mRNA_M-pyrifera_M_contig101335.279.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101335.279.1
Unique NamemRNA_M-pyrifera_M_contig101335.279.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101335.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101335contigM-pyrifera_M_contig101335:77..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.0504258-CDS-M-pyrifera_M_contig101335:76..3881622815511.0504258-CDS-M-pyrifera_M_contig101335:76..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101335 77..388 -
1692277444.278549-CDS-M-pyrifera_M_contig101335:76..3881692277444.278549-CDS-M-pyrifera_M_contig101335:76..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101335 77..388 -
1622815511.060909-CDS-M-pyrifera_M_contig101335:440..6711622815511.060909-CDS-M-pyrifera_M_contig101335:440..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101335 441..671 -
1692277444.2883961-CDS-M-pyrifera_M_contig101335:440..6711692277444.2883961-CDS-M-pyrifera_M_contig101335:440..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101335 441..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101335.279.1prot_M-pyrifera_M_contig101335.279.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101335 77..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101335.279.1

>prot_M-pyrifera_M_contig101335.279.1 ID=prot_M-pyrifera_M_contig101335.279.1|Name=mRNA_M-pyrifera_M_contig101335.279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
NLPKLEYLYLSRNRLVSLTAGADDGCLPDALRLLDVSRNSISCLDLPELP
QLRYLKASNNDISQLGESFGMLMASLEHLDLQRNRLEVFPVTLCCCVSLS
CLLLNDNRIEFLPPELGLAMPNLELLDISRNKIITTAGLESATKLRIIRA
GQNQISQLPNWSEMLMSLTELTVLDLNQNQI
back to top

mRNA from alignment at M-pyrifera_M_contig101335:77..671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101335.279.1 ID=mRNA_M-pyrifera_M_contig101335.279.1|Name=mRNA_M-pyrifera_M_contig101335.279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=595bp|location=Sequence derived from alignment at M-pyrifera_M_contig101335:77..671- (Macrocystis pyrifera P11B4 male)
AACCTACCCAAGCTGGAGTACCTCTACCTCTCCAGGAACCGTCTCGTCTC
CCTTACCGCCGGGGCGGATGATGGGTGTCTGCCAGACGCTCTTCGCCTTC
TTGATGTATCAAGAAACAGCATATCTTGCCTCGACTTGCCCGAACTTCCG
CAGTTGCGCTACCTGAAGGCCAGCAACAACGACATCAGCCAGCTGGGAGA
GAGTTTTGGCATGCTGATGGCCTCTCTGGAGGTACGAACCGCTTGAACAA
TTGAGGCAGGAGCCGGCGACTAACGATGCGCAGCACCTTGACCTTCAACG
CAACAGGCTCGAGGTTTTCCCTGTCACTCTGTGCTGCTGTGTTTCTCTCT
CTTGCCTTCTCCTCAACGACAACCGTATCGAGTTCCTCCCTCCTGAGCTG
GGCCTAGCAATGCCCAACCTCGAGCTGCTCGACATCAGCAGGAACAAGAT
CATCACCACTGCAGGCCTCGAGTCGGCGACGAAGCTGCGCATTATTCGGG
CAGGCCAGAACCAGATCTCGCAGTTGCCCAACTGGAGTGAGATGCTGATG
AGCCTGACGGAGCTCACGGTTTTGGATTTGAACCAGAACCAGATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101335:77..671-

>mRNA_M-pyrifera_M_contig101335.279.1 ID=mRNA_M-pyrifera_M_contig101335.279.1|Name=mRNA_M-pyrifera_M_contig101335.279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig101335:77..671- (Macrocystis pyrifera P11B4 male)
AACCTACCCAAGCTGGAGTACCTCTACCTCTCCAGGAACCGTCTCGTCTC
CCTTACCGCCGGGGCGGATGATGGGTGTCTGCCAGACGCTCTTCGCCTTC
TTGATGTATCAAGAAACAGCATATCTTGCCTCGACTTGCCCGAACTTCCG
CAGTTGCGCTACCTGAAGGCCAGCAACAACGACATCAGCCAGCTGGGAGA
GAGTTTTGGCATGCTGATGGCCTCTCTGGAGAACCTACCCAAGCTGGAGT
ACCTCTACCTCTCCAGGAACCGTCTCGTCTCCCTTACCGCCGGGGCGGAT
GATGGGTGTCTGCCAGACGCTCTTCGCCTTCTTGATGTATCAAGAAACAG
CATATCTTGCCTCGACTTGCCCGAACTTCCGCAGTTGCGCTACCTGAAGG
CCAGCAACAACGACATCAGCCAGCTGGGAGAGAGTTTTGGCATGCTGATG
GCCTCTCTGGAGCACCTTGACCTTCAACGCAACAGGCTCGAGGTTTTCCC
TGTCACTCTGTGCTGCTGTGTTTCTCTCTCTTGCCTTCTCCTCAACGACA
ACCGTATCGAGTTCCTCCCTCCTGAGCTGGGCCTAGCAATGCCCAACCTC
GAGCTGCTCGACATCAGCAGGAACAAGATCATCACCACTGCAGGCCTCGA
GTCGGCGACGAAGCTGCGCATTATTCGGGCAGGCCAGAACCAGATCTCGC
AGTTGCCCAACTGGAGTGAGATGCTGATGAGCCTGACGGAGCTCACGGTT
TTGGATTTGAACCAGAACCAGATCCACCTTGACCTTCAACGCAACAGGCT
CGAGGTTTTCCCTGTCACTCTGTGCTGCTGTGTTTCTCTCTCTTGCCTTC
TCCTCAACGACAACCGTATCGAGTTCCTCCCTCCTGAGCTGGGCCTAGCA
ATGCCCAACCTCGAGCTGCTCGACATCAGCAGGAACAAGATCATCACCAC
TGCAGGCCTCGAGTCGGCGACGAAGCTGCGCATTATTCGGGCAGGCCAGA
ACCAGATCTCGCAGTTGCCCAACTGGAGTGAGATGCTGATGAGCCTGACG
GAGCTCACGGTTTTGGATTTGAACCAGAACCAGATC
back to top