mRNA_M-pyrifera_M_contig113305.2780.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113305.2780.1
Unique NamemRNA_M-pyrifera_M_contig113305.2780.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.320e-26
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            L +GK K+GYWGY QFEEQV DVMDVLE + P+ Q++ EVDHS+GH K REDGLHV NMNV++GGK++ LRD
Sbjct:  351 LEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRD 422          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.010e-26
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALR 213
            L +GK K+GYWGY QFEEQV DVMDVLE + P+ Q++ EVDHS+GH K REDGLHV NMNV++GGK++ LR
Sbjct:  565 LEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLR 635          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.310e-25
Identity = 43/72 (59.72%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            L +GKNK+GYWGY +F+EQ+ D +DVL+   P+ Q+++E+DHS+GH + REDGLHVGNMNV++GGK++ LRD
Sbjct:  691 LQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRD 762          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.820e-25
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   13 KNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            + K+GYWGY QFEEQV DVMDVLE + P+ Q++ EVDHS+GH K REDGLHV NMNV++GGK++ LRD
Sbjct:   65 RGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRD 132          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5KJF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.330e-25
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   19 KEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            K+GYWGY QFEEQV DVMDVLE + P+ Q++ EVDHS+GH K REDGLHV NMNV++GGK++ LRD
Sbjct:   93 KDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRD 158          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.770e-25
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            L +GK K+GYWGY  FEEQV DV+DVLE + P+ Q++ EVDHS+GH K REDGLHV NMNV++GGK++ LRD
Sbjct:  196 LEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRD 267          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5L6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.600e-24
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            L +GK KEGYWGY QFEEQV DVMDVLE + P+ Q++ EVDH++GH K REDGL++ NMNV++ GK++ LRD
Sbjct:  445 LEYGKGKEGYWGYDQFEEQVEDVMDVLEHIDPDMQVVFEVDHASGHGKQREDGLYLSNMNVKYEGKQKVLRD 516          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.180e-22
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            L + KN++GY GY +F+EQ+ DV+DVL    P+ Q+++E+DHS+GH + REDGLHVGNMNV++GGK++ LRD
Sbjct:  490 LQYWKNRDGYRGYDEFKEQIEDVLDVLNVFEPDMQVVVEIDHSSGHTRKREDGLHVGNMNVKYGGKQKVLRD 561          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.090e-22
Identity = 38/70 (54.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRAL 210
            L +G NK+GYWGY +F+EQ+ DV+DV +   P+ Q+++E+DHS+GH + REDGLH GNMNV++GGK++ +
Sbjct:  860 LQYGTNKDGYWGYDEFKEQIEDVLDVFDDFEPDMQVVVEIDHSSGHTRQREDGLHAGNMNVKYGGKQKGV 929          
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.410e-21
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYREDGLHVGNMNVRFGGKKRALRD 216
            L +GKNK+GYWGY +F+EQ+           P+ Q+++E+DHS+GH + REDGLHVGNMNV++GGK++ LRD
Sbjct:  540 LQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRD 611          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113305.2780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KXL0_9PHAE1.320e-2668.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE9.010e-2667.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2T4_9PHAE2.310e-2559.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH4_9PHAE2.820e-2567.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJF8_9PHAE3.330e-2569.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB9_9PHAE3.770e-2565.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Y6_9PHAE3.600e-2463.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5X3_9PHAE2.180e-2256.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE4.090e-2254.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUX8_9PHAE1.410e-2154.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113305contigM-pyrifera_M_contig113305:341..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.1178584-CDS-M-pyrifera_M_contig113305:340..5561622815648.1178584-CDS-M-pyrifera_M_contig113305:340..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113305 341..556 -
1692277504.0549803-CDS-M-pyrifera_M_contig113305:340..5561692277504.0549803-CDS-M-pyrifera_M_contig113305:340..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113305 341..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113305.2780.1prot_M-pyrifera_M_contig113305.2780.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113305 341..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113305.2780.1

>prot_M-pyrifera_M_contig113305.2780.1 ID=prot_M-pyrifera_M_contig113305.2780.1|Name=mRNA_M-pyrifera_M_contig113305.2780.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
LVHGKNKEGYWGYVQFEEQVVDVMDVLEALYPNHQLMIEVDHSAGHAKYR
EDGLHVGNMNVRFGGKKRALRD
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mRNA from alignment at M-pyrifera_M_contig113305:341..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113305.2780.1 ID=mRNA_M-pyrifera_M_contig113305.2780.1|Name=mRNA_M-pyrifera_M_contig113305.2780.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig113305:341..556- (Macrocystis pyrifera P11B4 male)
CTGGTGCACGGCAAGAATAAGGAAGGGTATTGGGGGTATGTCCAGTTCGA GGAGCAGGTAGTAGACGTGATGGACGTCCTCGAGGCCCTCTACCCAAACC ACCAATTGATGATCGAGGTGGACCACTCAGCAGGGCATGCCAAGTACCGA GAGGATGGCCTGCACGTGGGAAACATGAACGTGAGGTTTGGAGGCAAGAA GAGGGCCCTGCGGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113305:341..556-

>mRNA_M-pyrifera_M_contig113305.2780.1 ID=mRNA_M-pyrifera_M_contig113305.2780.1|Name=mRNA_M-pyrifera_M_contig113305.2780.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig113305:341..556- (Macrocystis pyrifera P11B4 male)
CTGGTGCACGGCAAGAATAAGGAAGGGTATTGGGGGTATGTCCAGTTCGA
GGAGCAGGTAGTAGACGTGATGGACGTCCTCGAGGCCCTCTACCCAAACC
ACCAATTGATGATCGAGGTGGACCACTCAGCAGGGCATGCCAAGTACCGA
GAGGATGGCCTGCACGTGGGAAACATGAACGTGAGGTTTGGAGGCAAGAA
GAGGGCCCTGCGGGATCTGGTGCACGGCAAGAATAAGGAAGGGTATTGGG
GGTATGTCCAGTTCGAGGAGCAGGTAGTAGACGTGATGGACGTCCTCGAG
GCCCTCTACCCAAACCACCAATTGATGATCGAGGTGGACCACTCAGCAGG
GCATGCCAAGTACCGAGAGGATGGCCTGCACGTGGGAAACATGAACGTGA
GGTTTGGAGGCAAGAAGAGGGCCCTGCGGGAT
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