mRNA_M-pyrifera_M_contig113326.2783.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113326.2783.1
Unique NamemRNA_M-pyrifera_M_contig113326.2783.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A661SEC7_9DELT (P/Homo B domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661SEC7_9DELT)

HSP 1 Score: 112 bits (281), Expect = 9.920e-26
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 1
Query:    7 VIDENDTGQLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYG--SAPSLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIF--------GEINPENFLLET-DGELWYRFTTLGDGRLENLVRVGP 510
            ++++ + G + +FY L      + A+L +++A  V+ GE   D  G LP  P +DLD D  DDLI+G+  AD     +++ AG+LY +YG     ++PE         +V+ NRS TGSG ++VD GTGRP++F        G ++   F+L     E WYRFTTLGDG+  N +R+ P
Sbjct:  422 ILNQQERGHVYLFYSL---VDENVALLKLSEADLVMEGEGEFDKLGTLPNGPCIDLDGDRIDDLIMGASEADGFIGSVKADAGRLYFIYGINRVVAMPESG------YDVVANRSFTGSGDFLVDTGTGRPDVFTDLDLNKDGVLDSCRFVLPLGQSEHWYRFTTLGDGQPGNYIRLSP 591          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A661R447_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661R447_9DELT)

HSP 1 Score: 111 bits (278), Expect = 2.400e-25
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 1
Query:    7 VIDENDTGQLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYG--SAPSLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIF--------GEINPENFLLET-DGELWYRFTTLGDGRLENLVRVGP 510
            ++++ + G + +FY L    G   A++ +++A  V+ GE   D  G LP  P +DLD D  DDLI+G+  AD     +++ AG+LY +YG     ++PE         +V+ NRS TGSG ++VD GTGRP++F        G ++   F+L     E WYRFTTLGDG+  N +R+ P
Sbjct:   64 ILNQQERGHVYLFYSLVDENG---ALVKLSEADLVMEGEGEFDKLGTLPNGPCIDLDGDRIDDLIMGASEADGFIGSVKADAGRLYFIYGINRVVAMPESG------YDVVANRSFTGSGDFLVDTGTGRPDVFTDLDLNKDGVLDSCRFVLPLGQSEHWYRFTTLGDGQPGNYIRLSP 233          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A7Y4QGW3_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7Y4QGW3_9BACT)

HSP 1 Score: 101 bits (251), Expect = 1.120e-21
Identity = 57/171 (33.33%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    1 GQVIDENDTGQLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAPSLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGELWYRFTTLGDGRLENLVRVGPS 513
            G V+D+ + GQ+A+F+ +     +   VL  + A  ++ G    D FG LP +P +DL+ DG  DL++G+  A A   G+    G +  +YG+AP  P     ++ +  VL NR+ITGSG ++++   G+P ++    P        GE WYR+TTLGDG     + + P+
Sbjct:  138 GVVLDQENIGQVAIFWSVAQHVASTGKVLLFSQADVLLEGTTEQDQFGALPLSPGLDLNRDGIHDLVIGTPAASAIGAGIVRSVGTVSIIYGAAPIDPR-VAANQTNAVVLTNRTITGSGDFLIELQPGQPFVYTGTLPSG-----SGENWYRYTTLGDGEAGTQIVLLPA 302          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A2D5ZFE9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5ZFE9_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 5.280e-21
Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   10 IDENDTGQLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAPSLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGELWYRFTTLGDGRLENLVRVGP 510
            +D++D G + VF+ +        + L +  A   I GE   D FGVL   PS+DLD D  DDL+  +  AD     +R  AG+ Y L G AP    D  P +  I  L NR+I+ SG ++VD GTG+P      + EN  L      WYRFTTLGDGR  + +R+ P
Sbjct: 4951 LDQSDRGDVWVFFSIADRL---DSALTLDGADVAIVGEAESDGFGVLVAQPSIDLDGDRHDDLVALAPRADGTVGTIREDAGRAYVLLG-APRRFTDVIPPQAPIIDLANRTISASGDFLVDTGTGQP-----FSIEN-TLNARRTQWYRFTTLGDGRPGDAIRLTP 5107          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A5C5ZPK2_9BACT (Bifunctional hemolysin/adenylate cyclase n=2 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZPK2_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 4.650e-20
Identity = 52/126 (41.27%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  133 DTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAP--SLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGELWYRFTTLGDGRLENLVRV 504
            D+ G LP +P++DL+ DG DDL++G+  A + + G  SG  K+Y +YG+    +LP          + LEN S+ GSG YVV++GTGR E+F E   + F L   GE W++F+TLGDG+  + +R+
Sbjct: 8064 DSNGGLPSSPNLDLNADGIDDLVIGAGLASSTSGGFESG--KIYTIYGAHQRITLPAI-------FDTLENISVPGSGSYVVNRGTGRAELFQE-GDQPFALPAGGERWFQFSTLGDGKGGDAIRI 8179          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: UPI0018D2168E (VCBS domain-containing protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=UPI0018D2168E)

