mRNA_M-pyrifera_M_contig113331.2784.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113331.2784.1
Unique NamemRNA_M-pyrifera_M_contig113331.2784.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: A0A0B6Z512_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z512_9EUPU)

HSP 1 Score: 69.7 bits (169), Expect = 1.110e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    7 TLVNEIENGLSNDGDCKVCFDAKIDCVLFPCKHSCMCHECATTV--VENFPCPICRQPVAEVVKIFVS 204
            T+   IE+G S   DCKVC++  I+CVL+ C H C+C ECA T+  V+   CPICRQP+ +V+KI+ S
Sbjct:  192 TMQGPIEDGAS---DCKVCWERVINCVLYTCGHMCLCFECAMTIRNVKGL-CPICRQPIVDVIKIYKS 255
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: T1F0U6_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1F0U6_HELRO)

HSP 1 Score: 67.0 bits (162), Expect = 2.430e-11
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   43 DGDCKVCFDAKIDCVLFPCKHSCMCHECATTVVE--NFPCPICRQPVAEVVKIFVS 204
            + +C VCF+   DCVL+ C H CMC+ECA  V E  +  CPICRQP+ +++KI+ S
Sbjct:  727 NNECSVCFEKAPDCVLYMCGHMCMCYECALVVKEYKDAQCPICRQPIKDIIKIYRS 782
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: A0A1S3KE31_LINUN (protein neuralized isoform X2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KE31_LINUN)

HSP 1 Score: 63.9 bits (154), Expect = 2.910e-10
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   40 NDGDCKVCFDAKIDCVLFPCKHSCMCHECATTVV--ENFPCPICRQPVAEVVKIFVS 204
            N  +C VC++  +D VL+ C H CMC+ CA  VV  +   CPICRQP+ +VVKI+ S
Sbjct:  437 NPNECTVCYENPVDSVLYKCGHMCMCYNCAYDVVNQQGSLCPICRQPIVDVVKIYRS 493
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: A0A1S3KET7_LINUN (protein neuralized isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KET7_LINUN)

HSP 1 Score: 63.9 bits (154), Expect = 2.930e-10
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   40 NDGDCKVCFDAKIDCVLFPCKHSCMCHECATTVV--ENFPCPICRQPVAEVVKIFVS 204
            N  +C VC++  +D VL+ C H CMC+ CA  VV  +   CPICRQP+ +VVKI+ S
Sbjct:  539 NPNECTVCYENPVDSVLYKCGHMCMCYNCAYDVVNQQGSLCPICRQPIVDVVKIYRS 595
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: A0A2C9K4A1_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K4A1_BIOGL)

HSP 1 Score: 63.2 bits (152), Expect = 4.610e-10
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   22 IENGLSNDGDCKVCFDAKIDCVLFPCKHSCMCHECATTVV-ENFPCPICRQPVAEVVKIFVS 204
            +E+G S   DCKVC++  I+ VL+ C H C+C +CATT+  E   CPICRQ + +V+KI+ S
Sbjct:  267 LEDGAS---DCKVCWEKSINSVLYTCGHMCLCFDCATTIRNEKGLCPICRQTIQDVIKIYRS 325
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: UPI00065C0515 (protein neuralized n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065C0515)

HSP 1 Score: 62.0 bits (149), Expect = 1.390e-9
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   49 DCKVCFDAKIDCVLFPCKHSCMCHECATTV-VENFPCPICRQPVAEVVKIFVS 204
            DCKVC++  I+CVL+ C H C+C +CA  +  E   CPICRQ + +V+KI+ S
Sbjct:  472 DCKVCWERSINCVLYTCGHMCLCFDCAVHIRSEKGLCPICRQEIVDVIKIYRS 524
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: UPI001B8874EC (protein neuralized-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8874EC)

