mRNA_M-pyrifera_M_contig113278.2777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113278.2777.1
Unique NamemRNA_M-pyrifera_M_contig113278.2777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A2P6NTT6_9EUKA (Phosphatidylinositol glycan, class F n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NTT6_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 2.330e-14
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   82 PVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIGCAGIAIAYKK 243
            P+IGATIG WIGAL  PLDW+ PWQQWP+  ++G  VG+  G+  A IA  YK 
Sbjct:  114 PIIGATIGSWIGALPIPLDWDRPWQQWPISCVIGCVVGHSCGVLIAIIASRYKS 167
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A066VMM4_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A066VMM4_9AGAM)

HSP 1 Score: 70.1 bits (170), Expect = 2.270e-12
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    7 SWVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIGCAGIAIAYKK 243
             W+G ++ F    P D     A V P IGA IG WIGAL  PLDW+ PWQ WPL       +G+++G G A +A++  +
Sbjct:  232 KWIGMFVEFSARSPVDR----AIVFPAIGAIIGCWIGALPMPLDWDRPWQAWPLTSAYMAVIGHLIGSG-ASLAVSIAQ 305
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A8H3AS02_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AS02_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 5.610e-12
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    7 SWVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIGCAGIAIAYKK 243
             W+G ++ F    P D     A V P IGA IG W+GAL  PLDW+ PWQ WPL       +G+++G G A +A++  +
Sbjct:  221 KWIGLFLEFSARSPVDR----AVVFPAIGAIIGCWLGALPMPLDWDRPWQAWPLTSAYMAVIGHLIGSG-ASLAVSIAQ 294
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A8H8MQS3_9AGAM (GPI biosynthesis family Pig-F protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MQS3_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 5.860e-12
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   10 WVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIG 213
            W+ T++ F    P D     A V P +GA +G W+GAL  PLDW+ PWQ WPL       VG+VVG G
Sbjct:  228 WIDTFVEFSVRSPVDR----AVVFPALGAIVGCWLGALPMPLDWDRPWQAWPLTSAYMAVVGHVVGAG 291
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A8H2WMM6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2WMM6_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 6.850e-12
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    7 SWVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIG 213
             W+G ++ F    P D     A V P IGA +G W+GAL  PLDW+ PWQ WPL       +G++VG G
Sbjct:  260 KWIGLFVEFSARSPVDR----AIVFPAIGAVVGCWLGALPMPLDWDRPWQAWPLTSAYTAVIGHLVGSG 324
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: J5TRB0_TRIAS (Uncharacterized protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5TRB0_TRIAS)

HSP 1 Score: 68.2 bits (165), Expect = 8.810e-12
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   76 VLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIGCAGIAIAYK 240
            V P +GA IG W+GA+   LDW+ PWQ WPL +LVG   G+V G  C   + A+K
Sbjct:  193 VYPAVGAVIGAWVGAIPMALDWDRPWQAWPLSVLVGACAGFVAGGYCGWASCAFK 247
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A074RQZ7_9AGAM (GPI biosynthesis family Pig-F protein n=4 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074RQZ7_9AGAM)

HSP 1 Score: 68.2 bits (165), Expect = 1.140e-11
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    7 SWVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIG 213
             W+G ++ F    P D     A V P IGA IG W+GAL  PLDW+ PWQ WPL       +G+++G G
Sbjct:  232 KWIGLFVEFSTRSPVDR----AIVFPAIGAIIGCWLGALPMPLDWDRPWQAWPLTSAYMAVIGHLIGSG 296
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A0V0GG37_SOLCH (Putative ovule protein (Fragment) n=2 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GG37_SOLCH)

HSP 1 Score: 63.9 bits (154), Expect = 1.600e-11
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   79 LPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIGCAGIAIAYKK 243
            LP  GA IG W GA   PLDW  PWQ+WP+ +  G   GY++G+  + + I ++ 
Sbjct:   38 LPAYGAVIGAWFGAWPMPLDWERPWQEWPICVSYGAMAGYLMGLVASSVCIIFRN 92
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BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A8H3GX95_9AGAM (Hypothetical protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3GX95_9AGAM)

HSP 1 Score: 67.4 bits (163), Expect = 2.170e-11
Identity = 30/69 (43.48%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:    7 SWVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIG 213
             W+G ++ F    P D     A V P IGA IG W GAL  PLDW+ PWQ WPL       +G+++G G
Sbjct:  231 KWIGLFVEFSARSPVDR----AIVFPAIGAIIGCWFGALPMPLDWDRPWQAWPLTSAYMAIIGHLIGSG 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Match: A0A8K0VJH7_9HYPO (GPI biosynthesis protein family Pig-F-domain-containing protein n=2 Tax=Ilyonectria TaxID=1079112 RepID=A0A8K0VJH7_9HYPO)