HSP 1 Score: 93.6 bits (231), Expect = 5.480e-19
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   31 QLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTG-LRSGAGKLYALYGSAP----SLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGELWYRFTTLGDGRLENLVRV 504
            ++A+F  + +  G+    L I  A  V++     + FG    T  +DL+ DG DDLI+G+  AD    G L    G+L  +YG+       LPE         ++LEN +++GSG +VVD+GTG  E+F +   E F+  ++ E W+RFTTLGDGR  +L+R+
Sbjct: 6409 EVAIFNHISSFTGS---TLDIQQASVVLSSTNTAEEFGRQSAT--LDLNADGLDDLIIGASLADTIVAGELVPNGGRLDVIYGATSFGTVDLPET-------FDILENFNVSGSGSFVVDRGTGLQEVF-DNGGEPFVFGSNSERWFRFTTLGDGRPGDLIRL 6558          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A0F9EB41_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9EB41_9ZZZZ)

HSP 1 Score: 91.7 bits (226), Expect = 2.180e-18
Identity = 60/163 (36.81%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   28 GQLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAP--SLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGELWYRFTTLGDGRLENLVRVGP 510
            G L VF+    S     + L + DA  ++ GE   D  G LP  P +DL+ D  DDL+  +  A           GK+Y ++G+     LP+           L NRSITGSG ++VD+G+G+P+ F +    N  + T  ELWYRFTTLGDG L   + V P
Sbjct:  150 GSLYVFF----SVADQGSQLVLTDADVILQGEAGSDRLGTLPSAPGLDLNGDRIDDLVAAASGAVTLFDDRDPLTGKVYVIHGARTPGELPKY-------FNELSNRSITGSGNFLVDRGSGKPQTFEKGFASNGPMAT--ELWYRFTTLGDGSLGKHILVTP 299          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A518GCQ2_9BACT (Bifunctional hemolysin/adenylate cyclase n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518GCQ2_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 6.460e-18
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  160 PSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAP--SLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGELWYRFTTLGDGRLENLVRV 504
            P +DL+ DG DDL++ +  A  +    R+ AG++YA+YGS    SLP          +VLEN S+ GSG +VVD+GTGRPE+F E   E + +  + + W++FTTLGDG+  N ++V
Sbjct: 6208 PGIDLNADGIDDLVIPAGLATNQNG--RTEAGQVYAIYGSRGRISLPAS-------YDVLENFSVAGSGSFVVDRGTGRPELFNE-GGEPYEITANQDRWFQFTTLGDGKAGNAIQV 6314          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A7C4QTS9_9BACT (P/Homo B domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C4QTS9_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 2.630e-16
Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 1
Query:    7 VIDENDTGQLAVFYDLGASFGTDTA-----VLGIADAGFVITGEQPGDTFGVLPGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSA--PSLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIF--------GEINPENFLLET-DGELWYRFTTLGDGRLENLVRVGPS 513
            V+D ++ G + VF+        +       VLG  DA  V+ GE   D  G LP  P +DL+ D   +LI+G+  AD+    +   AG+LY +YG+    +LP            L N ++TGSG ++V++GTG+ ++F        G ++   + L   + E W+RFTTLGDG+  + + + P+
