGCCTGGTGAGTTTTTGCTGG
CCAAGGAAGGGGTGCGGCGTCGACACCCCGTGGTGGTGGTGCCGGGCATC
GTGTCGACGCCGCTGGAGCTGTGGAAGGGCCTTCCATGCGCGAGGCGGCA
TTTTCGGCAGCAAATTTGGGGAGGCGCCCTCACTCTGGCCAAGCTGACCA
TGAACACCGAGTGCTGGATGGACACCATGCTGCTGGAC
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