HSP 1 Score: 66.6 bits (161), Expect = 2.420e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   91 GATIGPWIGALATPLDWNEPWQQWPLPILVGTHVGYVVGIGCAGIAIAYKK 243
            GATIG W+GA+  PLDW+  WQ+WP+ I+VG ++GYVVG    G A   K+
Sbjct:  189 GATIGAWLGAVPIPLDWDREWQKWPVTIVVGAYLGYVVGSKVLGTAFYGKR 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113278.2777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NTT6_9EUKA2.330e-1457.41Phosphatidylinositol glycan, class F n=1 Tax=Plano... [more]
A0A066VMM4_9AGAM2.270e-1241.77Uncharacterized protein (Fragment) n=2 Tax=Rhizoct... [more]
A0A8H3AS02_9AGAM5.610e-1240.51Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A8H8MQS3_9AGAM5.860e-1245.59GPI biosynthesis family Pig-F protein n=2 Tax=Cera... [more]
A0A8H2WMM6_9AGAM6.850e-1243.48Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
J5TRB0_TRIAS8.810e-1249.09Uncharacterized protein n=2 Tax=Trichosporon asahi... [more]
A0A074RQZ7_9AGAM1.140e-1143.48GPI biosynthesis family Pig-F protein n=4 Tax=Rhiz... [more]
A0A0V0GG37_SOLCH1.600e-1141.82Putative ovule protein (Fragment) n=2 Tax=Solanum ... [more]
A0A8H3GX95_9AGAM2.170e-1143.48Hypothetical protein n=2 Tax=Rhizoctonia solani Ta... [more]
A0A8K0VJH7_9HYPO2.420e-1152.94GPI biosynthesis protein family Pig-F-domain-conta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113278contigM-pyrifera_M_contig113278:287..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.6
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog82508.K1WDM3
Preferred nameGPI11
KEGG rclassRC00017
KEGG koko:K05287
KEGG ReactionR05923,R05924,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016491,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0030447,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0040007,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0055114,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.GPI biosynthesis protein family Pig-F
EggNOG OGs38FGA@33154,3P38D@4751,3V1MB@5204,3VFHT@5234,KOG3144@1,KOG3144@2759
Ec32 ortholog descriptionGPI biosynthesis protein Pig-F
Ec32 orthologEc-19_004260.1
COG Functional cat.MO
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.9666183-CDS-M-pyrifera_M_contig113278:286..5321622815647.9666183-CDS-M-pyrifera_M_contig113278:286..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113278 287..532 +
1692277503.973209-CDS-M-pyrifera_M_contig113278:286..5321692277503.973209-CDS-M-pyrifera_M_contig113278:286..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113278 287..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113278.2777.1prot_M-pyrifera_M_contig113278.2777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113278 287..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113278.2777.1

>prot_M-pyrifera_M_contig113278.2777.1 ID=prot_M-pyrifera_M_contig113278.2777.1|Name=mRNA_M-pyrifera_M_contig113278.2777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MHSWVGTWISFRFSVPYDPLPHWASVLPVIGATIGPWIGALATPLDWNEP
WQQWPLPILVGTHVGYVVGIGCAGIAIAYKK*
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mRNA from alignment at M-pyrifera_M_contig113278:287..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113278.2777.1 ID=mRNA_M-pyrifera_M_contig113278.2777.1|Name=mRNA_M-pyrifera_M_contig113278.2777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig113278:287..532+ (Macrocystis pyrifera P11B4 male)
ATGCATTCTTGGGTGGGAACATGGATTTCATTTCGTTTCTCTGTCCCATA
TGACCCATTACCACATTGGGCATCAGTGCTACCTGTGATTGGTGCAACAA
TCGGGCCATGGATTGGTGCTCTTGCTACTCCTCTTGATTGGAATGAGCCA
TGGCAACAATGGCCGCTCCCAATCTTGGTTGGAACACATGTAGGGTATGT
TGTGGGGATTGGTTGTGCTGGAATTGCAATTGCTTACAAGAAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113278:287..532+

>mRNA_M-pyrifera_M_contig113278.2777.1 ID=mRNA_M-pyrifera_M_contig113278.2777.1|Name=mRNA_M-pyrifera_M_contig113278.2777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig113278:287..532+ (Macrocystis pyrifera P11B4 male)
ATGCATTCTTGGGTGGGAACATGGATTTCATTTCGTTTCTCTGTCCCATA
TGACCCATTACCACATTGGGCATCAGTGCTACCTGTGATTGGTGCAACAA
TCGGGCCATGGATTGGTGCTCTTGCTACTCCTCTTGATTGGAATGAGCCA
TGGCAACAATGGCCGCTCCCAATCTTGGTTGGAACACATGTAGGGTATGT
TGTGGGGATTGGTTGTGCTGGAATTGCAATTGCTTACAAGAAATGAATGC
ATTCTTGGGTGGGAACATGGATTTCATTTCGTTTCTCTGTCCCATATGAC
CCATTACCACATTGGGCATCAGTGCTACCTGTGATTGGTGCAACAATCGG
GCCATGGATTGGTGCTCTTGCTACTCCTCTTGATTGGAATGAGCCATGGC
AACAATGGCCGCTCCCAATCTTGGTTGGAACACATGTAGGGTATGTTGTG
GGGATTGGTTGTGCTGGAATTGCAATTGCTTACAAGAAATGA
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