Sbjct: 12369 VLDSSERGSVFVFFGNQGKLNYNAVGQLQMVLG--DADLVLEGEGEFDNLGTLPRQPRLDLNGDRLHELIIGAALADSTLGSVAVDAGRLYLIYGARRLSTLPAT-------YSFLTNWTVTGSGYFLVNRGTGQADVFYDPDFNGDGVLDDSRYTLAVGESERWFRFTTLGDGQAGHTIILRPA 12544          
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Match: A0A2A2W6V3_9BACT (Ig-like domain-containing protein n=2 Tax=Rhodopirellula sp. SM50 TaxID=595453 RepID=A0A2A2W6V3_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-15
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  160 PSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAPSLPEDQRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEI-NPENFLLETDGELWYRFTTLGDGRLENLVR 501
            P + L+ D  DDL++ +  + +   G R  AG++Y +YGS   L E   P+  D +VLEN S++GSG +VVD+GTGRP +F +  NP  F L++  E W++FTTLGDG+  + +R
Sbjct: 5318 PGIGLNSDDIDDLLIPAGLS-SNQLGQRD-AGRVYVVYGS---LGESMLPT--DFDVLENFSVSGSGSFVVDRGTGRPALFDDGGNP--FSLQSQSEKWFKFTTLGDGKSGDAIR 5423          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113326.2783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A661SEC7_9DELT9.920e-2637.43P/Homo B domain-containing protein (Fragment) n=1 ... [more]
A0A661R447_9DELT2.400e-2537.43Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A7Y4QGW3_9BACT1.120e-2133.33Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2D5ZFE9_9BACT5.280e-2138.92Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A5C5ZPK2_9BACT4.650e-2041.27Bifunctional hemolysin/adenylate cyclase n=2 Tax=R... [more]
UPI0018D2168E5.480e-1936.20VCBS domain-containing protein n=1 Tax=Stieleria v... [more]
A0A0F9EB41_9ZZZZ2.180e-1836.81Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A518GCQ2_9BACT6.460e-1842.74Bifunctional hemolysin/adenylate cyclase n=1 Tax=A... [more]
A0A7C4QTS9_9BACT2.630e-1631.35P/Homo B domain-containing protein (Fragment) n=1 ... [more]
A0A2A2W6V3_9BACT1.660e-1542.61Ig-like domain-containing protein n=2 Tax=Rhodopir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113326contigM-pyrifera_M_contig113326:26..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog595460.RRSWK_02125
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haemolysin-type calcium-binding repeat (2 copies)
EggNOG OGs2IZ0P@203682,COG1357@1,COG1357@2,COG1511@1,COG1511@2,COG2931@1,COG2931@2,COG3291@1,COG3291@2
COG Functional cat.Q
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.4217472-CDS-M-pyrifera_M_contig113326:25..5381622815648.4217472-CDS-M-pyrifera_M_contig113326:25..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113326 26..538 +
1692277504.2110775-CDS-M-pyrifera_M_contig113326:25..5381692277504.2110775-CDS-M-pyrifera_M_contig113326:25..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113326 26..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113326.2783.1prot_M-pyrifera_M_contig113326.2783.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113326 26..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113326.2783.1