HSP 1 Score: 61.2 bits (147), Expect = 2.600e-9
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 MNTLVNEIENGLSND-------GDCKVCFDAKIDCVLFPCKHSCMCHECATTVV--ENFPCPICRQPVAEVVKIFVS 204
            M+   + +++G S+D        +CKVC +  ++CVL+ C H CMC+ CA  V   +   CPICRQP+ +V+K + S
Sbjct:  477 MSMPTSPVDSGRSSDCLLLDETNECKVCCEQPVNCVLYTCGHMCMCYSCAMAVKVQKGGLCPICRQPIQDVIKTYRS 553
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: UPI001EE5891C (protein neuralized-like isoform X2 n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EE5891C)

HSP 1 Score: 61.2 bits (147), Expect = 2.610e-9
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   49 DCKVCFDAKIDCVLFPCKHSCMCHECATTVVENFP--CPICRQPVAEVVKIFVS 204
            +C VC++ +++CVL+ C H CMC+ECA  V ++    CPICRQ + +V+KI+ S
Sbjct:  526 ECTVCYERQVNCVLYTCGHMCMCYECAIAVRKDKGGLCPICRQQIKDVIKIYRS 579
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BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: UPI001EB059D4 (uncharacterized protein LOC124116157 isoform X1 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB059D4)

HSP 1 Score: 61.2 bits (147), Expect = 2.610e-9
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   49 DCKVCFDAKIDCVLFPCKHSCMCHECATTVVENFP--CPICRQPVAEVVKIFVS 204
            +C VC++ +++CVL+ C H CMC+ECA  V ++    CPICRQ + +V+KI+ S
Sbjct:  542 ECTVCYERQVNCVLYTCGHMCMCYECAIAVRKDKGGLCPICRQQIKDVIKIYRS 595
[Close]
BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Match: UPI001EE5121A (uncharacterized protein LOC124278518 isoform X1 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5121A)

HSP 1 Score: 61.2 bits (147), Expect = 2.630e-9
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   49 DCKVCFDAKIDCVLFPCKHSCMCHECATTVVENFP--CPICRQPVAEVVKIFVS 204
            +C VC++ +++CVL+ C H CMC+ECA  V ++    CPICRQ + +V+KI+ S
Sbjct:  664 ECTVCYERQVNCVLYTCGHMCMCYECAIAVRKDKGGLCPICRQQIKDVIKIYRS 717
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113331.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B6Z512_9EUPU1.110e-1250.00Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
T1F0U6_HELRO2.430e-1150.00Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
A0A1S3KE31_LINUN2.910e-1049.12protein neuralized isoform X2 n=1 Tax=Lingula ungu... [more]
A0A1S3KET7_LINUN2.930e-1049.12protein neuralized isoform X1 n=1 Tax=Lingula ungu... [more]
A0A2C9K4A1_BIOGL4.610e-1048.39Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
UPI00065C05151.390e-949.06protein neuralized n=1 Tax=Aplysia californica Tax... [more]
UPI001B8874EC2.600e-937.66protein neuralized-like n=1 Tax=Gigantopelta aegis... [more]
UPI001EE5891C2.610e-946.30protein neuralized-like isoform X2 n=4 Tax=Halioti... [more]
UPI001EB059D42.610e-946.30uncharacterized protein LOC124116157 isoform X1 n=... [more]
UPI001EE5121A2.630e-946.30uncharacterized protein LOC124278518 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113331contigM-pyrifera_M_contig113331:267..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog6412.HelroP168671
Preferred nameNEURL1B
KEGG koko:K01931,ko:K15689,ko:K16782
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001101,GO:0001578,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006417,GO:0006464,GO:0006513,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007176,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007399,GO:0007589,GO:0007595,GO:0008104,GO:0008150,GO:0008152,GO:0008285,GO:0008593,GO:0009719,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010469,GO:0010556,GO:0010562,GO:0010604,GO:0010608,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0012505,GO:0014069,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016567,GO:0016740,GO:0016874,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0030425,GO:0030879,GO:0031323,GO:0031325,GO:0031326,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0032268,GO:0032270,GO:0032279,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0033365,GO:0033674,GO:0034248,GO:0034613,GO:0035082,GO:0036211,GO:0036477,GO:0040011,GO:0042058,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043197,GO:0043200,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043412,GO:0043549,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044309,GO:0044424,GO:0044444,GO:0044456,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045182,GO:0045183,GO:0045184,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045741,GO:0045742,GO:0045746,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0048167,GO:0048168,GO:0048169,GO:0048170,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048699,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048870,GO:0050730,GO:0050731,GO:0050767,GO:0050769,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0050878,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051489,GO:0051491,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060271,GO:0060284,GO:0060491,GO:0060998,GO:0060999,GO:0061097,GO:0061098,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070086,GO:0070647,GO:0070727,GO:0070887,GO:0070925,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0080090,GO:0090128,GO:0090129,GO:0097440,GO:0097447,GO:0097458,GO:0097708,GO:0097722,GO:0098657,GO:0098794,GO:0098984,GO:0099177,GO:0099572,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0140096,GO:1900006,GO:1901184,GO:1901186,GO:1901564,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000112,GO:2000273
EggNOG free text desc.translation factor activity, non-nucleic acid binding
EggNOG OGs38I58@33154,3BCD8@33208,3CWYJ@33213,KOG4172@1,KOG4172@2759,KOG4625@1,KOG4625@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002360.2
EC2.3.2.27
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.4597874-CDS-M-pyrifera_M_contig113331:266..4731622815648.4597874-CDS-M-pyrifera_M_contig113331:266..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113331 267..473 -
1692277504.2211013-CDS-M-pyrifera_M_contig113331:266..4731692277504.2211013-CDS-M-pyrifera_M_contig113331:266..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113331 267..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113331.2784.1prot_M-pyrifera_M_contig113331.2784.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113331 267..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113331.2784.1

>prot_M-pyrifera_M_contig113331.2784.1 ID=prot_M-pyrifera_M_contig113331.2784.1|Name=mRNA_M-pyrifera_M_contig113331.2784.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MNTLVNEIENGLSNDGDCKVCFDAKIDCVLFPCKHSCMCHECATTVVENF
PCPICRQPVAEVVKIFVS*
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mRNA from alignment at M-pyrifera_M_contig113331:267..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113331.2784.1 ID=mRNA_M-pyrifera_M_contig113331.2784.1|Name=mRNA_M-pyrifera_M_contig113331.2784.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig113331:267..473- (Macrocystis pyrifera P11B4 male)
ATGAACACGCTCGTGAACGAGATCGAGAACGGCCTCTCCAACGACGGCGA
CTGCAAGGTGTGCTTCGACGCCAAGATCGACTGCGTGCTCTTCCCTTGCA
AGCACTCTTGCATGTGCCACGAGTGCGCCACCACCGTGGTCGAGAACTTC
CCTTGCCCCATCTGCAGGCAGCCCGTCGCCGAGGTCGTCAAGATCTTCGT
GTCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113331:267..473-

>mRNA_M-pyrifera_M_contig113331.2784.1 ID=mRNA_M-pyrifera_M_contig113331.2784.1|Name=mRNA_M-pyrifera_M_contig113331.2784.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig113331:267..473- (Macrocystis pyrifera P11B4 male)
ATGAACACGCTCGTGAACGAGATCGAGAACGGCCTCTCCAACGACGGCGA
CTGCAAGGTGTGCTTCGACGCCAAGATCGACTGCGTGCTCTTCCCTTGCA
AGCACTCTTGCATGTGCCACGAGTGCGCCACCACCGTGGTCGAGAACTTC
CCTTGCCCCATCTGCAGGCAGCCCGTCGCCGAGGTCGTCAAGATCTTCGT
GTCCTAGATGAACACGCTCGTGAACGAGATCGAGAACGGCCTCTCCAACG
ACGGCGACTGCAAGGTGTGCTTCGACGCCAAGATCGACTGCGTGCTCTTC
CCTTGCAAGCACTCTTGCATGTGCCACGAGTGCGCCACCACCGTGGTCGA
GAACTTCCCTTGCCCCATCTGCAGGCAGCCCGTCGCCGAGGTCGTCAAGA
TCTTCGTGTCCTAG
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