>prot_M-pyrifera_M_contig113326.2783.1 ID=prot_M-pyrifera_M_contig113326.2783.1|Name=mRNA_M-pyrifera_M_contig113326.2783.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
GQVIDENDTGQLAVFYDLGASFGTDTAVLGIADAGFVITGEQPGDTFGVL
PGTPSMDLDLDGRDDLIVGSETADARTTGLRSGAGKLYALYGSAPSLPED
QRPSEDDIEVLENRSITGSGGYVVDKGTGRPEIFGEINPENFLLETDGEL
WYRFTTLGDGRLENLVRVGPS
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mRNA from alignment at M-pyrifera_M_contig113326:26..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113326.2783.1 ID=mRNA_M-pyrifera_M_contig113326.2783.1|Name=mRNA_M-pyrifera_M_contig113326.2783.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig113326:26..538+ (Macrocystis pyrifera P11B4 male)
GGTCAGGTCATCGACGAAAACGACACCGGCCAGTTGGCCGTGTTCTACGA TCTTGGTGCCTCGTTCGGCACTGACACGGCAGTGCTCGGAATTGCGGACG CCGGGTTCGTCATCACCGGTGAGCAACCCGGCGATACGTTCGGCGTATTA CCCGGCACGCCCTCGATGGATCTGGATCTCGATGGCCGCGACGACCTGAT CGTCGGCTCGGAAACGGCCGATGCCCGCACCACCGGCCTGCGCAGCGGCG CGGGCAAGCTCTACGCGCTGTACGGCAGCGCGCCGAGCCTGCCGGAAGAC CAGCGCCCGAGCGAAGATGATATCGAAGTGCTGGAAAACCGCAGCATTAC CGGCAGCGGCGGCTATGTCGTCGACAAGGGCACGGGCCGGCCGGAGATAT TCGGCGAGATCAACCCGGAGAATTTCCTGCTCGAGACGGACGGCGAGCTT TGGTACCGCTTCACGACGCTCGGCGATGGCCGACTCGAAAACCTCGTCCG TGTCGGCCCCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113326:26..538+

>mRNA_M-pyrifera_M_contig113326.2783.1 ID=mRNA_M-pyrifera_M_contig113326.2783.1|Name=mRNA_M-pyrifera_M_contig113326.2783.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig113326:26..538+ (Macrocystis pyrifera P11B4 male)
GGTCAGGTCATCGACGAAAACGACACCGGCCAGTTGGCCGTGTTCTACGA
TCTTGGTGCCTCGTTCGGCACTGACACGGCAGTGCTCGGAATTGCGGACG
CCGGGTTCGTCATCACCGGTGAGCAACCCGGCGATACGTTCGGCGTATTA
CCCGGCACGCCCTCGATGGATCTGGATCTCGATGGCCGCGACGACCTGAT
CGTCGGCTCGGAAACGGCCGATGCCCGCACCACCGGCCTGCGCAGCGGCG
CGGGCAAGCTCTACGCGCTGTACGGCAGCGCGCCGAGCCTGCCGGAAGAC
CAGCGCCCGAGCGAAGATGATATCGAAGTGCTGGAAAACCGCAGCATTAC
CGGCAGCGGCGGCTATGTCGTCGACAAGGGCACGGGCCGGCCGGAGATAT
TCGGCGAGATCAACCCGGAGAATTTCCTGCTCGAGACGGACGGCGAGCTT
TGGTACCGCTTCACGACGCTCGGCGATGGCCGACTCGAAAACCTCGTCCG
TGTCGGCCCCTCCGGTCAGGTCATCGACGAAAACGACACCGGCCAGTTGG
CCGTGTTCTACGATCTTGGTGCCTCGTTCGGCACTGACACGGCAGTGCTC
GGAATTGCGGACGCCGGGTTCGTCATCACCGGTGAGCAACCCGGCGATAC
GTTCGGCGTATTACCCGGCACGCCCTCGATGGATCTGGATCTCGATGGCC
GCGACGACCTGATCGTCGGCTCGGAAACGGCCGATGCCCGCACCACCGGC
CTGCGCAGCGGCGCGGGCAAGCTCTACGCGCTGTACGGCAGCGCGCCGAG
CCTGCCGGAAGACCAGCGCCCGAGCGAAGATGATATCGAAGTGCTGGAAA
ACCGCAGCATTACCGGCAGCGGCGGCTATGTCGTCGACAAGGGCACGGGC
CGGCCGGAGATATTCGGCGAGATCAACCCGGAGAATTTCCTGCTCGAGAC
GGACGGCGAGCTTTGGTACCGCTTCACGACGCTCGGCGATGGCCGACTCG
AAAACCTCGTCCGTGTCGGCCCCTCC
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